Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01051

Experiment: PYE with nitrite 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 2.5 mM
1,147,367	-		CCNA_01050	0.67	-1.4
1,147,414	-		CCNA_01050	0.69	-2.5
1,147,414	-		CCNA_01050	0.69	-0.5
1,147,414	-		CCNA_01050	0.69	+2.0
1,147,428	+		CCNA_01050	0.70	-1.6
1,147,439	+		CCNA_01050	0.71	+0.9
1,147,472	-		CCNA_01050	0.73	-0.8
1,147,472	-		CCNA_01050	0.73	-0.9
1,147,472	-		CCNA_01050	0.73	-0.7
1,147,497	-		CCNA_01050	0.75	-1.3
1,147,542	-		CCNA_01050	0.77	-0.8
1,147,596	+		CCNA_01050	0.81	+0.4
1,147,596	+		CCNA_01050	0.81	-0.3
1,147,596	+		CCNA_01050	0.81	+0.6
1,147,604	-		CCNA_01050	0.81	+0.0
1,147,627	-		CCNA_01050	0.83	-0.7
1,147,635	+		CCNA_01050	0.83	+0.8
1,147,647	+		CCNA_01050	0.84	+2.2
1,147,675	+		CCNA_01050	0.85	+1.9
1,147,710	+		CCNA_01050	0.88	+0.4
1,147,716	+		CCNA_01050	0.88	+1.2
1,147,766	+				+1.5
1,147,805	-				-1.6
1,147,807	+				+0.8
1,147,894	-				-2.9
1,147,906	+				-2.7
1,147,916	+				-1.6
1,147,916	-				-0.9
1,147,924	-				-2.0
1,147,924	-				-1.2
1,147,933	-				-0.1
1,147,958	-				-2.4
1,147,966	-				+0.5
1,148,003	+				-1.8
1,148,012	-				-0.5
1,148,088	+				+0.0
1,148,298	+				-0.3
1,148,388	+				-0.6
1,148,543	+				-2.5
1,148,642	+				-0.8
1,148,649	+				+0.1
1,148,663	+				-1.2
1,148,663	+				-0.1
1,148,671	-		CCNA_01051	0.10	+0.9
1,148,681	+		CCNA_01051	0.10	-1.0
1,148,691	-		CCNA_01051	0.11	-0.9
1,148,697	+		CCNA_01051	0.11	-0.9
1,148,833	+		CCNA_01051	0.15	-1.1
1,148,833	+		CCNA_01051	0.15	-1.0
1,148,833	+		CCNA_01051	0.15	-1.4
1,148,841	-		CCNA_01051	0.16	-2.0
1,148,841	-		CCNA_01051	0.16	-1.8
1,148,855	+		CCNA_01051	0.16	-2.1
1,148,876	-		CCNA_01051	0.17	-0.9
1,148,887	-		CCNA_01051	0.17	+2.4
1,148,895	-		CCNA_01051	0.17	-1.0
1,148,952	+		CCNA_01051	0.19	-1.3
1,148,952	+		CCNA_01051	0.19	-2.3
1,148,952	+		CCNA_01051	0.19	-0.3
1,148,952	+		CCNA_01051	0.19	-0.3
1,148,957	+		CCNA_01051	0.19	-0.3
1,148,959	-		CCNA_01051	0.19	+0.2
1,148,960	-		CCNA_01051	0.19	-0.9
1,149,022	+		CCNA_01051	0.21	-0.7
1,149,028	-		CCNA_01051	0.22	+0.2
1,149,038	-		CCNA_01051	0.22	-0.1
1,149,041	+		CCNA_01051	0.22	-1.4
1,149,064	+		CCNA_01051	0.23	-0.1
1,149,082	-		CCNA_01051	0.23	-0.1
1,149,082	-		CCNA_01051	0.23	-0.8
1,149,125	+		CCNA_01051	0.25	-1.1
1,149,135	+		CCNA_01051	0.25	-0.8
1,149,145	+		CCNA_01051	0.25	-1.3
1,149,185	+		CCNA_01051	0.27	-0.6
1,149,203	-		CCNA_01051	0.27	+0.9
1,149,203	-		CCNA_01051	0.27	+1.7
1,149,203	-		CCNA_01051	0.27	+1.1
1,149,253	-		CCNA_01051	0.29	-1.9
1,149,285	-		CCNA_01051	0.30	-1.1
1,149,285	-		CCNA_01051	0.30	-0.3
1,149,294	+		CCNA_01051	0.30	-1.8
1,149,309	-		CCNA_01051	0.31	+0.6
1,149,347	+		CCNA_01051	0.32	-0.7
1,149,466	+		CCNA_01051	0.36	-0.4
1,149,482	+		CCNA_01051	0.36	-0.3
1,149,489	-		CCNA_01051	0.36	-0.7
1,149,510	-		CCNA_01051	0.37	-0.7
1,149,520	-		CCNA_01051	0.37	-0.1
1,149,530	-		CCNA_01051	0.38	-0.3
1,149,548	+		CCNA_01051	0.38	-0.4
1,149,557	+		CCNA_01051	0.39	-1.6
1,149,647	+		CCNA_01051	0.42	-0.7
1,149,766	-		CCNA_01051	0.45	+0.9
1,149,791	+		CCNA_01051	0.46	+0.0
1,149,799	-		CCNA_01051	0.46	-0.5
1,149,804	-		CCNA_01051	0.47	-1.8
1,149,810	-		CCNA_01051	0.47	-1.4
1,149,815	-		CCNA_01051	0.47	-0.6
1,149,823	+		CCNA_01051	0.47	-1.2
1,149,835	-		CCNA_01051	0.48	-1.8
1,149,895	-		CCNA_01051	0.49	+2.0
1,149,903	+		CCNA_01051	0.50	-1.0
1,149,911	-		CCNA_01051	0.50	+0.0
1,149,949	-		CCNA_01051	0.51	-2.2
1,149,960	+		CCNA_01051	0.52	-1.3
1,149,960	+		CCNA_01051	0.52	-2.8
1,149,968	-		CCNA_01051	0.52	-2.1
1,149,968	-		CCNA_01051	0.52	-0.5
1,149,968	-		CCNA_01051	0.52	-1.8
1,149,977	+		CCNA_01051	0.52	-0.7
1,149,977	-		CCNA_01051	0.52	+1.7
1,149,983	-		CCNA_01051	0.52	-0.7
1,149,985	-		CCNA_01051	0.52	-0.0
1,149,995	+		CCNA_01051	0.53	-0.2
1,150,000	+		CCNA_01051	0.53	-0.6
1,150,000	+		CCNA_01051	0.53	-0.1
1,150,008	-		CCNA_01051	0.53	-0.4
1,150,008	-		CCNA_01051	0.53	+0.2
1,150,086	+		CCNA_01051	0.56	-0.4
1,150,091	+		CCNA_01051	0.56	-2.4
1,150,096	+		CCNA_01051	0.56	-1.0
1,150,104	-		CCNA_01051	0.56	+0.4
1,150,114	+		CCNA_01051	0.57	-0.3
1,150,117	-		CCNA_01051	0.57	-0.9
1,150,122	-		CCNA_01051	0.57	+0.4
1,150,157	+		CCNA_01051	0.58	-0.3
1,150,165	-		CCNA_01051	0.58	-1.1
1,150,172	+		CCNA_01051	0.58	+0.9
1,150,196	+		CCNA_01051	0.59	+0.2
1,150,202	-		CCNA_01051	0.59	-0.4
1,150,213	-		CCNA_01051	0.60	-0.5
1,150,220	-		CCNA_01051	0.60	-0.7
1,150,251	-		CCNA_01051	0.61	-1.1
1,150,286	-		CCNA_01051	0.62	-0.9
1,150,312	+		CCNA_01051	0.63	-1.0
1,150,312	+		CCNA_01051	0.63	-0.6
1,150,312	+		CCNA_01051	0.63	-1.8
1,150,320	-		CCNA_01051	0.63	+0.6
1,150,320	-		CCNA_01051	0.63	-1.3
1,150,332	+		CCNA_01051	0.64	-1.1
1,150,348	-		CCNA_01051	0.64	-2.9
1,150,356	+		CCNA_01051	0.64	-0.8
1,150,403	+		CCNA_01051	0.66	-1.4
1,150,416	+		CCNA_01051	0.66	-0.0
1,150,416	+		CCNA_01051	0.66	-0.5
1,150,424	-		CCNA_01051	0.67	-1.3
1,150,596	+		CCNA_01051	0.72	-0.1
1,150,759	+		CCNA_01051	0.77	-0.5
1,150,766	-		CCNA_01051	0.78	+0.4
1,150,767	-		CCNA_01051	0.78	-1.3
1,150,785	+		CCNA_01051	0.78	-1.0
1,150,785	+		CCNA_01051	0.78	-0.4
1,150,788	-		CCNA_01051	0.78	-0.8
1,150,788	-		CCNA_01051	0.78	-0.2
1,150,793	-		CCNA_01051	0.78	-2.6
1,150,793	-		CCNA_01051	0.78	-1.5
1,150,800	+		CCNA_01051	0.79	-0.2
1,150,808	-		CCNA_01051	0.79	-1.3
1,150,818	-		CCNA_01051	0.79	-0.1
1,150,864	-		CCNA_01051	0.81	-0.3
1,150,867	+		CCNA_01051	0.81	-0.7
1,150,867	+		CCNA_01051	0.81	-0.7
1,150,867	+		CCNA_01051	0.81	+0.0
1,150,867	+		CCNA_01051	0.81	-1.8
1,150,867	+		CCNA_01051	0.81	+0.8
1,150,869	-		CCNA_01051	0.81	+0.4
1,150,875	-		CCNA_01051	0.81	-0.8
1,150,875	-		CCNA_01051	0.81	-0.8
1,150,875	-		CCNA_01051	0.81	-0.1
1,150,875	-		CCNA_01051	0.81	-1.7
1,150,881	-		CCNA_01051	0.81	-1.6
1,150,924	-		CCNA_01051	0.83	-0.7
1,150,966	-		CCNA_01051	0.84	-0.7
1,151,079	+		CCNA_01051	0.88	+0.3
1,151,110	-		CCNA_01051	0.89	-1.0
1,151,127	+		CCNA_01051	0.89	-1.0
1,151,149	-		CCNA_01051	0.90	-1.9
1,151,159	+				+0.0
1,151,159	+				-0.3
1,151,182	-				-0.8
1,151,183	-				+0.2
1,151,191	+				+1.2
1,151,199	-				-1.2
1,151,221	-				-2.4
1,151,272	+				-0.8
1,151,272	+				-0.0
1,151,272	+				-1.7
1,151,272	+				-0.0
1,151,272	+				+0.0
1,151,272	+				+0.1
1,151,280	-				-0.9
1,151,280	-				-0.6
1,151,280	-				+0.2
1,151,280	-				-0.3
1,151,280	-				-1.1
1,151,280	-				-2.6
1,151,280	-				+0.6
1,151,285	-				-0.2
1,151,352	+				-0.0
1,151,352	+				+1.2
1,151,352	+				+1.1
1,151,360	-				-1.8
1,151,375	-				-1.4
1,151,375	-				+0.9
1,151,377	+				-0.5
1,151,420	+				-0.1
1,151,420	+				-1.1
1,151,548	-				-0.4
1,151,559	-				-0.7
1,151,559	-				+0.4
1,151,638	+		CCNA_01052	0.12	+0.6
1,151,638	+		CCNA_01052	0.12	-1.3
1,151,646	-		CCNA_01052	0.13	+0.2
1,151,700	-		CCNA_01052	0.20	+0.0
1,151,849	-		CCNA_01052	0.41	-0.4
1,151,921	-		CCNA_01052	0.51	-0.6
1,151,926	+		CCNA_01052	0.51	+0.4
1,151,926	+		CCNA_01052	0.51	-0.7
1,151,975	+		CCNA_01052	0.58	+1.2
1,151,975	+		CCNA_01052	0.58	-1.8
1,152,001	+		CCNA_01052	0.62	+0.9
1,152,003	-		CCNA_01052	0.62	-0.1
1,152,009	-		CCNA_01052	0.63	-0.6
1,152,040	-		CCNA_01052	0.67	-1.6
1,152,042	+		CCNA_01052	0.67	-1.0
1,152,042	+		CCNA_01052	0.67	-1.2
1,152,051	+		CCNA_01052	0.69	+0.3
1,152,068	-		CCNA_01052	0.71	+0.9
1,152,075	-		CCNA_01052	0.72	-1.0
1,152,095	+		CCNA_01052	0.75	-2.0
1,152,112	+		CCNA_01052	0.77	-0.4
1,152,185	-		CCNA_01052	0.87	-0.9
1,152,185	-		CCNA_01052	0.87	+0.7
1,152,219	+				+0.1
1,152,240	-				+0.2
1,152,265	+				+1.3
1,152,273	-				-1.1
1,152,335	+		CCNA_01053	0.12	-0.4
1,152,361	+		CCNA_01053	0.14	+0.2
1,152,361	+		CCNA_01053	0.14	+0.5
1,152,371	+		CCNA_01053	0.15	+1.5
1,152,371	+		CCNA_01053	0.15	+0.3
1,152,371	+		CCNA_01053	0.15	-2.9
1,152,391	-		CCNA_01053	0.17	+1.3
1,152,392	-		CCNA_01053	0.17	+1.6
1,152,419	-		CCNA_01053	0.20	+0.4
1,152,422	+		CCNA_01053	0.20	-0.1
1,152,430	-		CCNA_01053	0.21	+0.4