Experiment: PYE with nitrite 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00880 and CCNA_00881 overlap by 4 nucleotides CCNA_00881 and CCNA_00882 are separated by 155 nucleotides CCNA_00882 and CCNA_00883 are separated by 191 nucleotides CCNA_00883 and CCNA_00884 are separated by 2 nucleotides
CCNA_00880: CCNA_00880 - hypothetical protein, at 959,391 to 960,950
_00880
CCNA_00881: CCNA_00881 - ABC transporter ATP-binding protein, at 960,947 to 961,699
_00881
CCNA_00882: CCNA_00882 - hypothetical protein, at 961,855 to 962,853
_00882
CCNA_00883: CCNA_00883 - 3-demethylubiquinone 3-methyltransferase, at 963,045 to 963,803
_00883
CCNA_00884: CCNA_00884 - VapC-like PIN domain ribonuclease toxin, at 963,806 to 964,192
_00884
Position (kb) 961
962
963 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 960.864 kb on + strand at 960.888 kb on + strand at 960.946 kb on + strand at 960.952 kb on + strand at 960.963 kb on + strand at 961.019 kb on + strand at 961.086 kb on + strand, within CCNA_00881 at 961.086 kb on + strand, within CCNA_00881 at 961.094 kb on - strand, within CCNA_00881 at 961.116 kb on - strand, within CCNA_00881 at 961.151 kb on + strand, within CCNA_00881 at 961.164 kb on + strand, within CCNA_00881 at 961.190 kb on + strand, within CCNA_00881 at 961.199 kb on + strand, within CCNA_00881 at 961.207 kb on - strand, within CCNA_00881 at 961.207 kb on - strand, within CCNA_00881 at 961.207 kb on - strand, within CCNA_00881 at 961.208 kb on - strand, within CCNA_00881 at 961.217 kb on + strand, within CCNA_00881 at 961.233 kb on - strand, within CCNA_00881 at 961.246 kb on - strand, within CCNA_00881 at 961.260 kb on + strand, within CCNA_00881 at 961.275 kb on - strand, within CCNA_00881 at 961.301 kb on - strand, within CCNA_00881 at 961.318 kb on + strand, within CCNA_00881 at 961.326 kb on - strand, within CCNA_00881 at 961.328 kb on + strand, within CCNA_00881 at 961.337 kb on - strand, within CCNA_00881 at 961.344 kb on + strand, within CCNA_00881 at 961.344 kb on + strand, within CCNA_00881 at 961.344 kb on + strand, within CCNA_00881 at 961.344 kb on + strand, within CCNA_00881 at 961.344 kb on + strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.352 kb on - strand, within CCNA_00881 at 961.365 kb on + strand, within CCNA_00881 at 961.403 kb on + strand, within CCNA_00881 at 961.451 kb on + strand, within CCNA_00881 at 961.462 kb on - strand, within CCNA_00881 at 961.529 kb on + strand, within CCNA_00881 at 961.529 kb on + strand, within CCNA_00881 at 961.536 kb on - strand, within CCNA_00881 at 961.554 kb on + strand, within CCNA_00881 at 961.569 kb on + strand, within CCNA_00881 at 961.574 kb on + strand, within CCNA_00881 at 961.590 kb on + strand at 961.595 kb on + strand, within CCNA_00881 at 961.598 kb on - strand, within CCNA_00881 at 961.603 kb on - strand, within CCNA_00881 at 961.618 kb on + strand, within CCNA_00881 at 961.646 kb on - strand at 961.646 kb on - strand at 961.646 kb on - strand at 961.646 kb on - strand at 961.658 kb on - strand at 961.677 kb on - strand at 961.682 kb on + strand at 961.690 kb on - strand at 961.702 kb on - strand at 961.714 kb on - strand at 961.733 kb on - strand at 961.743 kb on + strand at 961.828 kb on - strand at 961.848 kb on - strand at 961.853 kb on + strand at 961.861 kb on - strand at 961.861 kb on - strand at 961.879 kb on + strand at 961.889 kb on + strand at 961.903 kb on - strand at 961.942 kb on - strand at 961.957 kb on + strand, within CCNA_00882 at 962.002 kb on - strand, within CCNA_00882 at 962.004 kb on + strand, within CCNA_00882 at 962.006 kb on + strand, within CCNA_00882 at 962.028 kb on - strand, within CCNA_00882 at 962.036 kb on + strand, within CCNA_00882 at 962.048 kb on + strand, within CCNA_00882 at 962.054 kb on - strand, within CCNA_00882 at 962.089 kb on - strand, within CCNA_00882 at 962.094 kb on - strand, within CCNA_00882 at 962.095 kb on + strand, within CCNA_00882 at 962.095 kb on + strand, within CCNA_00882 at 962.101 kb on - strand, within CCNA_00882 at 962.103 kb on - strand, within CCNA_00882 at 962.110 kb on - strand, within CCNA_00882 at 962.153 kb on + strand, within CCNA_00882 at 962.153 kb on + strand, within CCNA_00882 at 962.161 kb on - strand, within CCNA_00882 at 962.251 kb on + strand, within CCNA_00882 at 962.296 kb on + strand, within CCNA_00882 at 962.296 kb on + strand, within CCNA_00882 at 962.296 kb on + strand, within CCNA_00882 at 962.296 kb on + strand, within CCNA_00882 at 962.306 kb on - strand, within CCNA_00882 at 962.323 kb on + strand, within CCNA_00882 at 962.323 kb on + strand, within CCNA_00882 at 962.331 kb on - strand, within CCNA_00882 at 962.331 kb on - strand, within CCNA_00882 at 962.331 kb on - strand, within CCNA_00882 at 962.331 kb on - strand, within CCNA_00882 at 962.344 kb on + strand, within CCNA_00882 at 962.344 kb on + strand, within CCNA_00882 at 962.363 kb on + strand, within CCNA_00882 at 962.375 kb on + strand, within CCNA_00882 at 962.376 kb on + strand, within CCNA_00882 at 962.376 kb on + strand, within CCNA_00882 at 962.428 kb on - strand, within CCNA_00882 at 962.445 kb on + strand, within CCNA_00882 at 962.463 kb on - strand, within CCNA_00882 at 962.468 kb on + strand, within CCNA_00882 at 962.481 kb on + strand, within CCNA_00882 at 962.481 kb on + strand, within CCNA_00882 at 962.489 kb on - strand, within CCNA_00882 at 962.489 kb on - strand, within CCNA_00882 at 962.509 kb on - strand, within CCNA_00882 at 962.522 kb on - strand, within CCNA_00882 at 962.553 kb on - strand, within CCNA_00882 at 962.553 kb on - strand, within CCNA_00882 at 962.560 kb on + strand, within CCNA_00882 at 962.576 kb on + strand, within CCNA_00882 at 962.644 kb on + strand, within CCNA_00882 at 962.665 kb on + strand, within CCNA_00882 at 962.680 kb on + strand, within CCNA_00882 at 962.688 kb on - strand, within CCNA_00882 at 962.733 kb on + strand, within CCNA_00882 at 962.742 kb on - strand, within CCNA_00882 at 962.751 kb on + strand, within CCNA_00882 at 962.759 kb on - strand at 962.759 kb on - strand at 962.759 kb on - strand at 962.779 kb on - strand at 962.779 kb on - strand at 962.781 kb on + strand at 962.789 kb on - strand at 962.796 kb on - strand at 962.804 kb on + strand at 962.809 kb on + strand at 962.809 kb on + strand at 962.809 kb on + strand at 962.809 kb on + strand at 962.809 kb on + strand at 962.817 kb on - strand at 962.817 kb on - strand at 962.819 kb on + strand at 962.822 kb on - strand at 962.850 kb on + strand at 962.850 kb on + strand at 962.858 kb on - strand at 962.863 kb on - strand at 962.865 kb on + strand at 962.873 kb on - strand at 962.947 kb on + strand at 962.949 kb on - strand at 962.957 kb on + strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.965 kb on - strand at 962.977 kb on - strand at 962.989 kb on - strand at 962.991 kb on + strand at 962.999 kb on - strand at 963.041 kb on - strand at 963.041 kb on - strand at 963.046 kb on - strand at 963.051 kb on - strand at 963.051 kb on - strand at 963.051 kb on - strand at 963.760 kb on + strand at 963.769 kb on + strand at 963.799 kb on + strand at 963.807 kb on - strand at 963.831 kb on + strand at 963.834 kb on - strand at 963.836 kb on + strand at 963.836 kb on + strand at 963.844 kb on - strand at 963.844 kb on - strand at 963.844 kb on - strand at 963.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 2.5 mM remove 960,864 + -0.4 960,888 + -0.7 960,946 + +0.4 960,952 + -1.1 960,963 + -0.4 961,019 + -0.9 961,086 + CCNA_00881 0.18 +0.5 961,086 + CCNA_00881 0.18 -0.0 961,094 - CCNA_00881 0.20 -0.3 961,116 - CCNA_00881 0.22 -1.2 961,151 + CCNA_00881 0.27 -0.2 961,164 + CCNA_00881 0.29 -2.2 961,190 + CCNA_00881 0.32 +1.6 961,199 + CCNA_00881 0.33 -1.7 961,207 - CCNA_00881 0.35 -1.6 961,207 - CCNA_00881 0.35 -0.5 961,207 - CCNA_00881 0.35 -0.3 961,208 - CCNA_00881 0.35 +0.5 961,217 + CCNA_00881 0.36 -1.1 961,233 - CCNA_00881 0.38 -1.2 961,246 - CCNA_00881 0.40 +0.1 961,260 + CCNA_00881 0.42 -2.6 961,275 - CCNA_00881 0.44 -0.6 961,301 - CCNA_00881 0.47 -2.5 961,318 + CCNA_00881 0.49 -1.7 961,326 - CCNA_00881 0.50 -1.7 961,328 + CCNA_00881 0.51 +0.3 961,337 - CCNA_00881 0.52 -0.9 961,344 + CCNA_00881 0.53 +0.3 961,344 + CCNA_00881 0.53 -2.5 961,344 + CCNA_00881 0.53 -0.9 961,344 + CCNA_00881 0.53 +0.7 961,344 + CCNA_00881 0.53 -1.2 961,352 - CCNA_00881 0.54 -0.7 961,352 - CCNA_00881 0.54 -0.8 961,352 - CCNA_00881 0.54 -1.2 961,352 - CCNA_00881 0.54 -0.9 961,352 - CCNA_00881 0.54 -1.3 961,352 - CCNA_00881 0.54 +0.5 961,352 - CCNA_00881 0.54 -2.2 961,352 - CCNA_00881 0.54 -1.2 961,365 + CCNA_00881 0.56 -0.7 961,403 + CCNA_00881 0.61 -1.4 961,451 + CCNA_00881 0.67 -2.9 961,462 - CCNA_00881 0.68 -0.4 961,529 + CCNA_00881 0.77 +0.3 961,529 + CCNA_00881 0.77 -1.2 961,536 - CCNA_00881 0.78 +0.1 961,554 + CCNA_00881 0.81 -0.5 961,569 + CCNA_00881 0.83 +1.5 961,574 + CCNA_00881 0.83 -0.8 961,590 + +2.7 961,595 + CCNA_00881 0.86 -0.3 961,598 - CCNA_00881 0.86 -2.6 961,603 - CCNA_00881 0.87 +0.1 961,618 + CCNA_00881 0.89 -0.5 961,646 - +0.7 961,646 - -1.4 961,646 - -2.8 961,646 - -0.6 961,658 - -1.2 961,677 - +1.8 961,682 + +0.1 961,690 - +0.4 961,702 - -0.5 961,714 - -0.2 961,733 - -0.9 961,743 + -0.0 961,828 - +0.9 961,848 - -0.4 961,853 + +0.7 961,861 - -1.9 961,861 - -0.3 961,879 + -0.4 961,889 + +0.8 961,903 - -0.6 961,942 - -1.2 961,957 + CCNA_00882 0.10 -1.5 962,002 - CCNA_00882 0.15 -1.2 962,004 + CCNA_00882 0.15 -0.4 962,006 + CCNA_00882 0.15 +1.3 962,028 - CCNA_00882 0.17 -0.8 962,036 + CCNA_00882 0.18 +0.3 962,048 + CCNA_00882 0.19 -0.9 962,054 - CCNA_00882 0.20 -0.4 962,089 - CCNA_00882 0.23 -0.4 962,094 - CCNA_00882 0.24 +0.2 962,095 + CCNA_00882 0.24 -1.3 962,095 + CCNA_00882 0.24 -0.1 962,101 - CCNA_00882 0.25 +0.6 962,103 - CCNA_00882 0.25 -1.1 962,110 - CCNA_00882 0.26 -1.6 962,153 + CCNA_00882 0.30 +0.8 962,153 + CCNA_00882 0.30 -0.3 962,161 - CCNA_00882 0.31 -0.6 962,251 + CCNA_00882 0.40 +0.5 962,296 + CCNA_00882 0.44 -0.9 962,296 + CCNA_00882 0.44 -1.2 962,296 + CCNA_00882 0.44 +0.6 962,296 + CCNA_00882 0.44 -0.7 962,306 - CCNA_00882 0.45 -1.7 962,323 + CCNA_00882 0.47 +0.3 962,323 + CCNA_00882 0.47 -0.8 962,331 - CCNA_00882 0.48 +0.4 962,331 - CCNA_00882 0.48 -0.9 962,331 - CCNA_00882 0.48 -0.9 962,331 - CCNA_00882 0.48 -1.3 962,344 + CCNA_00882 0.49 +0.1 962,344 + CCNA_00882 0.49 +0.3 962,363 + CCNA_00882 0.51 -0.9 962,375 + CCNA_00882 0.52 -0.7 962,376 + CCNA_00882 0.52 -0.7 962,376 + CCNA_00882 0.52 +0.6 962,428 - CCNA_00882 0.57 -0.1 962,445 + CCNA_00882 0.59 +0.7 962,463 - CCNA_00882 0.61 +0.1 962,468 + CCNA_00882 0.61 -0.6 962,481 + CCNA_00882 0.63 -1.4 962,481 + CCNA_00882 0.63 -1.5 962,489 - CCNA_00882 0.63 +0.7 962,489 - CCNA_00882 0.63 -0.5 962,509 - CCNA_00882 0.65 -0.2 962,522 - CCNA_00882 0.67 -1.5 962,553 - CCNA_00882 0.70 -1.9 962,553 - CCNA_00882 0.70 +1.7 962,560 + CCNA_00882 0.71 -0.3 962,576 + CCNA_00882 0.72 +1.4 962,644 + CCNA_00882 0.79 -0.4 962,665 + CCNA_00882 0.81 +0.6 962,680 + CCNA_00882 0.83 -0.2 962,688 - CCNA_00882 0.83 +0.8 962,733 + CCNA_00882 0.88 -1.2 962,742 - CCNA_00882 0.89 +0.9 962,751 + CCNA_00882 0.90 -0.7 962,759 - -1.7 962,759 - -0.9 962,759 - -0.4 962,779 - -1.2 962,779 - +0.1 962,781 + -1.3 962,789 - +1.7 962,796 - -0.7 962,804 + -1.3 962,809 + -1.9 962,809 + -1.1 962,809 + -0.1 962,809 + -0.3 962,809 + -0.9 962,817 - -0.1 962,817 - +0.7 962,819 + -0.4 962,822 - +1.3 962,850 + +0.8 962,850 + -0.0 962,858 - -1.1 962,863 - -1.4 962,865 + -1.7 962,873 - -1.2 962,947 + -1.1 962,949 - -1.4 962,957 + +0.5 962,965 - -0.3 962,965 - -1.0 962,965 - -1.2 962,965 - +1.0 962,965 - -0.1 962,965 - +1.1 962,977 - -1.3 962,989 - +0.0 962,991 + +0.9 962,999 - +0.6 963,041 - +0.7 963,041 - +0.7 963,046 - +1.5 963,051 - +0.1 963,051 - +0.9 963,051 - +0.8 963,760 + +1.0 963,769 + +0.0 963,799 + +2.1 963,807 - -1.1 963,831 + +1.4 963,834 - +0.9 963,836 + +2.3 963,836 + -0.3 963,844 - -0.7 963,844 - -1.0 963,844 - -0.6 963,844 - +0.8
Or see this region's nucleotide sequence