Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00883

Experiment: PYE with nitrite 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00882 and CCNA_00883 are separated by 191 nucleotidesCCNA_00883 and CCNA_00884 are separated by 2 nucleotidesCCNA_00884 and CCNA_00885 overlap by 11 nucleotides CCNA_00882: CCNA_00882 - hypothetical protein, at 961,855 to 962,853 _00882 CCNA_00883: CCNA_00883 - 3-demethylubiquinone 3-methyltransferase, at 963,045 to 963,803 _00883 CCNA_00884: CCNA_00884 - VapC-like PIN domain ribonuclease toxin, at 963,806 to 964,192 _00884 CCNA_00885: CCNA_00885 - MazE-like antitoxin protein, at 964,182 to 964,730 _00885 Position (kb) 963 964Strain fitness (log2 ratio) -2 -1 0 1 2at 962.048 kb on + strand, within CCNA_00882at 962.054 kb on - strand, within CCNA_00882at 962.089 kb on - strand, within CCNA_00882at 962.094 kb on - strand, within CCNA_00882at 962.095 kb on + strand, within CCNA_00882at 962.095 kb on + strand, within CCNA_00882at 962.101 kb on - strand, within CCNA_00882at 962.103 kb on - strand, within CCNA_00882at 962.110 kb on - strand, within CCNA_00882at 962.153 kb on + strand, within CCNA_00882at 962.153 kb on + strand, within CCNA_00882at 962.161 kb on - strand, within CCNA_00882at 962.251 kb on + strand, within CCNA_00882at 962.296 kb on + strand, within CCNA_00882at 962.296 kb on + strand, within CCNA_00882at 962.296 kb on + strand, within CCNA_00882at 962.296 kb on + strand, within CCNA_00882at 962.306 kb on - strand, within CCNA_00882at 962.323 kb on + strand, within CCNA_00882at 962.323 kb on + strand, within CCNA_00882at 962.331 kb on - strand, within CCNA_00882at 962.331 kb on - strand, within CCNA_00882at 962.331 kb on - strand, within CCNA_00882at 962.331 kb on - strand, within CCNA_00882at 962.344 kb on + strand, within CCNA_00882at 962.344 kb on + strand, within CCNA_00882at 962.363 kb on + strand, within CCNA_00882at 962.375 kb on + strand, within CCNA_00882at 962.376 kb on + strand, within CCNA_00882at 962.376 kb on + strand, within CCNA_00882at 962.428 kb on - strand, within CCNA_00882at 962.445 kb on + strand, within CCNA_00882at 962.463 kb on - strand, within CCNA_00882at 962.468 kb on + strand, within CCNA_00882at 962.481 kb on + strand, within CCNA_00882at 962.481 kb on + strand, within CCNA_00882at 962.489 kb on - strand, within CCNA_00882at 962.489 kb on - strand, within CCNA_00882at 962.509 kb on - strand, within CCNA_00882at 962.522 kb on - strand, within CCNA_00882at 962.553 kb on - strand, within CCNA_00882at 962.553 kb on - strand, within CCNA_00882at 962.560 kb on + strand, within CCNA_00882at 962.576 kb on + strand, within CCNA_00882at 962.644 kb on + strand, within CCNA_00882at 962.665 kb on + strand, within CCNA_00882at 962.680 kb on + strand, within CCNA_00882at 962.688 kb on - strand, within CCNA_00882at 962.733 kb on + strand, within CCNA_00882at 962.742 kb on - strand, within CCNA_00882at 962.751 kb on + strand, within CCNA_00882at 962.759 kb on - strandat 962.759 kb on - strandat 962.759 kb on - strandat 962.779 kb on - strandat 962.779 kb on - strandat 962.781 kb on + strandat 962.789 kb on - strandat 962.796 kb on - strandat 962.804 kb on + strandat 962.809 kb on + strandat 962.809 kb on + strandat 962.809 kb on + strandat 962.809 kb on + strandat 962.809 kb on + strandat 962.817 kb on - strandat 962.817 kb on - strandat 962.819 kb on + strandat 962.822 kb on - strandat 962.850 kb on + strandat 962.850 kb on + strandat 962.858 kb on - strandat 962.863 kb on - strandat 962.865 kb on + strandat 962.873 kb on - strandat 962.947 kb on + strandat 962.949 kb on - strandat 962.957 kb on + strandat 962.965 kb on - strandat 962.965 kb on - strandat 962.965 kb on - strandat 962.965 kb on - strandat 962.965 kb on - strandat 962.965 kb on - strandat 962.977 kb on - strandat 962.989 kb on - strandat 962.991 kb on + strandat 962.999 kb on - strandat 963.041 kb on - strandat 963.041 kb on - strandat 963.046 kb on - strandat 963.051 kb on - strandat 963.051 kb on - strandat 963.051 kb on - strandat 963.760 kb on + strandat 963.769 kb on + strandat 963.799 kb on + strandat 963.807 kb on - strandat 963.831 kb on + strandat 963.834 kb on - strandat 963.836 kb on + strandat 963.836 kb on + strandat 963.844 kb on - strandat 963.844 kb on - strandat 963.844 kb on - strandat 963.844 kb on - strandat 963.863 kb on + strand, within CCNA_00884at 963.904 kb on - strand, within CCNA_00884at 963.925 kb on + strand, within CCNA_00884at 963.942 kb on + strand, within CCNA_00884at 963.950 kb on - strand, within CCNA_00884at 963.950 kb on - strand, within CCNA_00884at 963.950 kb on - strand, within CCNA_00884at 963.973 kb on + strand, within CCNA_00884at 964.042 kb on + strand, within CCNA_00884at 964.076 kb on - strand, within CCNA_00884at 964.091 kb on + strand, within CCNA_00884at 964.099 kb on - strand, within CCNA_00884at 964.201 kb on - strandat 964.207 kb on - strandat 964.220 kb on - strandat 964.220 kb on - strandat 964.220 kb on - strandat 964.227 kb on + strandat 964.234 kb on + strandat 964.306 kb on - strand, within CCNA_00885at 964.327 kb on + strand, within CCNA_00885at 964.329 kb on - strand, within CCNA_00885at 964.354 kb on + strand, within CCNA_00885at 964.359 kb on + strand, within CCNA_00885at 964.359 kb on + strand, within CCNA_00885at 964.359 kb on + strand, within CCNA_00885at 964.378 kb on + strand, within CCNA_00885at 964.379 kb on - strand, within CCNA_00885at 964.395 kb on + strand, within CCNA_00885at 964.398 kb on - strand, within CCNA_00885at 964.403 kb on - strand, within CCNA_00885at 964.416 kb on + strand, within CCNA_00885at 964.423 kb on + strand, within CCNA_00885at 964.425 kb on - strand, within CCNA_00885at 964.431 kb on - strand, within CCNA_00885at 964.431 kb on - strand, within CCNA_00885at 964.431 kb on - strand, within CCNA_00885at 964.440 kb on + strand, within CCNA_00885at 964.440 kb on + strand, within CCNA_00885at 964.440 kb on + strand, within CCNA_00885at 964.443 kb on - strand, within CCNA_00885at 964.448 kb on - strand, within CCNA_00885at 964.461 kb on + strand, within CCNA_00885at 964.475 kb on + strand, within CCNA_00885at 964.475 kb on + strand, within CCNA_00885at 964.483 kb on - strand, within CCNA_00885at 964.485 kb on - strand, within CCNA_00885at 964.525 kb on + strand, within CCNA_00885at 964.531 kb on + strand, within CCNA_00885at 964.533 kb on - strand, within CCNA_00885at 964.554 kb on - strand, within CCNA_00885at 964.554 kb on - strand, within CCNA_00885at 964.561 kb on - strand, within CCNA_00885at 964.577 kb on + strand, within CCNA_00885at 964.577 kb on + strand, within CCNA_00885at 964.577 kb on + strand, within CCNA_00885at 964.585 kb on - strand, within CCNA_00885at 964.595 kb on - strand, within CCNA_00885at 964.605 kb on - strand, within CCNA_00885at 964.669 kb on - strand, within CCNA_00885at 964.708 kb on - strandat 964.794 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 2.5 mM
remove
962,048 + CCNA_00882 0.19 -0.9
962,054 - CCNA_00882 0.20 -0.4
962,089 - CCNA_00882 0.23 -0.4
962,094 - CCNA_00882 0.24 +0.2
962,095 + CCNA_00882 0.24 -1.3
962,095 + CCNA_00882 0.24 -0.1
962,101 - CCNA_00882 0.25 +0.6
962,103 - CCNA_00882 0.25 -1.1
962,110 - CCNA_00882 0.26 -1.6
962,153 + CCNA_00882 0.30 +0.8
962,153 + CCNA_00882 0.30 -0.3
962,161 - CCNA_00882 0.31 -0.6
962,251 + CCNA_00882 0.40 +0.5
962,296 + CCNA_00882 0.44 -0.9
962,296 + CCNA_00882 0.44 -1.2
962,296 + CCNA_00882 0.44 +0.6
962,296 + CCNA_00882 0.44 -0.7
962,306 - CCNA_00882 0.45 -1.7
962,323 + CCNA_00882 0.47 +0.3
962,323 + CCNA_00882 0.47 -0.8
962,331 - CCNA_00882 0.48 +0.4
962,331 - CCNA_00882 0.48 -0.9
962,331 - CCNA_00882 0.48 -0.9
962,331 - CCNA_00882 0.48 -1.3
962,344 + CCNA_00882 0.49 +0.1
962,344 + CCNA_00882 0.49 +0.3
962,363 + CCNA_00882 0.51 -0.9
962,375 + CCNA_00882 0.52 -0.7
962,376 + CCNA_00882 0.52 -0.7
962,376 + CCNA_00882 0.52 +0.6
962,428 - CCNA_00882 0.57 -0.1
962,445 + CCNA_00882 0.59 +0.7
962,463 - CCNA_00882 0.61 +0.1
962,468 + CCNA_00882 0.61 -0.6
962,481 + CCNA_00882 0.63 -1.4
962,481 + CCNA_00882 0.63 -1.5
962,489 - CCNA_00882 0.63 +0.7
962,489 - CCNA_00882 0.63 -0.5
962,509 - CCNA_00882 0.65 -0.2
962,522 - CCNA_00882 0.67 -1.5
962,553 - CCNA_00882 0.70 -1.9
962,553 - CCNA_00882 0.70 +1.7
962,560 + CCNA_00882 0.71 -0.3
962,576 + CCNA_00882 0.72 +1.4
962,644 + CCNA_00882 0.79 -0.4
962,665 + CCNA_00882 0.81 +0.6
962,680 + CCNA_00882 0.83 -0.2
962,688 - CCNA_00882 0.83 +0.8
962,733 + CCNA_00882 0.88 -1.2
962,742 - CCNA_00882 0.89 +0.9
962,751 + CCNA_00882 0.90 -0.7
962,759 - -1.7
962,759 - -0.9
962,759 - -0.4
962,779 - -1.2
962,779 - +0.1
962,781 + -1.3
962,789 - +1.7
962,796 - -0.7
962,804 + -1.3
962,809 + -1.9
962,809 + -1.1
962,809 + -0.1
962,809 + -0.3
962,809 + -0.9
962,817 - -0.1
962,817 - +0.7
962,819 + -0.4
962,822 - +1.3
962,850 + +0.8
962,850 + -0.0
962,858 - -1.1
962,863 - -1.4
962,865 + -1.7
962,873 - -1.2
962,947 + -1.1
962,949 - -1.4
962,957 + +0.5
962,965 - -0.3
962,965 - -1.0
962,965 - -1.2
962,965 - +1.0
962,965 - -0.1
962,965 - +1.1
962,977 - -1.3
962,989 - +0.0
962,991 + +0.9
962,999 - +0.6
963,041 - +0.7
963,041 - +0.7
963,046 - +1.5
963,051 - +0.1
963,051 - +0.9
963,051 - +0.8
963,760 + +1.0
963,769 + +0.0
963,799 + +2.1
963,807 - -1.1
963,831 + +1.4
963,834 - +0.9
963,836 + +2.3
963,836 + -0.3
963,844 - -0.7
963,844 - -1.0
963,844 - -0.6
963,844 - +0.8
963,863 + CCNA_00884 0.15 -1.4
963,904 - CCNA_00884 0.25 -1.1
963,925 + CCNA_00884 0.31 +0.6
963,942 + CCNA_00884 0.35 -1.4
963,950 - CCNA_00884 0.37 -1.6
963,950 - CCNA_00884 0.37 -0.8
963,950 - CCNA_00884 0.37 -1.0
963,973 + CCNA_00884 0.43 -2.3
964,042 + CCNA_00884 0.61 -0.2
964,076 - CCNA_00884 0.70 -0.4
964,091 + CCNA_00884 0.74 -0.9
964,099 - CCNA_00884 0.76 -0.8
964,201 - +1.2
964,207 - +1.4
964,220 - +1.4
964,220 - +1.5
964,220 - +1.4
964,227 + -2.3
964,234 + -1.4
964,306 - CCNA_00885 0.23 +1.2
964,327 + CCNA_00885 0.26 -0.4
964,329 - CCNA_00885 0.27 +1.3
964,354 + CCNA_00885 0.31 +0.2
964,359 + CCNA_00885 0.32 -0.1
964,359 + CCNA_00885 0.32 +0.3
964,359 + CCNA_00885 0.32 -1.7
964,378 + CCNA_00885 0.36 -2.6
964,379 - CCNA_00885 0.36 +1.2
964,395 + CCNA_00885 0.39 -1.8
964,398 - CCNA_00885 0.39 +1.3
964,403 - CCNA_00885 0.40 +1.5
964,416 + CCNA_00885 0.43 -0.7
964,423 + CCNA_00885 0.44 -0.1
964,425 - CCNA_00885 0.44 +1.5
964,431 - CCNA_00885 0.45 +0.9
964,431 - CCNA_00885 0.45 +2.2
964,431 - CCNA_00885 0.45 +1.9
964,440 + CCNA_00885 0.47 -0.5
964,440 + CCNA_00885 0.47 +0.3
964,440 + CCNA_00885 0.47 -0.3
964,443 - CCNA_00885 0.48 +1.9
964,448 - CCNA_00885 0.48 +1.8
964,461 + CCNA_00885 0.51 -1.7
964,475 + CCNA_00885 0.53 -0.1
964,475 + CCNA_00885 0.53 +0.3
964,483 - CCNA_00885 0.55 +1.3
964,485 - CCNA_00885 0.55 +1.6
964,525 + CCNA_00885 0.62 +0.5
964,531 + CCNA_00885 0.64 -1.7
964,533 - CCNA_00885 0.64 +1.1
964,554 - CCNA_00885 0.68 +0.5
964,554 - CCNA_00885 0.68 +1.4
964,561 - CCNA_00885 0.69 +1.5
964,577 + CCNA_00885 0.72 +0.3
964,577 + CCNA_00885 0.72 -0.3
964,577 + CCNA_00885 0.72 -1.9
964,585 - CCNA_00885 0.73 +2.0
964,595 - CCNA_00885 0.75 +2.1
964,605 - CCNA_00885 0.77 +2.4
964,669 - CCNA_00885 0.89 +2.4
964,708 - +2.6
964,794 - -0.4

Or see this region's nucleotide sequence