Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00980

Experiment: PYE with nitrite 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 2.5 mM
1,058,427	+		CCNA_00979	0.10	-2.1
1,058,465	-		CCNA_00979	0.14	-0.4
1,058,510	+		CCNA_00979	0.18	-2.2
1,058,518	-		CCNA_00979	0.19	+0.7
1,058,594	-		CCNA_00979	0.26	-0.9
1,058,594	-		CCNA_00979	0.26	+0.4
1,058,651	+		CCNA_00979	0.31	-1.5
1,058,679	+		CCNA_00979	0.34	+0.1
1,058,679	+		CCNA_00979	0.34	-0.8
1,058,679	+		CCNA_00979	0.34	+0.1
1,058,703	-		CCNA_00979	0.36	-1.1
1,058,715	+		CCNA_00979	0.37	-0.9
1,058,740	+		CCNA_00979	0.40	-0.3
1,058,740	+		CCNA_00979	0.40	-0.7
1,058,740	+		CCNA_00979	0.40	+0.5
1,058,740	+		CCNA_00979	0.40	+1.1
1,058,740	+				+1.6
1,058,740	+		CCNA_00979	0.40	+0.8
1,058,740	+		CCNA_00979	0.40	-0.7
1,058,748	-		CCNA_00979	0.40	+1.4
1,058,748	-		CCNA_00979	0.40	-1.2
1,058,748	-		CCNA_00979	0.40	-0.7
1,058,748	-		CCNA_00979	0.40	+0.8
1,058,752	+		CCNA_00979	0.41	-0.9
1,058,752	+		CCNA_00979	0.41	-0.7
1,058,752	+		CCNA_00979	0.41	-1.9
1,058,757	+		CCNA_00979	0.41	+0.2
1,058,760	-		CCNA_00979	0.41	-1.2
1,058,760	-		CCNA_00979	0.41	-2.9
1,058,760	-		CCNA_00979	0.41	-1.5
1,058,760	-		CCNA_00979	0.41	-1.7
1,058,760	-		CCNA_00979	0.41	-0.4
1,058,760	-		CCNA_00979	0.41	-0.8
1,058,762	+		CCNA_00979	0.42	-0.8
1,058,765	-		CCNA_00979	0.42	+0.4
1,058,803	-		CCNA_00979	0.45	+0.5
1,058,845	+		CCNA_00979	0.49	-1.6
1,058,845	+				+2.2
1,058,848	-		CCNA_00979	0.50	+1.6
1,058,864	+		CCNA_00979	0.51	-0.7
1,058,872	-		CCNA_00979	0.52	+0.9
1,058,898	+		CCNA_00979	0.54	-1.7
1,058,907	+		CCNA_00979	0.55	+0.1
1,058,923	+		CCNA_00979	0.57	-1.5
1,058,923	+		CCNA_00979	0.57	-0.6
1,058,929	-		CCNA_00979	0.57	-0.1
1,058,931	-		CCNA_00979	0.57	-0.0
1,058,936	-		CCNA_00979	0.58	-1.5
1,058,947	-		CCNA_00979	0.59	-1.0
1,058,949	+		CCNA_00979	0.59	-0.2
1,058,949	+		CCNA_00979	0.59	-0.0
1,058,949	+		CCNA_00979	0.59	-1.6
1,058,949	+		CCNA_00979	0.59	-1.3
1,058,952	-		CCNA_00979	0.59	+0.1
1,058,957	-		CCNA_00979	0.60	+0.7
1,058,957	-		CCNA_00979	0.60	-1.2
1,058,957	-		CCNA_00979	0.60	+0.1
1,058,957	-		CCNA_00979	0.60	+0.5
1,059,035	+		CCNA_00979	0.67	-0.3
1,059,067	-		CCNA_00979	0.70	-0.9
1,059,076	+		CCNA_00979	0.71	-2.4
1,059,097	+		CCNA_00979	0.73	+0.7
1,059,205	+		CCNA_00979	0.83	-1.9
1,059,264	+		CCNA_00979	0.88	+0.6
1,059,265	-		CCNA_00979	0.88	-1.5
1,059,286	-				-1.4
1,059,323	+				-0.9
1,059,357	+				-0.8
1,059,357	+				-0.7
1,059,357	+				-2.0
1,059,365	-				-0.7
1,059,365	-				+0.2
1,059,410	-				+0.3
1,059,426	-				-0.9
1,059,430	+				-0.8
1,059,471	+				-1.0
1,059,479	-				-0.2
1,059,485	+				-1.1
1,059,501	-				-1.4
1,059,506	-				+0.4
1,059,515	+				+0.6
1,059,534	+		CCNA_00980	0.12	-1.2
1,059,544	-		CCNA_00980	0.12	-1.3
1,059,642	+		CCNA_00980	0.20	+1.1
1,059,645	-		CCNA_00980	0.21	+0.9
1,059,646	-		CCNA_00980	0.21	-0.7
1,059,710	-		CCNA_00980	0.26	-0.7
1,059,759	-		CCNA_00980	0.30	+0.5
1,059,857	-		CCNA_00980	0.38	-1.6
1,059,872	+		CCNA_00980	0.40	-0.9
1,059,874	+		CCNA_00980	0.40	-0.0
1,059,874	+		CCNA_00980	0.40	-0.9
1,059,899	+		CCNA_00980	0.42	-1.2
1,059,900	+		CCNA_00980	0.42	-0.2
1,059,912	-		CCNA_00980	0.43	-1.4
1,059,925	-		CCNA_00980	0.44	-1.0
1,059,926	+		CCNA_00980	0.44	+0.7
1,059,931	+		CCNA_00980	0.44	-0.2
1,059,934	-		CCNA_00980	0.45	-0.9
1,059,939	-		CCNA_00980	0.45	-0.2
1,059,939	-				+0.4
1,059,948	+		CCNA_00980	0.46	+0.0
1,059,974	+		CCNA_00980	0.48	+0.6
1,059,989	+		CCNA_00980	0.49	-0.6
1,059,999	+		CCNA_00980	0.50	-2.4
1,060,007	-		CCNA_00980	0.51	+0.8
1,060,043	-		CCNA_00980	0.54	-1.3
1,060,043	-		CCNA_00980	0.54	-1.6
1,060,057	+		CCNA_00980	0.55	-2.5
1,060,057	+		CCNA_00980	0.55	-1.6
1,060,057	+		CCNA_00980	0.55	-0.0
1,060,057	+		CCNA_00980	0.55	-1.9
1,060,057	+		CCNA_00980	0.55	-1.4
1,060,065	-		CCNA_00980	0.56	+0.6
1,060,065	-		CCNA_00980	0.56	-0.4
1,060,079	-		CCNA_00980	0.57	+1.5
1,060,150	-		CCNA_00980	0.63	+0.2
1,060,176	-		CCNA_00980	0.65	-1.7
1,060,191	+		CCNA_00980	0.66	-1.6
1,060,199	-		CCNA_00980	0.67	+1.0
1,060,200	+		CCNA_00980	0.67	+0.3
1,060,205	+		CCNA_00980	0.67	+0.6
1,060,205	+		CCNA_00980	0.67	-0.4
1,060,213	-		CCNA_00980	0.68	-1.6
1,060,213	-		CCNA_00980	0.68	-0.7
1,060,223	+		CCNA_00980	0.69	+0.6
1,060,264	-		CCNA_00980	0.72	-0.2
1,060,277	-		CCNA_00980	0.73	-0.5
1,060,277	-		CCNA_00980	0.73	-0.6
1,060,277	-		CCNA_00980	0.73	-1.5
1,060,277	-		CCNA_00980	0.73	+0.6
1,060,277	-		CCNA_00980	0.73	-3.1
1,060,277	-		CCNA_00980	0.73	-1.0
1,060,277	-		CCNA_00980	0.73	-0.0
1,060,279	-		CCNA_00980	0.73	+0.1
1,060,279	-		CCNA_00980	0.73	-0.5
1,060,292	-		CCNA_00980	0.74	-2.3
1,060,303	+		CCNA_00980	0.75	-2.1
1,060,303	+		CCNA_00980	0.75	-1.4
1,060,303	+		CCNA_00980	0.75	-1.9
1,060,303	+		CCNA_00980	0.75	-1.2
1,060,307	-		CCNA_00980	0.76	+2.2
1,060,311	-		CCNA_00980	0.76	-2.0
1,060,320	+		CCNA_00980	0.77	-2.2
1,060,370	+		CCNA_00980	0.81	-2.1
1,060,378	-		CCNA_00980	0.82	-1.1
1,060,384	+		CCNA_00980	0.82	-1.0
1,060,392	-		CCNA_00980	0.83	-0.5
1,060,392	-		CCNA_00980	0.83	+0.4
1,060,421	-		CCNA_00980	0.85	-0.9
1,060,426	+		CCNA_00980	0.85	+1.2
1,060,474	-		CCNA_00980	0.89	-0.4
1,060,502	-				+0.1
1,060,506	+				+0.1
1,060,520	+				-0.1
1,060,523	-				-0.4
1,060,523	-				+0.2
1,060,525	+				-1.7
1,060,539	+				-0.5
1,060,547	-				-1.7
1,060,547	-				+0.9
1,060,562	+				-1.0
1,060,599	+				+0.0
1,060,689	+		CCNA_00981	0.13	+0.4
1,060,689	+		CCNA_00981	0.13	-0.7
1,060,689	+		CCNA_00981	0.13	+0.5
1,060,697	-		CCNA_00981	0.14	-2.4
1,060,760	+		CCNA_00981	0.23	-1.1
1,060,804	-		CCNA_00981	0.29	-0.1
1,060,810	+		CCNA_00981	0.30	+0.3
1,060,825	+		CCNA_00981	0.32	+0.6
1,060,842	+		CCNA_00981	0.35	+0.6
1,060,850	-		CCNA_00981	0.36	-1.1
1,060,885	+		CCNA_00981	0.41	-1.8
1,060,991	+		CCNA_00981	0.56	+1.1
1,061,031	+		CCNA_00981	0.62	-0.9
1,061,031	+		CCNA_00981	0.62	+0.1
1,061,031	+		CCNA_00981	0.62	+0.1
1,061,039	-		CCNA_00981	0.63	+0.9
1,061,039	-		CCNA_00981	0.63	+0.9
1,061,039	-		CCNA_00981	0.63	-2.2
1,061,039	-		CCNA_00981	0.63	+0.8
1,061,042	+		CCNA_00981	0.63	-0.5
1,061,042	+		CCNA_00981	0.63	-0.1
1,061,050	-		CCNA_00981	0.64	+0.1
1,061,079	-		CCNA_00981	0.68	-1.6
1,061,079	-		CCNA_00981	0.68	+0.2
1,061,089	+		CCNA_00981	0.70	-0.9
1,061,092	-		CCNA_00981	0.70	-1.7
1,061,097	-		CCNA_00981	0.71	-2.1
1,061,102	-		CCNA_00981	0.72	-1.1
1,061,189	-		CCNA_00981	0.84	-1.8
1,061,191	+		CCNA_00981	0.84	+0.2
1,061,214	-		CCNA_00981	0.88	-1.6
1,061,214	-		CCNA_00981	0.88	-3.0
1,061,237	-				+0.1
1,061,267	+				-2.2
1,061,314	-				+0.1
1,061,331	-				+1.7
1,061,341	+				-2.2
1,061,433	-				-1.0
1,061,434	+				-1.3
1,061,571	+				+0.7