Experiment: acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4978 and Pf1N1B4_4979 are separated by 120 nucleotides Pf1N1B4_4979 and Pf1N1B4_4980 are separated by 197 nucleotides Pf1N1B4_4980 and Pf1N1B4_4981 are separated by 9 nucleotides Pf1N1B4_4981 and Pf1N1B4_4982 are separated by 101 nucleotides
Pf1N1B4_4978 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 5,517,901 to 5,518,935
_4978
Pf1N1B4_4979 - Transcriptional regulator, AsnC family, at 5,519,056 to 5,519,556
_4979
Pf1N1B4_4980 - putative lipoprotein, at 5,519,754 to 5,520,896
_4980
Pf1N1B4_4981 - lipoprotein, putative, at 5,520,906 to 5,521,544
_4981
Pf1N1B4_4982 - Transcriptional regulator, AraC family, at 5,521,646 to 5,522,650
_4982
Position (kb) 5519
5520
5521 Strain fitness (log2 ratio) -1
0
1
2
3 at 5518.886 kb on - strand at 5518.938 kb on - strand at 5518.938 kb on - strand at 5518.940 kb on - strand at 5518.970 kb on - strand at 5519.289 kb on + strand, within Pf1N1B4_4979 at 5519.289 kb on + strand, within Pf1N1B4_4979 at 5519.409 kb on - strand, within Pf1N1B4_4979 at 5519.431 kb on + strand, within Pf1N1B4_4979 at 5519.432 kb on - strand, within Pf1N1B4_4979 at 5519.432 kb on - strand, within Pf1N1B4_4979 at 5519.432 kb on - strand, within Pf1N1B4_4979 at 5519.453 kb on + strand, within Pf1N1B4_4979 at 5519.481 kb on + strand, within Pf1N1B4_4979 at 5520.135 kb on - strand, within Pf1N1B4_4980 at 5520.194 kb on + strand, within Pf1N1B4_4980 at 5520.428 kb on + strand at 5520.428 kb on + strand, within Pf1N1B4_4980 at 5520.600 kb on + strand at 5520.600 kb on + strand, within Pf1N1B4_4980 at 5520.601 kb on - strand, within Pf1N1B4_4980 at 5520.819 kb on + strand at 5520.840 kb on + strand at 5520.891 kb on - strand at 5520.991 kb on + strand, within Pf1N1B4_4981 at 5520.991 kb on + strand, within Pf1N1B4_4981 at 5521.018 kb on + strand, within Pf1N1B4_4981 at 5521.019 kb on - strand, within Pf1N1B4_4981 at 5521.081 kb on + strand, within Pf1N1B4_4981 at 5521.082 kb on - strand, within Pf1N1B4_4981 at 5521.130 kb on + strand, within Pf1N1B4_4981 at 5521.139 kb on + strand at 5521.234 kb on + strand, within Pf1N1B4_4981 at 5521.235 kb on - strand at 5521.235 kb on - strand, within Pf1N1B4_4981 at 5521.248 kb on - strand, within Pf1N1B4_4981 at 5521.588 kb on + strand at 5521.588 kb on + strand at 5521.588 kb on + strand at 5521.588 kb on + strand at 5521.589 kb on - strand at 5521.589 kb on - strand at 5521.589 kb on - strand at 5521.634 kb on + strand at 5521.634 kb on + strand at 5521.635 kb on - strand at 5521.635 kb on - strand at 5521.636 kb on + strand at 5521.636 kb on + strand at 5521.636 kb on + strand at 5521.644 kb on + strand at 5521.644 kb on + strand at 5521.648 kb on - strand at 5521.724 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 20 mM remove 5,518,886 - -0.5 5,518,938 - -0.5 5,518,938 - +0.1 5,518,940 - +1.1 5,518,970 - -1.1 5,519,289 + Pf1N1B4_4979 0.47 -0.1 5,519,289 + Pf1N1B4_4979 0.47 -0.0 5,519,409 - Pf1N1B4_4979 0.70 -0.2 5,519,431 + Pf1N1B4_4979 0.75 +0.8 5,519,432 - Pf1N1B4_4979 0.75 +0.1 5,519,432 - Pf1N1B4_4979 0.75 +0.3 5,519,432 - Pf1N1B4_4979 0.75 -1.3 5,519,453 + Pf1N1B4_4979 0.79 +1.5 5,519,481 + Pf1N1B4_4979 0.85 -0.9 5,520,135 - Pf1N1B4_4980 0.33 +0.7 5,520,194 + Pf1N1B4_4980 0.38 -0.5 5,520,428 + +0.5 5,520,428 + Pf1N1B4_4980 0.59 -0.5 5,520,600 + +0.9 5,520,600 + Pf1N1B4_4980 0.74 -1.3 5,520,601 - Pf1N1B4_4980 0.74 -0.5 5,520,819 + +0.1 5,520,840 + -0.0 5,520,891 - -0.7 5,520,991 + Pf1N1B4_4981 0.13 +0.5 5,520,991 + Pf1N1B4_4981 0.13 +0.1 5,521,018 + Pf1N1B4_4981 0.18 -0.8 5,521,019 - Pf1N1B4_4981 0.18 -0.5 5,521,081 + Pf1N1B4_4981 0.27 +0.2 5,521,082 - Pf1N1B4_4981 0.28 -0.1 5,521,130 + Pf1N1B4_4981 0.35 +1.0 5,521,139 + +1.0 5,521,234 + Pf1N1B4_4981 0.51 -0.4 5,521,235 - +0.5 5,521,235 - Pf1N1B4_4981 0.51 +2.8 5,521,248 - Pf1N1B4_4981 0.54 +1.2 5,521,588 + -0.8 5,521,588 + -1.1 5,521,588 + -0.4 5,521,588 + -0.1 5,521,589 - -0.8 5,521,589 - -0.5 5,521,589 - +0.5 5,521,634 + +2.5 5,521,634 + +1.2 5,521,635 - -0.9 5,521,635 - +1.5 5,521,636 + +1.1 5,521,636 + +0.9 5,521,636 + -0.6 5,521,644 + +1.1 5,521,644 + +0.5 5,521,648 - -0.5 5,521,724 - -1.6
Or see this region's nucleotide sequence