Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4408

Experiment: acetate 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_4407 and Pf1N1B4_4408 are separated by 917 nucleotidesPf1N1B4_4408 and Pf1N1B4_4409 are separated by 402 nucleotidesPf1N1B4_4409 and Pf1N1B4_4410 are separated by 192 nucleotides Pf1N1B4_4407 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 4,867,442 to 4,871,356 _4407 Pf1N1B4_4408 - two-component response regulator, at 4,872,274 to 4,872,879 _4408 Pf1N1B4_4409 - hypothetical protein, at 4,873,282 to 4,873,398 _4409 Pf1N1B4_4410 - hypothetical protein, at 4,873,591 to 4,873,770 _4410 Position (kb) 4872 4873Strain fitness (log2 ratio) -1 0 1at 4871.478 kb on + strandat 4871.961 kb on + strandat 4872.344 kb on + strand, within Pf1N1B4_4408at 4872.471 kb on + strand, within Pf1N1B4_4408at 4872.738 kb on + strand, within Pf1N1B4_4408at 4873.005 kb on + strandat 4873.284 kb on - strandat 4873.284 kb on - strandat 4873.284 kb on - strandat 4873.284 kb on - strandat 4873.329 kb on - strand, within Pf1N1B4_4409at 4873.329 kb on - strandat 4873.476 kb on + strandat 4873.476 kb on + strandat 4873.476 kb on + strandat 4873.477 kb on - strandat 4873.477 kb on - strandat 4873.477 kb on - strandat 4873.477 kb on - strandat 4873.740 kb on + strand, within Pf1N1B4_4410at 4873.741 kb on - strand, within Pf1N1B4_4410at 4873.792 kb on - strandat 4873.835 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate 20 mM
remove
4,871,478 + -0.4
4,871,961 + -0.2
4,872,344 + Pf1N1B4_4408 0.12 -0.5
4,872,471 + Pf1N1B4_4408 0.33 -1.4
4,872,738 + Pf1N1B4_4408 0.77 -0.4
4,873,005 + -0.5
4,873,284 - +0.6
4,873,284 - +1.0
4,873,284 - +0.6
4,873,284 - +0.8
4,873,329 - Pf1N1B4_4409 0.40 -0.9
4,873,329 - +0.6
4,873,476 + -0.2
4,873,476 + +0.3
4,873,476 + +0.1
4,873,477 - -1.4
4,873,477 - -0.2
4,873,477 - +1.1
4,873,477 - +1.6
4,873,740 + Pf1N1B4_4410 0.83 +1.6
4,873,741 - Pf1N1B4_4410 0.83 -1.1
4,873,792 - +1.6
4,873,835 + +0.6

Or see this region's nucleotide sequence