Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03938

Experiment: PYE with nitrite 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00785 and CCNA_03938 are separated by 183 nucleotidesCCNA_03938 and CCNA_00787 are separated by 111 nucleotides CCNA_00785: CCNA_00785 - tRNA methyltransferase/FAD-dependent oxidoreductase MnmC, at 848,157 to 849,932 _00785 CCNA_03938: CCNA_03938 - hypothetical protein, at 850,116 to 850,442 _03938 CCNA_00787: CCNA_00787 - chemotaxis motA protein, at 850,554 to 851,420 _00787 Position (kb) 850 851Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 849.140 kb on - strand, within CCNA_00785at 849.205 kb on + strand, within CCNA_00785at 849.243 kb on - strand, within CCNA_00785at 849.248 kb on + strand, within CCNA_00785at 849.257 kb on - strand, within CCNA_00785at 849.302 kb on - strand, within CCNA_00785at 849.360 kb on + strand, within CCNA_00785at 849.417 kb on + strand, within CCNA_00785at 849.425 kb on - strand, within CCNA_00785at 849.425 kb on - strand, within CCNA_00785at 849.425 kb on - strand, within CCNA_00785at 849.427 kb on + strand, within CCNA_00785at 849.489 kb on - strand, within CCNA_00785at 849.489 kb on - strand, within CCNA_00785at 849.507 kb on + strand, within CCNA_00785at 849.507 kb on + strand, within CCNA_00785at 849.507 kb on + strand, within CCNA_00785at 849.507 kb on + strand, within CCNA_00785at 849.507 kb on + strand, within CCNA_00785at 849.507 kb on + strand, within CCNA_00785at 849.507 kb on + strand, within CCNA_00785at 849.515 kb on - strand, within CCNA_00785at 849.515 kb on - strand, within CCNA_00785at 849.515 kb on - strand, within CCNA_00785at 849.515 kb on - strand, within CCNA_00785at 849.515 kb on - strand, within CCNA_00785at 849.515 kb on - strand, within CCNA_00785at 849.515 kb on - strand, within CCNA_00785at 849.515 kb on - strand, within CCNA_00785at 849.515 kb on - strand, within CCNA_00785at 849.515 kb on - strand, within CCNA_00785at 849.542 kb on + strand, within CCNA_00785at 849.542 kb on + strand, within CCNA_00785at 849.550 kb on - strand, within CCNA_00785at 849.550 kb on - strand, within CCNA_00785at 849.592 kb on - strand, within CCNA_00785at 849.602 kb on + strand, within CCNA_00785at 849.602 kb on + strand, within CCNA_00785at 849.610 kb on - strand, within CCNA_00785at 849.610 kb on - strand, within CCNA_00785at 849.624 kb on - strand, within CCNA_00785at 849.624 kb on - strand, within CCNA_00785at 849.661 kb on + strand, within CCNA_00785at 849.669 kb on + strand, within CCNA_00785at 849.677 kb on - strand, within CCNA_00785at 849.729 kb on + strand, within CCNA_00785at 849.729 kb on + strand, within CCNA_00785at 849.729 kb on + strand, within CCNA_00785at 849.737 kb on - strand, within CCNA_00785at 849.737 kb on - strand, within CCNA_00785at 849.761 kb on + strandat 849.761 kb on + strandat 849.769 kb on - strandat 849.857 kb on - strandat 849.867 kb on + strandat 849.870 kb on - strandat 849.872 kb on - strandat 849.879 kb on - strandat 849.880 kb on - strandat 849.880 kb on - strandat 849.928 kb on + strandat 849.935 kb on + strandat 849.943 kb on - strandat 849.948 kb on + strandat 849.948 kb on + strandat 849.956 kb on - strandat 849.956 kb on - strandat 849.966 kb on - strandat 849.966 kb on - strandat 849.977 kb on + strandat 849.989 kb on + strandat 850.035 kb on - strandat 850.035 kb on - strandat 850.037 kb on + strandat 850.037 kb on + strandat 850.045 kb on - strandat 850.045 kb on - strandat 850.057 kb on - strandat 850.057 kb on - strandat 850.057 kb on - strandat 850.057 kb on - strandat 850.062 kb on - strandat 850.062 kb on - strandat 850.080 kb on + strandat 850.081 kb on + strandat 850.089 kb on - strandat 850.099 kb on - strandat 850.126 kb on + strandat 850.126 kb on + strandat 850.134 kb on - strandat 850.158 kb on - strand, within CCNA_03938at 850.273 kb on + strand, within CCNA_03938at 850.280 kb on - strand, within CCNA_03938at 850.281 kb on - strand, within CCNA_03938at 850.314 kb on - strand, within CCNA_03938at 850.314 kb on - strand, within CCNA_03938at 850.321 kb on + strand, within CCNA_03938at 850.327 kb on + strand, within CCNA_03938at 850.353 kb on + strand, within CCNA_03938at 850.391 kb on - strand, within CCNA_03938at 850.424 kb on + strandat 850.430 kb on + strandat 850.430 kb on + strandat 850.430 kb on + strandat 850.431 kb on + strandat 850.438 kb on + strandat 850.438 kb on - strandat 850.438 kb on - strandat 850.438 kb on - strandat 850.446 kb on - strandat 850.517 kb on - strandat 850.526 kb on + strandat 850.554 kb on - strandat 850.582 kb on + strandat 850.726 kb on + strand, within CCNA_00787at 850.760 kb on + strand, within CCNA_00787at 850.761 kb on + strand, within CCNA_00787at 850.763 kb on - strand, within CCNA_00787at 850.768 kb on - strand, within CCNA_00787at 850.768 kb on - strand, within CCNA_00787at 850.768 kb on - strand, within CCNA_00787at 850.768 kb on - strand, within CCNA_00787at 850.769 kb on - strand, within CCNA_00787at 850.776 kb on - strand, within CCNA_00787at 850.780 kb on + strand, within CCNA_00787at 850.826 kb on - strand, within CCNA_00787at 850.855 kb on - strand, within CCNA_00787at 850.887 kb on + strand, within CCNA_00787at 850.887 kb on + strand, within CCNA_00787at 850.924 kb on - strand, within CCNA_00787at 850.931 kb on - strand, within CCNA_00787at 850.931 kb on - strand, within CCNA_00787at 850.936 kb on - strand, within CCNA_00787at 850.953 kb on - strand, within CCNA_00787at 850.981 kb on + strand, within CCNA_00787at 850.991 kb on + strand, within CCNA_00787at 850.999 kb on - strand, within CCNA_00787at 850.999 kb on - strand, within CCNA_00787at 851.022 kb on - strand, within CCNA_00787at 851.027 kb on + strand, within CCNA_00787at 851.033 kb on + strand, within CCNA_00787at 851.035 kb on - strand, within CCNA_00787at 851.045 kb on - strand, within CCNA_00787at 851.077 kb on - strand, within CCNA_00787at 851.080 kb on + strand, within CCNA_00787at 851.137 kb on + strand, within CCNA_00787at 851.137 kb on + strand, within CCNA_00787at 851.145 kb on - strand, within CCNA_00787at 851.183 kb on + strand, within CCNA_00787at 851.183 kb on - strand, within CCNA_00787at 851.193 kb on + strand, within CCNA_00787at 851.196 kb on - strand, within CCNA_00787at 851.196 kb on - strand, within CCNA_00787at 851.201 kb on + strand, within CCNA_00787at 851.201 kb on - strand, within CCNA_00787at 851.201 kb on - strand, within CCNA_00787at 851.207 kb on + strand, within CCNA_00787at 851.208 kb on - strand, within CCNA_00787at 851.243 kb on + strand, within CCNA_00787at 851.248 kb on + strand, within CCNA_00787at 851.251 kb on - strand, within CCNA_00787at 851.256 kb on - strand, within CCNA_00787at 851.309 kb on + strand, within CCNA_00787at 851.337 kb on - strandat 851.350 kb on - strandat 851.373 kb on + strandat 851.373 kb on + strandat 851.381 kb on - strandat 851.399 kb on - strandat 851.419 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 2.5 mM
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849,140 - CCNA_00785 0.55 +1.4
849,205 + CCNA_00785 0.59 -0.9
849,243 - CCNA_00785 0.61 +0.5
849,248 + CCNA_00785 0.61 -1.6
849,257 - CCNA_00785 0.62 -0.1
849,302 - CCNA_00785 0.64 +0.3
849,360 + CCNA_00785 0.68 -2.3
849,417 + CCNA_00785 0.71 -0.1
849,425 - CCNA_00785 0.71 +1.1
849,425 - CCNA_00785 0.71 +0.3
849,425 - CCNA_00785 0.71 +0.5
849,427 + CCNA_00785 0.72 +0.7
849,489 - CCNA_00785 0.75 +2.2
849,489 - CCNA_00785 0.75 -0.0
849,507 + CCNA_00785 0.76 -1.7
849,507 + CCNA_00785 0.76 -1.7
849,507 + CCNA_00785 0.76 -1.0
849,507 + CCNA_00785 0.76 +0.1
849,507 + CCNA_00785 0.76 -0.5
849,507 + CCNA_00785 0.76 +0.2
849,507 + CCNA_00785 0.76 -2.1
849,515 - CCNA_00785 0.76 +0.0
849,515 - CCNA_00785 0.76 +0.9
849,515 - CCNA_00785 0.76 +0.4
849,515 - CCNA_00785 0.76 -0.3
849,515 - CCNA_00785 0.76 +0.1
849,515 - CCNA_00785 0.76 -0.1
849,515 - CCNA_00785 0.76 +1.4
849,515 - CCNA_00785 0.76 +1.7
849,515 - CCNA_00785 0.76 -0.4
849,515 - CCNA_00785 0.76 +0.5
849,542 + CCNA_00785 0.78 +0.4
849,542 + CCNA_00785 0.78 +0.1
849,550 - CCNA_00785 0.78 +0.7
849,550 - CCNA_00785 0.78 +0.2
849,592 - CCNA_00785 0.81 +0.5
849,602 + CCNA_00785 0.81 -2.2
849,602 + CCNA_00785 0.81 +1.3
849,610 - CCNA_00785 0.82 +1.9
849,610 - CCNA_00785 0.82 +0.1
849,624 - CCNA_00785 0.83 +0.6
849,624 - CCNA_00785 0.83 +0.5
849,661 + CCNA_00785 0.85 +0.9
849,669 + CCNA_00785 0.85 +1.2
849,677 - CCNA_00785 0.86 +0.6
849,729 + CCNA_00785 0.89 -0.6
849,729 + CCNA_00785 0.89 +1.9
849,729 + CCNA_00785 0.89 +0.6
849,737 - CCNA_00785 0.89 -0.1
849,737 - CCNA_00785 0.89 -2.2
849,761 + -0.5
849,761 + +0.1
849,769 - -0.8
849,857 - +1.2
849,867 + +0.9
849,870 - +1.8
849,872 - +2.6
849,879 - +0.9
849,880 - -0.3
849,880 - +0.0
849,928 + -1.4
849,935 + -0.0
849,943 - +0.3
849,948 + -0.7
849,948 + -2.2
849,956 - +0.4
849,956 - +1.7
849,966 - +1.2
849,966 - -0.7
849,977 + +0.7
849,989 + -0.3
850,035 - +2.1
850,035 - +1.9
850,037 + +1.7
850,037 + +1.5
850,045 - +1.7
850,045 - +2.3
850,057 - +2.4
850,057 - +2.7
850,057 - +2.0
850,057 - +2.4
850,062 - +1.9
850,062 - +2.0
850,080 + +3.3
850,081 + +1.1
850,089 - +2.4
850,099 - +2.2
850,126 + +0.8
850,126 + -0.0
850,134 - +2.3
850,158 - CCNA_03938 0.13 +1.6
850,273 + CCNA_03938 0.48 -0.4
850,280 - CCNA_03938 0.50 +2.6
850,281 - CCNA_03938 0.50 +2.5
850,314 - CCNA_03938 0.61 +2.4
850,314 - CCNA_03938 0.61 +2.2
850,321 + CCNA_03938 0.63 -0.7
850,327 + CCNA_03938 0.65 -1.3
850,353 + CCNA_03938 0.72 -3.0
850,391 - CCNA_03938 0.84 +2.1
850,424 + +2.7
850,430 + +0.2
850,430 + +1.5
850,430 + +0.4
850,431 + +0.3
850,438 + +1.5
850,438 - +1.7
850,438 - +0.2
850,438 - +2.1
850,446 - +0.7
850,517 - +2.4
850,526 + -0.4
850,554 - +0.9
850,582 + -0.4
850,726 + CCNA_00787 0.20 -0.1
850,760 + CCNA_00787 0.24 -0.3
850,761 + CCNA_00787 0.24 -0.0
850,763 - CCNA_00787 0.24 +1.8
850,768 - CCNA_00787 0.25 +1.0
850,768 - CCNA_00787 0.25 +1.1
850,768 - CCNA_00787 0.25 +0.3
850,768 - CCNA_00787 0.25 +1.6
850,769 - CCNA_00787 0.25 +0.5
850,776 - CCNA_00787 0.26 +1.2
850,780 + CCNA_00787 0.26 -0.8
850,826 - CCNA_00787 0.31 +1.3
850,855 - CCNA_00787 0.35 +2.5
850,887 + CCNA_00787 0.38 -0.6
850,887 + CCNA_00787 0.38 -0.2
850,924 - CCNA_00787 0.43 +1.3
850,931 - CCNA_00787 0.43 +0.4
850,931 - CCNA_00787 0.43 +1.5
850,936 - CCNA_00787 0.44 +1.2
850,953 - CCNA_00787 0.46 +0.3
850,981 + CCNA_00787 0.49 -0.9
850,991 + CCNA_00787 0.50 -1.5
850,999 - CCNA_00787 0.51 +1.6
850,999 - CCNA_00787 0.51 +1.5
851,022 - CCNA_00787 0.54 +1.4
851,027 + CCNA_00787 0.55 -0.3
851,033 + CCNA_00787 0.55 +1.2
851,035 - CCNA_00787 0.55 +1.1
851,045 - CCNA_00787 0.57 -0.2
851,077 - CCNA_00787 0.60 +1.5
851,080 + CCNA_00787 0.61 -0.6
851,137 + CCNA_00787 0.67 -0.5
851,137 + CCNA_00787 0.67 +1.8
851,145 - CCNA_00787 0.68 +0.1
851,183 + CCNA_00787 0.73 -0.2
851,183 - CCNA_00787 0.73 -0.8
851,193 + CCNA_00787 0.74 -0.6
851,196 - CCNA_00787 0.74 +0.8
851,196 - CCNA_00787 0.74 +0.5
851,201 + CCNA_00787 0.75 +0.3
851,201 - CCNA_00787 0.75 +0.6
851,201 - CCNA_00787 0.75 +0.1
851,207 + CCNA_00787 0.75 +0.2
851,208 - CCNA_00787 0.75 +1.1
851,243 + CCNA_00787 0.79 +0.2
851,248 + CCNA_00787 0.80 +1.3
851,251 - CCNA_00787 0.80 +1.8
851,256 - CCNA_00787 0.81 +2.0
851,309 + CCNA_00787 0.87 -0.4
851,337 - +1.3
851,350 - +1.3
851,373 + -1.7
851,373 + +0.1
851,381 - -0.1
851,399 - +1.4
851,419 + -1.5

Or see this region's nucleotide sequence