Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01527

Experiment: PYE with nitrite 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 2.5 mM
1,634,283	+				+2.5
1,634,290	-				-0.9
1,634,297	-				-0.8
1,634,345	+		CCNA_01525	0.19	+2.3
1,634,347	+		CCNA_01525	0.19	+2.6
1,634,355	-		CCNA_01525	0.21	+1.1
1,634,417	-		CCNA_01525	0.35	+0.2
1,634,417	-		CCNA_01525	0.35	-1.7
1,634,515	+		CCNA_01525	0.58	+2.6
1,634,534	+		CCNA_01525	0.63	+2.4
1,634,542	-		CCNA_01525	0.65	+0.7
1,634,545	+		CCNA_01525	0.65	+2.6
1,634,561	-		CCNA_01525	0.69	+0.9
1,634,564	+		CCNA_01525	0.70	+2.7
1,634,565	+		CCNA_01525	0.70	+1.5
1,634,592	+		CCNA_01525	0.77	+2.6
1,634,599	+		CCNA_01525	0.78	+2.5
1,634,612	+		CCNA_01525	0.81	+2.3
1,634,641	+		CCNA_01525	0.88	+2.3
1,634,650	-				-1.7
1,634,655	+				+2.2
1,634,686	+				+2.3
1,634,792	+		CCNA_01526	0.39	+2.9
1,634,806	-		CCNA_01526	0.43	+2.8
1,634,812	+		CCNA_01526	0.44	+3.3
1,634,814	-		CCNA_01526	0.45	-0.1
1,634,862	+		CCNA_01526	0.58	+2.6
1,634,862	+		CCNA_01526	0.58	+2.6
1,634,865	-		CCNA_01526	0.59	-2.0
1,634,880	-		CCNA_01526	0.63	-0.2
1,634,895	+		CCNA_01526	0.67	+2.9
1,634,908	+		CCNA_01526	0.71	+3.1
1,634,929	+		CCNA_01526	0.77	+2.9
1,634,956	+		CCNA_01526	0.84	+3.1
1,634,979	+				+2.9
1,635,030	+				+2.2
1,635,039	+				+2.4
1,635,057	+				+2.4
1,635,256	+				+1.6
1,635,285	-				-2.3
1,635,286	-				+0.6
1,635,337	+				+1.7
1,635,342	+				+1.6
1,635,342	+				+1.2
1,635,342	+				+2.7
1,635,350	-		CCNA_01527	0.11	-0.2
1,635,350	-		CCNA_01527	0.11	-1.0
1,635,350	-		CCNA_01527	0.11	+0.2
1,635,350	-		CCNA_01527	0.11	-1.5
1,635,350	-		CCNA_01527	0.11	+0.7
1,635,386	+		CCNA_01527	0.15	+1.8
1,635,386	+		CCNA_01527	0.15	+1.9
1,635,430	-		CCNA_01527	0.21	-0.1
1,635,438	+		CCNA_01527	0.22	+1.2
1,635,440	+		CCNA_01527	0.22	+2.1
1,635,446	-		CCNA_01527	0.23	+0.4
1,635,448	-		CCNA_01527	0.23	-0.2
1,635,456	-		CCNA_01527	0.24	-0.3
1,635,457	+		CCNA_01527	0.24	+1.9
1,635,460	+		CCNA_01527	0.24	+1.8
1,635,499	+		CCNA_01527	0.29	+1.5
1,635,499	+		CCNA_01527	0.29	+2.1
1,635,499	+		CCNA_01527	0.29	+2.0
1,635,514	+		CCNA_01527	0.31	+0.9
1,635,541	-		CCNA_01527	0.34	-0.3
1,635,545	+		CCNA_01527	0.35	+1.9
1,635,567	+		CCNA_01527	0.37	+2.0
1,635,584	+		CCNA_01527	0.39	+1.3
1,635,593	+		CCNA_01527	0.40	+2.2
1,635,611	-		CCNA_01527	0.43	+0.5
1,635,626	+		CCNA_01527	0.44	+2.1
1,635,634	-		CCNA_01527	0.45	+0.9
1,635,660	+		CCNA_01527	0.49	+1.4
1,635,661	-		CCNA_01527	0.49	-0.3
1,635,661	-		CCNA_01527	0.49	-1.0
1,635,693	-		CCNA_01527	0.53	+0.7
1,635,733	-		CCNA_01527	0.57	+0.8
1,635,738	+		CCNA_01527	0.58	+2.2
1,635,738	+		CCNA_01527	0.58	+1.8
1,635,738	+		CCNA_01527	0.58	+2.2
1,635,738	+		CCNA_01527	0.58	+1.7
1,635,738	+		CCNA_01527	0.58	+1.4
1,635,738	+		CCNA_01527	0.58	+0.5
1,635,738	+		CCNA_01527	0.58	+2.0
1,635,746	-		CCNA_01527	0.59	-0.6
1,635,746	-		CCNA_01527	0.59	+1.2
1,635,746	-		CCNA_01527	0.59	-0.0
1,635,746	-		CCNA_01527	0.59	+0.7
1,635,747	-		CCNA_01527	0.59	-0.2
1,635,785	-		CCNA_01527	0.64	+0.2
1,635,806	-		CCNA_01527	0.66	+0.7
1,635,857	+		CCNA_01527	0.73	+2.4
1,635,897	+		CCNA_01527	0.77	+1.4
1,635,897	+		CCNA_01527	0.77	+1.7
1,635,898	-		CCNA_01527	0.77	+0.0
1,635,905	-		CCNA_01527	0.78	-0.6
1,635,905	-		CCNA_01527	0.78	-0.7
1,635,905	-		CCNA_01527	0.78	+1.8
1,635,916	+		CCNA_01527	0.80	+2.0
1,635,918	+		CCNA_01527	0.80	+2.6
1,635,918	+		CCNA_01527	0.80	+1.3
1,635,926	-		CCNA_01527	0.81	+0.3
1,635,926	-		CCNA_01527	0.81	-0.4
1,635,926	-		CCNA_01527	0.81	-1.2
1,635,936	-		CCNA_01527	0.82	+0.7
1,635,936	-		CCNA_01527	0.82	+1.7
1,635,958	+		CCNA_01527	0.85	+1.7
1,635,958	+		CCNA_01527	0.85	+2.1
1,635,986	+		CCNA_01527	0.88	+1.8
1,635,994	-		CCNA_01527	0.89	-0.2
1,636,000	+				+1.9
1,636,004	-				-0.8
1,636,013	+				+1.5
1,636,029	+				+1.6
1,636,070	+				+1.7
1,636,070	+				+2.0
1,636,076	-				+0.7
1,636,078	-				-1.7
1,636,078	-				+0.9
1,636,078	-				-0.6
1,636,078	-				+0.7
1,636,083	+				+1.3
1,636,085	-				-1.2
1,636,085	-				-1.4
1,636,093	-				-1.1
1,636,103	+				-1.4
1,636,103	+				-0.1
1,636,103	+				-0.6
1,636,111	-				+0.9
1,636,111	-				-3.4
1,636,111	-				+1.1
1,636,132	-				+0.6
1,636,169	+				+0.6
1,636,170	+				+0.4
1,636,207	+				-0.2
1,636,251	+				-1.0
1,636,259	-				-0.0
1,636,259	-				-0.6
1,636,259	-				+1.7
1,636,270	-				+1.0
1,636,270	-				-0.9
1,636,337	+				+1.6
1,636,341	+				+2.2
1,636,346	+				+2.3
1,636,362	+				+0.8
1,636,362	+				+1.1
1,636,454	+		CCNA_01528	0.12	+1.5
1,636,454	+		CCNA_01528	0.12	+1.0
1,636,454	+		CCNA_01528	0.12	+1.6
1,636,464	+		CCNA_01528	0.13	+1.4
1,636,464	+		CCNA_01528	0.13	+2.0
1,636,487	+		CCNA_01528	0.16	+2.2
1,636,495	-		CCNA_01528	0.17	-2.4
1,636,680	+		CCNA_01528	0.39	+2.1
1,636,680	+		CCNA_01528	0.39	+0.2
1,636,692	+		CCNA_01528	0.41	+1.4
1,636,704	+		CCNA_01528	0.42	+2.0
1,636,736	-		CCNA_01528	0.46	+0.1
1,636,762	-		CCNA_01528	0.49	-0.1
1,636,762	-		CCNA_01528	0.49	-1.0
1,636,769	-		CCNA_01528	0.50	-0.9
1,636,791	+		CCNA_01528	0.53	+2.1
1,636,791	+		CCNA_01528	0.53	+2.5
1,636,810	+		CCNA_01528	0.55	+2.4
1,636,833	+		CCNA_01528	0.58	+2.5
1,636,839	+		CCNA_01528	0.58	+1.7
1,636,841	-		CCNA_01528	0.59	-0.6
1,636,846	-		CCNA_01528	0.59	-0.9
1,636,871	+		CCNA_01528	0.62	+1.9
1,636,874	-		CCNA_01528	0.63	-0.6
1,636,878	+		CCNA_01528	0.63	+2.5
1,636,879	+		CCNA_01528	0.63	+2.9
1,636,943	-		CCNA_01528	0.71	-1.6
1,636,994	-		CCNA_01528	0.77	+1.1
1,636,998	+		CCNA_01528	0.78	+2.3
1,636,998	+		CCNA_01528	0.78	+2.4
1,636,998	+		CCNA_01528	0.78	+2.2
1,636,998	+		CCNA_01528	0.78	+2.9
1,636,998	+		CCNA_01528	0.78	+2.6
1,636,998	+		CCNA_01528	0.78	+2.3
1,637,006	-		CCNA_01528	0.79	+0.9
1,637,006	-		CCNA_01528	0.79	+0.0
1,637,019	+		CCNA_01528	0.80	+2.6
1,637,019	+		CCNA_01528	0.80	+2.6
1,637,019	+		CCNA_01528	0.80	+2.3
1,637,027	-		CCNA_01528	0.81	+1.7
1,637,027	-		CCNA_01528	0.81	-1.2
1,637,029	+		CCNA_01528	0.82	+1.9
1,637,040	+		CCNA_01528	0.83	+2.8
1,637,048	-		CCNA_01528	0.84	+0.6
1,637,052	-		CCNA_01528	0.84	-1.8