Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03367

Experiment: PYE with nitrite 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 2.5 mM
3,543,546	-		CCNA_03365	0.46	-0.5
3,543,551	+		CCNA_03365	0.47	-1.2
3,543,551	+		CCNA_03365	0.47	+0.1
3,543,638	-		CCNA_03365	0.58	-0.2
3,543,655	-		CCNA_03365	0.60	-1.9
3,543,682	-		CCNA_03365	0.64	-0.9
3,543,686	-		CCNA_03365	0.64	+1.8
3,543,727	+		CCNA_03365	0.70	-0.2
3,543,727	+		CCNA_03365	0.70	-0.1
3,543,744	+		CCNA_03365	0.72	-3.1
3,543,744	+		CCNA_03365	0.72	+0.9
3,543,749	+		CCNA_03365	0.73	-0.8
3,543,752	-		CCNA_03365	0.73	-0.5
3,543,829	-		CCNA_03365	0.83	+0.1
3,543,837	-		CCNA_03365	0.84	-0.1
3,543,846	-		CCNA_03365	0.85	-0.6
3,543,851	+		CCNA_03365	0.86	+1.2
3,543,863	+		CCNA_03365	0.87	+0.6
3,543,932	+				-0.8
3,543,933	+				+0.1
3,543,952	+				+0.6
3,543,960	-				-0.9
3,543,985	+				-2.1
3,543,993	-				-0.5
3,543,993	-				+0.2
3,544,033	+		CCNA_03366	0.17	+0.1
3,544,082	-		CCNA_03366	0.28	-0.3
3,544,107	+		CCNA_03366	0.34	+0.7
3,544,120	+		CCNA_03366	0.36	+0.1
3,544,120	+		CCNA_03366	0.36	-1.2
3,544,137	+		CCNA_03366	0.40	-0.3
3,544,137	+		CCNA_03366	0.40	-0.8
3,544,137	+		CCNA_03366	0.40	-0.7
3,544,145	-		CCNA_03366	0.42	-0.8
3,544,145	-		CCNA_03366	0.42	+0.2
3,544,147	+		CCNA_03366	0.42	+0.6
3,544,147	+		CCNA_03366	0.42	-0.5
3,544,147	+		CCNA_03366	0.42	-1.0
3,544,154	-		CCNA_03366	0.44	-0.4
3,544,155	-		CCNA_03366	0.44	-0.7
3,544,155	-		CCNA_03366	0.44	+0.1
3,544,155	-		CCNA_03366	0.44	-1.0
3,544,155	-		CCNA_03366	0.44	-0.5
3,544,155	-		CCNA_03366	0.44	-0.5
3,544,169	+		CCNA_03366	0.47	+0.8
3,544,177	-		CCNA_03366	0.49	+0.9
3,544,214	+		CCNA_03366	0.57	-1.0
3,544,255	+		CCNA_03366	0.66	+0.8
3,544,263	-		CCNA_03366	0.68	+0.6
3,544,269	+		CCNA_03366	0.69	-0.1
3,544,293	-		CCNA_03366	0.75	-0.5
3,544,303	+		CCNA_03366	0.77	-0.3
3,544,326	+		CCNA_03366	0.82	+0.5
3,544,326	+		CCNA_03366	0.82	+0.4
3,544,326	+		CCNA_03366	0.82	-0.3
3,544,326	+		CCNA_03366	0.82	+2.0
3,544,326	+		CCNA_03366	0.82	+0.6
3,544,326	+		CCNA_03366	0.82	+0.4
3,544,326	+		CCNA_03366	0.82	-0.1
3,544,326	+		CCNA_03366	0.82	+0.1
3,544,329	-		CCNA_03366	0.83	+0.4
3,544,334	-		CCNA_03366	0.84	-0.1
3,544,334	-		CCNA_03366	0.84	-0.9
3,544,334	-		CCNA_03366	0.84	-1.4
3,544,334	-		CCNA_03366	0.84	+0.0
3,544,334	-		CCNA_03366	0.84	-2.0
3,544,373	+				+1.2
3,544,373	+				+0.0
3,544,381	-				+0.8
3,544,386	-				-0.2
3,544,632	-		CCNA_03367	0.20	+0.1
3,544,638	-		CCNA_03367	0.21	-0.7
3,544,661	+		CCNA_03367	0.26	-0.6
3,544,669	-		CCNA_03367	0.28	-1.3
3,544,677	+		CCNA_03367	0.29	+0.9
3,544,679	-		CCNA_03367	0.30	-0.8
3,544,696	-		CCNA_03367	0.33	-2.3
3,544,699	+		CCNA_03367	0.34	+0.2
3,544,702	-		CCNA_03367	0.34	+0.7
3,544,704	+		CCNA_03367	0.35	-0.5
3,544,709	+		CCNA_03367	0.36	+1.1
3,544,731	+		CCNA_03367	0.40	+0.1
3,544,747	-		CCNA_03367	0.43	-2.1
3,544,814	+		CCNA_03367	0.56	+1.9
3,544,822	-		CCNA_03367	0.58	+0.6
3,544,904	+		CCNA_03367	0.74	-1.5
3,544,905	-		CCNA_03367	0.75	-0.1
3,544,922	+		CCNA_03367	0.78	-0.7
3,544,932	-		CCNA_03367	0.80	+1.2
3,544,994	-				+0.0
3,545,088	+		CCNA_03368	0.14	+0.6
3,545,163	+		CCNA_03368	0.31	-1.3
3,545,208	-		CCNA_03368	0.42	-0.9
3,545,248	+		CCNA_03368	0.51	+0.4
3,545,257	+		CCNA_03368	0.53	-0.8
3,545,265	-		CCNA_03368	0.55	-1.3
3,545,265	-		CCNA_03368	0.55	-1.3
3,545,282	+		CCNA_03368	0.59	+0.8
3,545,290	-		CCNA_03368	0.61	-0.2
3,545,290	-		CCNA_03368	0.61	-0.3
3,545,292	+		CCNA_03368	0.62	+0.3
3,545,294	-		CCNA_03368	0.62	-0.3
3,545,310	+		CCNA_03368	0.66	-0.7
3,545,312	-		CCNA_03368	0.66	+0.1
3,545,316	+		CCNA_03368	0.67	-1.4
3,545,324	+		CCNA_03368	0.69	+0.5
3,545,326	+		CCNA_03368	0.69	-2.1
3,545,332	-		CCNA_03368	0.71	-0.3
3,545,342	-		CCNA_03368	0.73	+0.7
3,545,390	+		CCNA_03368	0.84	-0.2
3,545,398	-		CCNA_03368	0.86	+0.6
3,545,408	-		CCNA_03368	0.89	+1.5
3,545,445	+				-2.2
3,545,445	+				-0.5
3,545,445	+				+0.4
3,545,445	+				+1.3
3,545,453	-				+1.1
3,545,453	-				+0.0
3,545,453	-				-0.2
3,545,453	-				+0.6
3,545,458	-				+1.1
3,545,460	+				+0.5
3,545,468	-				+1.6
3,545,468	-				+1.8
3,545,468	-				+0.8
3,545,470	+				+0.1
3,545,470	+				-1.1
3,545,475	+				+0.1
3,545,478	-				+0.5
3,545,478	-				+1.6
3,545,478	-				+1.2
3,545,478	-				+1.6
3,545,478	-				+0.4
3,545,478	-				+0.3
3,545,478	-				+1.9
3,545,478	-				+1.3
3,545,483	-				+0.8
3,545,485	+				-0.4
3,545,490	+				+0.1
3,545,509	-				+1.1
3,545,509	-				+0.9
3,545,509	-				+1.4
3,545,514	-				+0.3
3,545,529	-		CCNA_03369	0.11	+0.4
3,545,624	+		CCNA_03369	0.27	-1.3
3,545,666	-		CCNA_03369	0.35	+0.8
3,545,672	+		CCNA_03369	0.36	-0.5
3,545,680	-		CCNA_03369	0.37	+0.2
3,545,680	-		CCNA_03369	0.37	+1.7
3,545,688	-		CCNA_03369	0.38	+1.1
3,545,693	-		CCNA_03369	0.39	+1.7
3,545,751	+		CCNA_03369	0.49	-1.8
3,545,761	+		CCNA_03369	0.51	+0.2
3,545,761	+		CCNA_03369	0.51	-0.4
3,545,761	+		CCNA_03369	0.51	+0.3
3,545,770	+		CCNA_03369	0.53	+0.1
3,545,776	-		CCNA_03369	0.54	+0.5
3,545,795	-		CCNA_03369	0.57	+2.9
3,545,805	-		CCNA_03369	0.59	+1.5
3,545,828	-		CCNA_03369	0.63	+0.4
3,545,828	-		CCNA_03369	0.63	+0.7
3,545,852	+		CCNA_03369	0.67	-0.9
3,545,852	+		CCNA_03369	0.67	-1.9
3,545,890	+		CCNA_03369	0.73	-0.1
3,545,923	+		CCNA_03369	0.79	-0.3
3,545,923	+		CCNA_03369	0.79	+0.2
3,545,931	-		CCNA_03369	0.81	+0.3
3,545,931	-		CCNA_03369	0.81	+0.3
3,545,931	-		CCNA_03369	0.81	-0.8
3,545,931	-		CCNA_03369	0.81	+0.9
3,545,974	-		CCNA_03369	0.88	+0.0