Experiment: acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_686 and Pf1N1B4_687 are separated by 241 nucleotides Pf1N1B4_687 and Pf1N1B4_688 are separated by 0 nucleotides Pf1N1B4_688 and Pf1N1B4_689 are separated by 41 nucleotides Pf1N1B4_689 and Pf1N1B4_690 are separated by 427 nucleotides
Pf1N1B4_686 - Dicarboxylate MFS transporter, at 784,892 to 786,211
_686
Pf1N1B4_687 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 786,453 to 787,082
_687
Pf1N1B4_688 - FIG00955483: hypothetical protein, at 787,083 to 787,313
_688
Pf1N1B4_689 - FIG00954888: hypothetical protein, at 787,355 to 787,708
_689
Pf1N1B4_690 - Transcriptional regulator, AraC family, at 788,136 to 789,065
_690
Position (kb) 787
788 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 786.116 kb on + strand at 786.119 kb on + strand at 786.119 kb on + strand at 786.119 kb on + strand at 786.119 kb on + strand at 786.120 kb on - strand at 786.120 kb on - strand at 786.125 kb on + strand at 786.125 kb on + strand at 786.126 kb on - strand at 786.126 kb on - strand at 786.126 kb on - strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.161 kb on + strand at 786.162 kb on - strand at 786.227 kb on - strand at 786.264 kb on + strand at 786.265 kb on - strand at 786.265 kb on - strand at 786.265 kb on - strand at 786.317 kb on - strand at 786.341 kb on + strand at 786.342 kb on - strand at 786.396 kb on + strand at 786.397 kb on - strand at 786.452 kb on + strand at 786.452 kb on + strand at 786.453 kb on - strand at 786.453 kb on - strand at 786.474 kb on + strand at 786.474 kb on + strand at 786.474 kb on + strand at 786.475 kb on - strand at 786.475 kb on - strand at 786.593 kb on + strand at 786.593 kb on + strand, within Pf1N1B4_687 at 786.593 kb on + strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.594 kb on - strand, within Pf1N1B4_687 at 786.615 kb on + strand, within Pf1N1B4_687 at 786.616 kb on - strand, within Pf1N1B4_687 at 786.616 kb on - strand, within Pf1N1B4_687 at 786.616 kb on - strand, within Pf1N1B4_687 at 786.972 kb on + strand, within Pf1N1B4_687 at 786.972 kb on + strand, within Pf1N1B4_687 at 786.973 kb on - strand, within Pf1N1B4_687 at 787.080 kb on + strand at 787.080 kb on + strand at 787.080 kb on + strand at 787.081 kb on - strand at 787.081 kb on - strand at 787.081 kb on - strand at 787.081 kb on - strand at 787.081 kb on - strand at 787.081 kb on - strand at 787.081 kb on - strand at 787.084 kb on + strand at 787.084 kb on + strand at 787.085 kb on - strand at 787.269 kb on + strand, within Pf1N1B4_688 at 787.269 kb on + strand, within Pf1N1B4_688 at 787.269 kb on + strand, within Pf1N1B4_688 at 787.269 kb on + strand, within Pf1N1B4_688 at 787.269 kb on + strand, within Pf1N1B4_688 at 787.373 kb on + strand at 787.374 kb on - strand at 787.500 kb on + strand, within Pf1N1B4_689 at 787.500 kb on + strand, within Pf1N1B4_689 at 787.500 kb on + strand, within Pf1N1B4_689 at 787.501 kb on - strand, within Pf1N1B4_689 at 787.681 kb on + strand at 787.682 kb on - strand at 787.682 kb on - strand at 787.702 kb on + strand at 787.703 kb on - strand at 787.870 kb on + strand at 787.870 kb on + strand at 788.095 kb on - strand at 788.220 kb on - strand at 788.241 kb on + strand, within Pf1N1B4_690 at 788.241 kb on + strand, within Pf1N1B4_690 at 788.242 kb on - strand at 788.242 kb on - strand, within Pf1N1B4_690 at 788.242 kb on - strand, within Pf1N1B4_690 at 788.242 kb on - strand, within Pf1N1B4_690 at 788.242 kb on - strand, within Pf1N1B4_690
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 20 mM remove 786,116 + +0.3 786,119 + -1.3 786,119 + +1.6 786,119 + -0.0 786,119 + +1.7 786,120 - +0.3 786,120 - +0.4 786,125 + -0.0 786,125 + +2.0 786,126 - +1.0 786,126 - +0.9 786,126 - +1.0 786,161 + +1.0 786,161 + +0.2 786,161 + +0.8 786,161 + -0.8 786,161 + -0.0 786,161 + +0.7 786,161 + +2.0 786,161 + +0.3 786,161 + -1.0 786,162 - -0.2 786,227 - -0.0 786,264 + +0.8 786,265 - -2.3 786,265 - -1.2 786,265 - +0.3 786,317 - -0.3 786,341 + -2.2 786,342 - -0.6 786,396 + -0.3 786,397 - -0.0 786,452 + +1.0 786,452 + -0.0 786,453 - -0.2 786,453 - +0.2 786,474 + +0.4 786,474 + -1.6 786,474 + +0.3 786,475 - -1.0 786,475 - +1.7 786,593 + -0.0 786,593 + Pf1N1B4_687 0.22 -1.6 786,593 + Pf1N1B4_687 0.22 +0.4 786,594 - Pf1N1B4_687 0.22 +2.0 786,594 - Pf1N1B4_687 0.22 -0.5 786,594 - Pf1N1B4_687 0.22 +1.4 786,594 - Pf1N1B4_687 0.22 -0.0 786,594 - Pf1N1B4_687 0.22 -1.3 786,594 - Pf1N1B4_687 0.22 +0.3 786,594 - Pf1N1B4_687 0.22 -1.0 786,594 - Pf1N1B4_687 0.22 +0.4 786,615 + Pf1N1B4_687 0.26 +1.6 786,616 - Pf1N1B4_687 0.26 +0.8 786,616 - Pf1N1B4_687 0.26 -1.6 786,616 - Pf1N1B4_687 0.26 +0.2 786,972 + Pf1N1B4_687 0.82 +0.4 786,972 + Pf1N1B4_687 0.82 +0.1 786,973 - Pf1N1B4_687 0.83 -1.6 787,080 + -0.6 787,080 + +0.3 787,080 + +0.4 787,081 - -1.4 787,081 - -1.0 787,081 - +0.7 787,081 - -1.3 787,081 - -1.1 787,081 - -0.8 787,081 - -0.0 787,084 + +0.6 787,084 + +0.8 787,085 - +0.2 787,269 + Pf1N1B4_688 0.81 -0.7 787,269 + Pf1N1B4_688 0.81 -0.9 787,269 + Pf1N1B4_688 0.81 -1.8 787,269 + Pf1N1B4_688 0.81 +2.0 787,269 + Pf1N1B4_688 0.81 +3.3 787,373 + -0.2 787,374 - +1.3 787,500 + Pf1N1B4_689 0.41 -0.9 787,500 + Pf1N1B4_689 0.41 -1.0 787,500 + Pf1N1B4_689 0.41 +0.5 787,501 - Pf1N1B4_689 0.41 -0.9 787,681 + +1.1 787,682 - +0.9 787,682 - -1.1 787,702 + -1.3 787,703 - -0.2 787,870 + +1.4 787,870 + +1.0 788,095 - +0.0 788,220 - +0.7 788,241 + Pf1N1B4_690 0.11 +0.3 788,241 + Pf1N1B4_690 0.11 +1.0 788,242 - +1.6 788,242 - Pf1N1B4_690 0.11 -0.0 788,242 - Pf1N1B4_690 0.11 +1.7 788,242 - Pf1N1B4_690 0.11 +1.0 788,242 - Pf1N1B4_690 0.11 -0.0
Or see this region's nucleotide sequence