Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_805

Experiment: acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_804 and Pf1N1B4_805 are separated by 34 nucleotidesPf1N1B4_805 and Pf1N1B4_806 are separated by 193 nucleotides Pf1N1B4_804 - hypothetical protein, at 919,369 to 921,210 _804 Pf1N1B4_805 - hypothetical protein, at 921,245 to 922,516 _805 Pf1N1B4_806 - hypothetical protein, at 922,710 to 924,479 _806 Position (kb) 921 922 923Strain fitness (log2 ratio) -2 -1 0 1 2 3at 920.284 kb on + strand, within Pf1N1B4_804at 920.284 kb on + strand, within Pf1N1B4_804at 920.284 kb on + strand, within Pf1N1B4_804at 920.284 kb on + strand, within Pf1N1B4_804at 920.285 kb on - strand, within Pf1N1B4_804at 920.285 kb on - strand, within Pf1N1B4_804at 920.285 kb on - strand, within Pf1N1B4_804at 920.285 kb on - strand, within Pf1N1B4_804at 920.596 kb on + strand, within Pf1N1B4_804at 920.642 kb on - strand, within Pf1N1B4_804at 920.833 kb on + strand, within Pf1N1B4_804at 920.833 kb on + strand, within Pf1N1B4_804at 920.834 kb on - strand, within Pf1N1B4_804at 920.834 kb on - strand, within Pf1N1B4_804at 920.918 kb on + strand, within Pf1N1B4_804at 920.918 kb on + strand, within Pf1N1B4_804at 920.918 kb on + strand, within Pf1N1B4_804at 920.918 kb on + strand, within Pf1N1B4_804at 920.919 kb on - strand, within Pf1N1B4_804at 920.919 kb on - strand, within Pf1N1B4_804at 920.919 kb on - strandat 920.919 kb on - strand, within Pf1N1B4_804at 920.919 kb on - strandat 920.919 kb on - strand, within Pf1N1B4_804at 921.416 kb on + strand, within Pf1N1B4_805at 921.416 kb on + strand, within Pf1N1B4_805at 921.416 kb on + strand, within Pf1N1B4_805at 921.416 kb on + strand, within Pf1N1B4_805at 921.416 kb on + strand, within Pf1N1B4_805at 921.417 kb on - strand, within Pf1N1B4_805at 921.417 kb on - strand, within Pf1N1B4_805at 921.476 kb on + strand, within Pf1N1B4_805at 921.476 kb on + strand, within Pf1N1B4_805at 921.476 kb on + strand, within Pf1N1B4_805at 921.476 kb on + strand, within Pf1N1B4_805at 921.477 kb on - strand, within Pf1N1B4_805at 921.645 kb on - strand, within Pf1N1B4_805at 921.824 kb on + strand, within Pf1N1B4_805at 921.824 kb on + strand, within Pf1N1B4_805at 921.824 kb on + strand, within Pf1N1B4_805at 921.824 kb on + strand, within Pf1N1B4_805at 921.825 kb on - strand, within Pf1N1B4_805at 921.838 kb on + strand, within Pf1N1B4_805at 921.839 kb on - strand, within Pf1N1B4_805at 922.015 kb on + strand, within Pf1N1B4_805at 922.016 kb on - strand, within Pf1N1B4_805at 922.016 kb on - strand, within Pf1N1B4_805at 922.127 kb on - strand, within Pf1N1B4_805at 922.127 kb on - strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.149 kb on + strand, within Pf1N1B4_805at 922.150 kb on - strand, within Pf1N1B4_805at 922.271 kb on + strand, within Pf1N1B4_805at 922.271 kb on + strand, within Pf1N1B4_805at 922.271 kb on + strand, within Pf1N1B4_805at 922.272 kb on - strand, within Pf1N1B4_805at 922.272 kb on - strand, within Pf1N1B4_805at 922.272 kb on - strand, within Pf1N1B4_805at 922.320 kb on - strand, within Pf1N1B4_805at 922.562 kb on - strandat 922.846 kb on + strandat 923.322 kb on - strand, within Pf1N1B4_806

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 20 mM
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920,284 + Pf1N1B4_804 0.50 +0.6
920,284 + Pf1N1B4_804 0.50 +0.1
920,284 + Pf1N1B4_804 0.50 -0.2
920,284 + Pf1N1B4_804 0.50 +0.1
920,285 - Pf1N1B4_804 0.50 +1.1
920,285 - Pf1N1B4_804 0.50 +0.8
920,285 - Pf1N1B4_804 0.50 -0.3
920,285 - Pf1N1B4_804 0.50 +1.6
920,596 + Pf1N1B4_804 0.67 -0.1
920,642 - Pf1N1B4_804 0.69 +0.6
920,833 + Pf1N1B4_804 0.79 +0.7
920,833 + Pf1N1B4_804 0.79 +0.3
920,834 - Pf1N1B4_804 0.80 -0.1
920,834 - Pf1N1B4_804 0.80 +0.2
920,918 + Pf1N1B4_804 0.84 -0.9
920,918 + Pf1N1B4_804 0.84 -0.9
920,918 + Pf1N1B4_804 0.84 +2.1
920,918 + Pf1N1B4_804 0.84 -0.5
920,919 - Pf1N1B4_804 0.84 -1.1
920,919 - Pf1N1B4_804 0.84 -0.5
920,919 - +0.1
920,919 - Pf1N1B4_804 0.84 -0.2
920,919 - -0.5
920,919 - Pf1N1B4_804 0.84 -2.4
921,416 + Pf1N1B4_805 0.13 -0.6
921,416 + Pf1N1B4_805 0.13 +3.6
921,416 + Pf1N1B4_805 0.13 +0.4
921,416 + Pf1N1B4_805 0.13 +0.1
921,416 + Pf1N1B4_805 0.13 +0.0
921,417 - Pf1N1B4_805 0.14 +1.1
921,417 - Pf1N1B4_805 0.14 +0.7
921,476 + Pf1N1B4_805 0.18 +2.6
921,476 + Pf1N1B4_805 0.18 -0.5
921,476 + Pf1N1B4_805 0.18 +1.5
921,476 + Pf1N1B4_805 0.18 -1.5
921,477 - Pf1N1B4_805 0.18 +0.2
921,645 - Pf1N1B4_805 0.31 -0.5
921,824 + Pf1N1B4_805 0.46 -0.4
921,824 + Pf1N1B4_805 0.46 +1.3
921,824 + Pf1N1B4_805 0.46 +1.1
921,824 + Pf1N1B4_805 0.46 +0.3
921,825 - Pf1N1B4_805 0.46 -1.3
921,838 + Pf1N1B4_805 0.47 +1.2
921,839 - Pf1N1B4_805 0.47 -0.3
922,015 + Pf1N1B4_805 0.61 +0.1
922,016 - Pf1N1B4_805 0.61 +0.7
922,016 - Pf1N1B4_805 0.61 +1.1
922,127 - Pf1N1B4_805 0.69 +0.7
922,127 - Pf1N1B4_805 0.69 +1.1
922,149 + Pf1N1B4_805 0.71 -0.7
922,149 + Pf1N1B4_805 0.71 +0.6
922,149 + Pf1N1B4_805 0.71 +0.1
922,149 + Pf1N1B4_805 0.71 +1.1
922,149 + Pf1N1B4_805 0.71 +1.2
922,150 - Pf1N1B4_805 0.71 +2.4
922,271 + Pf1N1B4_805 0.81 -0.5
922,271 + Pf1N1B4_805 0.81 -0.1
922,271 + Pf1N1B4_805 0.81 +0.3
922,272 - Pf1N1B4_805 0.81 -0.7
922,272 - Pf1N1B4_805 0.81 +1.3
922,272 - Pf1N1B4_805 0.81 +0.3
922,320 - Pf1N1B4_805 0.85 -0.5
922,562 - +0.3
922,846 + +0.8
923,322 - Pf1N1B4_806 0.35 +0.1

Or see this region's nucleotide sequence