Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3443

Experiment: acetate 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_3442 and Pf1N1B4_3443 are separated by 87 nucleotidesPf1N1B4_3443 and Pf1N1B4_3444 overlap by 1 nucleotides Pf1N1B4_3442 - Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109), at 3,837,039 to 3,838,058 _3442 Pf1N1B4_3443 - Arginine N-succinyltransferase (EC 2.3.1.109), at 3,838,146 to 3,839,171 _3443 Pf1N1B4_3444 - Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), at 3,839,171 to 3,840,637 _3444 Position (kb) 3838 3839 3840Strain fitness (log2 ratio) -2 -1 0 1at 3838.069 kb on + strandat 3838.077 kb on + strandat 3838.092 kb on + strandat 3838.095 kb on + strandat 3838.095 kb on + strandat 3838.142 kb on + strandat 3838.314 kb on + strand, within Pf1N1B4_3443at 3838.519 kb on + strand, within Pf1N1B4_3443at 3838.777 kb on - strand, within Pf1N1B4_3443at 3839.604 kb on - strand, within Pf1N1B4_3444

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate 20 mM
remove
3,838,069 + -0.9
3,838,077 + +0.9
3,838,092 + +0.9
3,838,095 + -0.7
3,838,095 + -0.6
3,838,142 + -0.4
3,838,314 + Pf1N1B4_3443 0.16 -1.8
3,838,519 + Pf1N1B4_3443 0.36 +1.4
3,838,777 - Pf1N1B4_3443 0.62 -0.8
3,839,604 - Pf1N1B4_3444 0.30 +0.5

Or see this region's nucleotide sequence