Experiment: acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_453 and Pf1N1B4_454 are separated by 34 nucleotides Pf1N1B4_454 and Pf1N1B4_455 are separated by 13 nucleotides Pf1N1B4_455 and Pf1N1B4_456 are separated by 104 nucleotides Pf1N1B4_456 and Pf1N1B4_457 are separated by 73 nucleotides
Pf1N1B4_453 - Phosphate:acyl-ACP acyltransferase PlsX, at 544,633 to 545,613
_453
Pf1N1B4_454 - LSU ribosomal protein L32p, at 545,648 to 545,830
_454
Pf1N1B4_455 - COG1399 protein, clustered with ribosomal protein L32p, at 545,844 to 546,371
_455
Pf1N1B4_456 - FIG146278: Maf/YceF/YhdE family protein, at 546,476 to 547,054
_456
Pf1N1B4_457 - Periplasmic serine proteases (ClpP class), at 547,128 to 548,144
_457
Position (kb) 546
547
548 Strain fitness (log2 ratio) -2
-1
0
1
2 at 545.554 kb on - strand at 546.486 kb on + strand at 546.487 kb on - strand at 546.487 kb on - strand at 546.489 kb on + strand at 546.490 kb on - strand at 546.609 kb on + strand, within Pf1N1B4_456 at 546.610 kb on - strand at 546.750 kb on + strand, within Pf1N1B4_456 at 546.750 kb on + strand, within Pf1N1B4_456 at 546.750 kb on + strand, within Pf1N1B4_456 at 546.750 kb on + strand, within Pf1N1B4_456 at 546.751 kb on - strand, within Pf1N1B4_456 at 546.751 kb on - strand, within Pf1N1B4_456 at 546.751 kb on - strand, within Pf1N1B4_456 at 546.751 kb on - strand, within Pf1N1B4_456 at 546.751 kb on - strand, within Pf1N1B4_456 at 546.849 kb on + strand, within Pf1N1B4_456 at 546.850 kb on - strand, within Pf1N1B4_456 at 546.888 kb on - strand, within Pf1N1B4_456 at 546.908 kb on + strand, within Pf1N1B4_456 at 546.908 kb on + strand, within Pf1N1B4_456 at 547.020 kb on + strand at 547.022 kb on - strand at 547.022 kb on - strand at 547.022 kb on - strand at 547.048 kb on - strand at 547.404 kb on - strand, within Pf1N1B4_457 at 547.513 kb on + strand, within Pf1N1B4_457 at 547.514 kb on - strand, within Pf1N1B4_457 at 547.514 kb on - strand, within Pf1N1B4_457 at 547.514 kb on - strand, within Pf1N1B4_457 at 547.514 kb on - strand, within Pf1N1B4_457 at 547.514 kb on - strand, within Pf1N1B4_457 at 547.514 kb on - strand, within Pf1N1B4_457 at 547.518 kb on - strand, within Pf1N1B4_457 at 547.612 kb on + strand, within Pf1N1B4_457 at 547.613 kb on - strand, within Pf1N1B4_457 at 547.639 kb on + strand at 547.639 kb on + strand, within Pf1N1B4_457 at 547.639 kb on + strand, within Pf1N1B4_457 at 547.640 kb on - strand, within Pf1N1B4_457 at 547.640 kb on - strand, within Pf1N1B4_457 at 547.640 kb on - strand, within Pf1N1B4_457 at 547.640 kb on - strand, within Pf1N1B4_457 at 547.640 kb on - strand, within Pf1N1B4_457 at 547.640 kb on - strand, within Pf1N1B4_457 at 547.640 kb on - strand, within Pf1N1B4_457 at 547.640 kb on - strand, within Pf1N1B4_457 at 547.640 kb on - strand, within Pf1N1B4_457 at 547.640 kb on - strand, within Pf1N1B4_457 at 547.642 kb on + strand, within Pf1N1B4_457 at 547.642 kb on + strand at 547.643 kb on - strand, within Pf1N1B4_457 at 547.688 kb on + strand at 547.689 kb on - strand, within Pf1N1B4_457 at 547.733 kb on - strand, within Pf1N1B4_457 at 547.873 kb on - strand, within Pf1N1B4_457 at 547.873 kb on - strand, within Pf1N1B4_457 at 547.873 kb on - strand, within Pf1N1B4_457 at 547.874 kb on + strand, within Pf1N1B4_457 at 547.875 kb on - strand, within Pf1N1B4_457 at 547.927 kb on - strand, within Pf1N1B4_457 at 547.927 kb on - strand, within Pf1N1B4_457 at 547.964 kb on - strand, within Pf1N1B4_457 at 548.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 20 mM remove 545,554 - +0.4 546,486 + +1.7 546,487 - +0.9 546,487 - +0.2 546,489 + +0.9 546,490 - +1.2 546,609 + Pf1N1B4_456 0.23 -0.9 546,610 - +0.6 546,750 + Pf1N1B4_456 0.47 -0.7 546,750 + Pf1N1B4_456 0.47 -1.0 546,750 + Pf1N1B4_456 0.47 -0.3 546,750 + Pf1N1B4_456 0.47 -0.1 546,751 - Pf1N1B4_456 0.47 -0.7 546,751 - Pf1N1B4_456 0.47 -0.9 546,751 - Pf1N1B4_456 0.47 -0.1 546,751 - Pf1N1B4_456 0.47 -0.9 546,751 - Pf1N1B4_456 0.47 -0.4 546,849 + Pf1N1B4_456 0.64 +0.0 546,850 - Pf1N1B4_456 0.65 -0.4 546,888 - Pf1N1B4_456 0.71 +0.0 546,908 + Pf1N1B4_456 0.75 -1.4 546,908 + Pf1N1B4_456 0.75 -0.2 547,020 + -0.7 547,022 - -1.7 547,022 - +0.2 547,022 - -0.7 547,048 - +0.6 547,404 - Pf1N1B4_457 0.27 -1.4 547,513 + Pf1N1B4_457 0.38 +0.9 547,514 - Pf1N1B4_457 0.38 -2.1 547,514 - Pf1N1B4_457 0.38 -1.1 547,514 - Pf1N1B4_457 0.38 -0.2 547,514 - Pf1N1B4_457 0.38 -1.7 547,514 - Pf1N1B4_457 0.38 -0.7 547,514 - Pf1N1B4_457 0.38 +1.3 547,518 - Pf1N1B4_457 0.38 -0.7 547,612 + Pf1N1B4_457 0.48 +0.2 547,613 - Pf1N1B4_457 0.48 +0.2 547,639 + +1.9 547,639 + Pf1N1B4_457 0.50 -0.4 547,639 + Pf1N1B4_457 0.50 -1.7 547,640 - Pf1N1B4_457 0.50 +1.5 547,640 - Pf1N1B4_457 0.50 -0.6 547,640 - Pf1N1B4_457 0.50 -0.1 547,640 - Pf1N1B4_457 0.50 -0.7 547,640 - Pf1N1B4_457 0.50 +0.2 547,640 - Pf1N1B4_457 0.50 +0.9 547,640 - Pf1N1B4_457 0.50 +0.6 547,640 - Pf1N1B4_457 0.50 -0.1 547,640 - Pf1N1B4_457 0.50 -0.1 547,640 - Pf1N1B4_457 0.50 +0.5 547,642 + Pf1N1B4_457 0.51 +0.3 547,642 + +0.9 547,643 - Pf1N1B4_457 0.51 -0.3 547,688 + +0.9 547,689 - Pf1N1B4_457 0.55 -1.5 547,733 - Pf1N1B4_457 0.59 +0.7 547,873 - Pf1N1B4_457 0.73 -0.8 547,873 - Pf1N1B4_457 0.73 +0.4 547,873 - Pf1N1B4_457 0.73 +1.2 547,874 + Pf1N1B4_457 0.73 +0.9 547,875 - Pf1N1B4_457 0.73 -0.9 547,927 - Pf1N1B4_457 0.79 +2.1 547,927 - Pf1N1B4_457 0.79 +0.0 547,964 - Pf1N1B4_457 0.82 -0.4 548,050 - -1.1
Or see this region's nucleotide sequence