Experiment: acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_336 and Pf1N1B4_337 overlap by 11 nucleotides Pf1N1B4_337 and Pf1N1B4_338 are separated by 117 nucleotides
Pf1N1B4_336 - Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40), at 399,494 to 400,861
_336
Pf1N1B4_337 - O-antigen export system permease protein RfbD, at 400,851 to 401,669
_337
Pf1N1B4_338 - Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-), at 401,787 to 402,794
_338
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 399.852 kb on + strand, within Pf1N1B4_336 at 399.853 kb on - strand, within Pf1N1B4_336 at 399.853 kb on - strand, within Pf1N1B4_336 at 399.853 kb on - strand, within Pf1N1B4_336 at 399.856 kb on + strand, within Pf1N1B4_336 at 399.856 kb on + strand, within Pf1N1B4_336 at 399.856 kb on + strand at 399.856 kb on + strand, within Pf1N1B4_336 at 399.856 kb on + strand, within Pf1N1B4_336 at 399.856 kb on + strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.857 kb on - strand, within Pf1N1B4_336 at 399.858 kb on + strand, within Pf1N1B4_336 at 399.859 kb on - strand, within Pf1N1B4_336 at 399.859 kb on - strand, within Pf1N1B4_336 at 399.864 kb on + strand, within Pf1N1B4_336 at 399.864 kb on + strand, within Pf1N1B4_336 at 399.865 kb on - strand, within Pf1N1B4_336 at 399.865 kb on - strand, within Pf1N1B4_336 at 399.865 kb on - strand, within Pf1N1B4_336 at 399.865 kb on - strand, within Pf1N1B4_336 at 399.865 kb on - strand, within Pf1N1B4_336 at 399.958 kb on + strand, within Pf1N1B4_336 at 399.959 kb on - strand, within Pf1N1B4_336 at 399.959 kb on - strand, within Pf1N1B4_336 at 399.976 kb on + strand, within Pf1N1B4_336 at 399.977 kb on - strand, within Pf1N1B4_336 at 399.977 kb on - strand, within Pf1N1B4_336 at 399.977 kb on - strand, within Pf1N1B4_336 at 400.023 kb on - strand, within Pf1N1B4_336 at 400.131 kb on + strand, within Pf1N1B4_336 at 400.131 kb on + strand, within Pf1N1B4_336 at 400.131 kb on + strand, within Pf1N1B4_336 at 400.131 kb on + strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.132 kb on - strand, within Pf1N1B4_336 at 400.146 kb on + strand, within Pf1N1B4_336 at 400.262 kb on - strand, within Pf1N1B4_336 at 400.279 kb on + strand, within Pf1N1B4_336 at 400.316 kb on + strand, within Pf1N1B4_336 at 400.316 kb on + strand, within Pf1N1B4_336 at 400.317 kb on - strand, within Pf1N1B4_336 at 400.317 kb on - strand, within Pf1N1B4_336 at 400.355 kb on + strand, within Pf1N1B4_336 at 400.356 kb on - strand, within Pf1N1B4_336 at 400.356 kb on - strand, within Pf1N1B4_336 at 400.412 kb on - strand, within Pf1N1B4_336 at 400.412 kb on - strand, within Pf1N1B4_336 at 400.417 kb on - strand, within Pf1N1B4_336 at 400.417 kb on - strand, within Pf1N1B4_336 at 400.417 kb on - strand, within Pf1N1B4_336 at 400.417 kb on - strand, within Pf1N1B4_336 at 400.527 kb on + strand, within Pf1N1B4_336 at 400.528 kb on - strand, within Pf1N1B4_336 at 400.528 kb on - strand, within Pf1N1B4_336 at 400.752 kb on + strand at 400.752 kb on + strand at 400.752 kb on + strand at 400.752 kb on + strand at 400.806 kb on + strand at 400.807 kb on - strand at 400.807 kb on - strand at 400.810 kb on + strand at 400.810 kb on + strand at 400.811 kb on - strand at 400.849 kb on + strand at 400.850 kb on - strand at 400.850 kb on - strand at 400.850 kb on - strand at 400.850 kb on - strand at 400.850 kb on - strand at 400.852 kb on + strand at 400.874 kb on + strand at 400.928 kb on + strand at 400.929 kb on - strand at 400.930 kb on + strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.931 kb on - strand at 400.933 kb on + strand, within Pf1N1B4_337 at 400.933 kb on + strand, within Pf1N1B4_337 at 400.934 kb on - strand, within Pf1N1B4_337 at 400.934 kb on - strand at 400.934 kb on - strand, within Pf1N1B4_337 at 400.934 kb on - strand, within Pf1N1B4_337 at 400.960 kb on - strand, within Pf1N1B4_337 at 400.960 kb on - strand, within Pf1N1B4_337 at 401.216 kb on + strand, within Pf1N1B4_337 at 401.217 kb on - strand, within Pf1N1B4_337 at 401.217 kb on - strand, within Pf1N1B4_337 at 401.264 kb on + strand, within Pf1N1B4_337 at 401.316 kb on + strand, within Pf1N1B4_337 at 401.344 kb on - strand, within Pf1N1B4_337 at 401.386 kb on - strand, within Pf1N1B4_337 at 401.405 kb on + strand, within Pf1N1B4_337 at 401.406 kb on - strand, within Pf1N1B4_337 at 401.406 kb on - strand, within Pf1N1B4_337 at 401.432 kb on + strand, within Pf1N1B4_337 at 401.432 kb on + strand, within Pf1N1B4_337 at 401.655 kb on - strand at 401.675 kb on - strand at 401.735 kb on + strand at 402.084 kb on - strand, within Pf1N1B4_338 at 402.086 kb on - strand, within Pf1N1B4_338 at 402.086 kb on - strand, within Pf1N1B4_338 at 402.145 kb on + strand, within Pf1N1B4_338 at 402.198 kb on + strand, within Pf1N1B4_338 at 402.443 kb on - strand, within Pf1N1B4_338 at 402.474 kb on - strand at 402.554 kb on - strand, within Pf1N1B4_338
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 20 mM remove 399,852 + Pf1N1B4_336 0.26 +0.4 399,853 - Pf1N1B4_336 0.26 +0.1 399,853 - Pf1N1B4_336 0.26 +1.2 399,853 - Pf1N1B4_336 0.26 -0.2 399,856 + Pf1N1B4_336 0.26 +0.8 399,856 + Pf1N1B4_336 0.26 -0.4 399,856 + +0.8 399,856 + Pf1N1B4_336 0.26 -0.2 399,856 + Pf1N1B4_336 0.26 +0.8 399,856 + Pf1N1B4_336 0.26 -0.9 399,857 - Pf1N1B4_336 0.27 -0.2 399,857 - Pf1N1B4_336 0.27 -0.7 399,857 - Pf1N1B4_336 0.27 -1.3 399,857 - Pf1N1B4_336 0.27 -0.2 399,857 - Pf1N1B4_336 0.27 -2.1 399,857 - Pf1N1B4_336 0.27 -0.4 399,857 - Pf1N1B4_336 0.27 -0.9 399,857 - Pf1N1B4_336 0.27 +0.1 399,857 - Pf1N1B4_336 0.27 -2.0 399,857 - Pf1N1B4_336 0.27 +0.1 399,857 - Pf1N1B4_336 0.27 -1.3 399,857 - Pf1N1B4_336 0.27 +0.4 399,857 - Pf1N1B4_336 0.27 +0.1 399,857 - Pf1N1B4_336 0.27 -0.2 399,857 - Pf1N1B4_336 0.27 -1.0 399,857 - Pf1N1B4_336 0.27 -1.4 399,857 - Pf1N1B4_336 0.27 -0.2 399,857 - Pf1N1B4_336 0.27 -1.5 399,857 - Pf1N1B4_336 0.27 -2.5 399,857 - Pf1N1B4_336 0.27 -1.5 399,857 - Pf1N1B4_336 0.27 -0.3 399,857 - Pf1N1B4_336 0.27 -0.3 399,857 - Pf1N1B4_336 0.27 -0.2 399,857 - Pf1N1B4_336 0.27 -1.2 399,857 - Pf1N1B4_336 0.27 -0.6 399,857 - Pf1N1B4_336 0.27 -1.3 399,857 - Pf1N1B4_336 0.27 -0.4 399,857 - Pf1N1B4_336 0.27 -1.5 399,857 - Pf1N1B4_336 0.27 +0.3 399,857 - Pf1N1B4_336 0.27 -1.2 399,858 + Pf1N1B4_336 0.27 -0.4 399,859 - Pf1N1B4_336 0.27 -0.2 399,859 - Pf1N1B4_336 0.27 -0.2 399,864 + Pf1N1B4_336 0.27 +0.4 399,864 + Pf1N1B4_336 0.27 +0.8 399,865 - Pf1N1B4_336 0.27 +0.8 399,865 - Pf1N1B4_336 0.27 -1.5 399,865 - Pf1N1B4_336 0.27 -2.6 399,865 - Pf1N1B4_336 0.27 -1.2 399,865 - Pf1N1B4_336 0.27 -0.9 399,958 + Pf1N1B4_336 0.34 +0.5 399,959 - Pf1N1B4_336 0.34 -0.6 399,959 - Pf1N1B4_336 0.34 +0.2 399,976 + Pf1N1B4_336 0.35 +0.3 399,977 - Pf1N1B4_336 0.35 +0.6 399,977 - Pf1N1B4_336 0.35 -2.5 399,977 - Pf1N1B4_336 0.35 -2.3 400,023 - Pf1N1B4_336 0.39 -2.6 400,131 + Pf1N1B4_336 0.47 -1.0 400,131 + Pf1N1B4_336 0.47 +0.2 400,131 + Pf1N1B4_336 0.47 -1.2 400,131 + Pf1N1B4_336 0.47 -1.2 400,132 - Pf1N1B4_336 0.47 -0.3 400,132 - Pf1N1B4_336 0.47 -1.5 400,132 - Pf1N1B4_336 0.47 -1.3 400,132 - Pf1N1B4_336 0.47 +0.6 400,132 - Pf1N1B4_336 0.47 -0.3 400,132 - Pf1N1B4_336 0.47 -1.2 400,132 - Pf1N1B4_336 0.47 -2.5 400,132 - Pf1N1B4_336 0.47 +1.8 400,132 - Pf1N1B4_336 0.47 -0.2 400,132 - Pf1N1B4_336 0.47 +0.4 400,132 - Pf1N1B4_336 0.47 +0.6 400,132 - Pf1N1B4_336 0.47 -0.7 400,132 - Pf1N1B4_336 0.47 -0.8 400,132 - Pf1N1B4_336 0.47 +0.6 400,132 - Pf1N1B4_336 0.47 -0.2 400,132 - Pf1N1B4_336 0.47 -0.2 400,146 + Pf1N1B4_336 0.48 -0.2 400,262 - Pf1N1B4_336 0.56 -0.7 400,279 + Pf1N1B4_336 0.57 +0.8 400,316 + Pf1N1B4_336 0.60 -0.6 400,316 + Pf1N1B4_336 0.60 +0.3 400,317 - Pf1N1B4_336 0.60 +0.8 400,317 - Pf1N1B4_336 0.60 -0.2 400,355 + Pf1N1B4_336 0.63 +0.0 400,356 - Pf1N1B4_336 0.63 -0.6 400,356 - Pf1N1B4_336 0.63 -0.5 400,412 - Pf1N1B4_336 0.67 +0.8 400,412 - Pf1N1B4_336 0.67 +0.0 400,417 - Pf1N1B4_336 0.67 +1.4 400,417 - Pf1N1B4_336 0.67 -1.9 400,417 - Pf1N1B4_336 0.67 +0.3 400,417 - Pf1N1B4_336 0.67 -1.3 400,527 + Pf1N1B4_336 0.76 -0.2 400,528 - Pf1N1B4_336 0.76 +0.8 400,528 - Pf1N1B4_336 0.76 +0.1 400,752 + +0.6 400,752 + -0.7 400,752 + -0.2 400,752 + -0.4 400,806 + -1.1 400,807 - -1.5 400,807 - -0.3 400,810 + +0.1 400,810 + +0.8 400,811 - -2.5 400,849 + +0.4 400,850 - -0.6 400,850 - -0.5 400,850 - -1.1 400,850 - +0.4 400,850 - +0.3 400,852 + +1.8 400,874 + -0.2 400,928 + -0.2 400,929 - -1.1 400,930 + -0.7 400,931 - -0.4 400,931 - +1.7 400,931 - -0.5 400,931 - -0.2 400,931 - -0.9 400,931 - -1.7 400,931 - -1.5 400,931 - -2.0 400,931 - -0.5 400,933 + Pf1N1B4_337 0.10 -1.2 400,933 + Pf1N1B4_337 0.10 -1.5 400,934 - Pf1N1B4_337 0.10 -0.7 400,934 - +0.8 400,934 - Pf1N1B4_337 0.10 -2.2 400,934 - Pf1N1B4_337 0.10 -1.5 400,960 - Pf1N1B4_337 0.13 -0.9 400,960 - Pf1N1B4_337 0.13 +0.1 401,216 + Pf1N1B4_337 0.45 +0.8 401,217 - Pf1N1B4_337 0.45 -0.6 401,217 - Pf1N1B4_337 0.45 -2.2 401,264 + Pf1N1B4_337 0.50 +1.8 401,316 + Pf1N1B4_337 0.57 -0.4 401,344 - Pf1N1B4_337 0.60 +0.3 401,386 - Pf1N1B4_337 0.65 -1.2 401,405 + Pf1N1B4_337 0.68 +0.3 401,406 - Pf1N1B4_337 0.68 -1.5 401,406 - Pf1N1B4_337 0.68 -0.3 401,432 + Pf1N1B4_337 0.71 +0.8 401,432 + Pf1N1B4_337 0.71 -2.3 401,655 - -1.2 401,675 - +0.4 401,735 + +2.2 402,084 - Pf1N1B4_338 0.29 +2.4 402,086 - Pf1N1B4_338 0.30 -0.6 402,086 - Pf1N1B4_338 0.30 -0.8 402,145 + Pf1N1B4_338 0.36 +0.4 402,198 + Pf1N1B4_338 0.41 -1.7 402,443 - Pf1N1B4_338 0.65 +1.4 402,474 - -0.2 402,554 - Pf1N1B4_338 0.76 +2.2
Or see this region's nucleotide sequence