Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1511

Experiment: acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1509 and Pf1N1B4_1510 overlap by 8 nucleotidesPf1N1B4_1510 and Pf1N1B4_1511 are separated by 164 nucleotidesPf1N1B4_1511 and Pf1N1B4_1512 are separated by 4 nucleotides Pf1N1B4_1509 - Putative histidine ammonia-lyase protein, at 1,741,374 to 1,742,918 _1509 Pf1N1B4_1510 - FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein, at 1,742,911 to 1,743,336 _1510 Pf1N1B4_1511 - FIG027190: Putative transmembrane protein, at 1,743,501 to 1,744,067 _1511 Pf1N1B4_1512 - FIG021862: membrane protein, exporter, at 1,744,072 to 1,746,390 _1512 Position (kb) 1743 1744 1745Strain fitness (log2 ratio) -2 -1 0 1 2at 1742.886 kb on - strandat 1742.916 kb on + strandat 1742.954 kb on + strand, within Pf1N1B4_1510at 1743.002 kb on - strand, within Pf1N1B4_1510at 1743.002 kb on - strand, within Pf1N1B4_1510at 1743.002 kb on - strand, within Pf1N1B4_1510at 1743.002 kb on - strand, within Pf1N1B4_1510at 1743.010 kb on + strand, within Pf1N1B4_1510at 1743.010 kb on + strand, within Pf1N1B4_1510at 1743.011 kb on - strand, within Pf1N1B4_1510at 1743.011 kb on - strand, within Pf1N1B4_1510at 1743.011 kb on - strand, within Pf1N1B4_1510at 1743.011 kb on - strand, within Pf1N1B4_1510at 1743.011 kb on - strand, within Pf1N1B4_1510at 1743.058 kb on + strand, within Pf1N1B4_1510at 1743.059 kb on - strand, within Pf1N1B4_1510at 1743.059 kb on - strand, within Pf1N1B4_1510at 1743.059 kb on - strand, within Pf1N1B4_1510at 1743.115 kb on + strand, within Pf1N1B4_1510at 1743.116 kb on - strand, within Pf1N1B4_1510at 1743.116 kb on - strand, within Pf1N1B4_1510at 1743.116 kb on - strand, within Pf1N1B4_1510at 1743.116 kb on - strand, within Pf1N1B4_1510at 1743.116 kb on - strand, within Pf1N1B4_1510at 1743.119 kb on + strand, within Pf1N1B4_1510at 1743.119 kb on + strand, within Pf1N1B4_1510at 1743.120 kb on - strand, within Pf1N1B4_1510at 1743.120 kb on - strand, within Pf1N1B4_1510at 1743.120 kb on - strand, within Pf1N1B4_1510at 1743.120 kb on - strand, within Pf1N1B4_1510at 1743.120 kb on - strand, within Pf1N1B4_1510at 1743.120 kb on - strand, within Pf1N1B4_1510at 1743.197 kb on - strandat 1743.197 kb on - strand, within Pf1N1B4_1510at 1743.353 kb on + strandat 1743.354 kb on - strandat 1743.354 kb on - strandat 1743.431 kb on - strandat 1743.496 kb on + strandat 1743.497 kb on - strandat 1743.650 kb on - strand, within Pf1N1B4_1511at 1743.706 kb on - strand, within Pf1N1B4_1511at 1743.811 kb on + strand, within Pf1N1B4_1511at 1743.812 kb on - strand, within Pf1N1B4_1511at 1744.253 kb on + strandat 1744.603 kb on - strand, within Pf1N1B4_1512at 1744.771 kb on + strand, within Pf1N1B4_1512at 1744.771 kb on + strand, within Pf1N1B4_1512at 1744.771 kb on + strand, within Pf1N1B4_1512at 1744.772 kb on - strand, within Pf1N1B4_1512at 1744.772 kb on - strand, within Pf1N1B4_1512at 1744.772 kb on - strand, within Pf1N1B4_1512at 1744.772 kb on - strand, within Pf1N1B4_1512at 1744.772 kb on - strand, within Pf1N1B4_1512at 1744.772 kb on - strand, within Pf1N1B4_1512at 1744.772 kb on - strand, within Pf1N1B4_1512at 1745.020 kb on + strand, within Pf1N1B4_1512at 1745.020 kb on + strand, within Pf1N1B4_1512at 1745.020 kb on + strand, within Pf1N1B4_1512

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate 20 mM
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1,742,886 - -0.0
1,742,916 + +0.7
1,742,954 + Pf1N1B4_1510 0.10 +0.8
1,743,002 - Pf1N1B4_1510 0.21 +1.1
1,743,002 - Pf1N1B4_1510 0.21 +1.6
1,743,002 - Pf1N1B4_1510 0.21 +0.3
1,743,002 - Pf1N1B4_1510 0.21 +0.6
1,743,010 + Pf1N1B4_1510 0.23 +0.6
1,743,010 + Pf1N1B4_1510 0.23 +1.3
1,743,011 - Pf1N1B4_1510 0.23 +0.3
1,743,011 - Pf1N1B4_1510 0.23 +0.3
1,743,011 - Pf1N1B4_1510 0.23 -2.1
1,743,011 - Pf1N1B4_1510 0.23 +0.1
1,743,011 - Pf1N1B4_1510 0.23 +0.2
1,743,058 + Pf1N1B4_1510 0.35 -1.3
1,743,059 - Pf1N1B4_1510 0.35 +1.1
1,743,059 - Pf1N1B4_1510 0.35 +1.0
1,743,059 - Pf1N1B4_1510 0.35 -0.3
1,743,115 + Pf1N1B4_1510 0.48 +0.1
1,743,116 - Pf1N1B4_1510 0.48 +0.1
1,743,116 - Pf1N1B4_1510 0.48 +1.6
1,743,116 - Pf1N1B4_1510 0.48 -1.0
1,743,116 - Pf1N1B4_1510 0.48 -0.4
1,743,116 - Pf1N1B4_1510 0.48 +1.1
1,743,119 + Pf1N1B4_1510 0.49 -0.1
1,743,119 + Pf1N1B4_1510 0.49 +0.9
1,743,120 - Pf1N1B4_1510 0.49 +2.1
1,743,120 - Pf1N1B4_1510 0.49 +0.7
1,743,120 - Pf1N1B4_1510 0.49 -0.0
1,743,120 - Pf1N1B4_1510 0.49 -2.6
1,743,120 - Pf1N1B4_1510 0.49 +0.7
1,743,120 - Pf1N1B4_1510 0.49 -1.0
1,743,197 - +1.9
1,743,197 - Pf1N1B4_1510 0.67 -0.1
1,743,353 + +2.2
1,743,354 - +0.7
1,743,354 - -0.1
1,743,431 - +0.3
1,743,496 + +0.6
1,743,497 - +0.9
1,743,650 - Pf1N1B4_1511 0.26 -0.4
1,743,706 - Pf1N1B4_1511 0.36 +0.3
1,743,811 + Pf1N1B4_1511 0.55 -0.9
1,743,812 - Pf1N1B4_1511 0.55 -0.7
1,744,253 + +0.8
1,744,603 - Pf1N1B4_1512 0.23 +1.3
1,744,771 + Pf1N1B4_1512 0.30 +0.2
1,744,771 + Pf1N1B4_1512 0.30 +0.1
1,744,771 + Pf1N1B4_1512 0.30 -0.3
1,744,772 - Pf1N1B4_1512 0.30 -0.3
1,744,772 - Pf1N1B4_1512 0.30 -0.5
1,744,772 - Pf1N1B4_1512 0.30 +0.7
1,744,772 - Pf1N1B4_1512 0.30 +1.0
1,744,772 - Pf1N1B4_1512 0.30 +0.3
1,744,772 - Pf1N1B4_1512 0.30 -0.9
1,744,772 - Pf1N1B4_1512 0.30 +0.4
1,745,020 + Pf1N1B4_1512 0.41 -0.0
1,745,020 + Pf1N1B4_1512 0.41 +0.1
1,745,020 + Pf1N1B4_1512 0.41 +0.3

Or see this region's nucleotide sequence