Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00569

Experiment: PYE with nitrite 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00568 and CCNA_00569 overlap by 1 nucleotidesCCNA_00569 and CCNA_00570 are separated by 37 nucleotidesCCNA_00570 and CCNA_00571 are separated by 1 nucleotides CCNA_00568: CCNA_00568 - N-acetylglucosamine-6-phosphate deacetylase, at 585,948 to 587,111 _00568 CCNA_00569: CCNA_00569 - glucosamine-6-phosphate deaminase, at 587,111 to 588,187 _00569 CCNA_00570: CCNA_00570 - GntR-family transcriptional regulator, at 588,225 to 589,130 _00570 CCNA_00571: CCNA_00571 - phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system, glucose-specific IIA subunit, at 589,132 to 591,768 _00571 Position (kb) 587 588 589Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 586.119 kb on - strand, within CCNA_00568at 586.119 kb on - strand, within CCNA_00568at 586.140 kb on + strand, within CCNA_00568at 586.156 kb on + strand, within CCNA_00568at 586.164 kb on - strand, within CCNA_00568at 586.166 kb on - strand, within CCNA_00568at 586.179 kb on + strand, within CCNA_00568at 586.179 kb on + strand, within CCNA_00568at 586.179 kb on + strand, within CCNA_00568at 586.184 kb on + strand, within CCNA_00568at 586.184 kb on + strand, within CCNA_00568at 586.187 kb on - strand, within CCNA_00568at 586.187 kb on - strand, within CCNA_00568at 586.187 kb on - strand, within CCNA_00568at 586.187 kb on - strand, within CCNA_00568at 586.193 kb on - strand, within CCNA_00568at 586.197 kb on - strand, within CCNA_00568at 586.209 kb on - strand, within CCNA_00568at 586.216 kb on + strand, within CCNA_00568at 586.241 kb on - strand, within CCNA_00568at 586.243 kb on - strand, within CCNA_00568at 586.248 kb on + strand, within CCNA_00568at 586.282 kb on + strand, within CCNA_00568at 586.285 kb on - strand, within CCNA_00568at 586.307 kb on + strand, within CCNA_00568at 586.307 kb on + strand, within CCNA_00568at 586.314 kb on - strand, within CCNA_00568at 586.315 kb on - strand, within CCNA_00568at 586.329 kb on + strand, within CCNA_00568at 586.352 kb on - strand, within CCNA_00568at 586.420 kb on - strand, within CCNA_00568at 586.459 kb on + strand, within CCNA_00568at 586.459 kb on + strand, within CCNA_00568at 586.459 kb on + strand, within CCNA_00568at 586.459 kb on + strand, within CCNA_00568at 586.459 kb on + strand, within CCNA_00568at 586.462 kb on - strand, within CCNA_00568at 586.467 kb on - strand, within CCNA_00568at 586.467 kb on - strand, within CCNA_00568at 586.467 kb on - strand, within CCNA_00568at 586.469 kb on + strand, within CCNA_00568at 586.477 kb on - strand, within CCNA_00568at 586.513 kb on + strand, within CCNA_00568at 586.513 kb on + strand, within CCNA_00568at 586.521 kb on - strand, within CCNA_00568at 586.521 kb on - strand, within CCNA_00568at 586.521 kb on - strand, within CCNA_00568at 586.521 kb on - strand, within CCNA_00568at 586.521 kb on - strand, within CCNA_00568at 586.521 kb on - strand, within CCNA_00568at 586.521 kb on - strand, within CCNA_00568at 586.521 kb on - strand, within CCNA_00568at 586.530 kb on + strand, within CCNA_00568at 586.530 kb on + strand, within CCNA_00568at 586.530 kb on + strand, within CCNA_00568at 586.531 kb on + strand, within CCNA_00568at 586.578 kb on + strand, within CCNA_00568at 586.617 kb on - strand, within CCNA_00568at 586.617 kb on - strand, within CCNA_00568at 586.626 kb on + strand, within CCNA_00568at 586.644 kb on - strand, within CCNA_00568at 586.644 kb on - strand, within CCNA_00568at 586.646 kb on + strand, within CCNA_00568at 586.782 kb on + strand, within CCNA_00568at 586.794 kb on + strand, within CCNA_00568at 586.795 kb on - strand, within CCNA_00568at 586.802 kb on + strand, within CCNA_00568at 586.802 kb on - strand, within CCNA_00568at 586.818 kb on + strand, within CCNA_00568at 586.821 kb on - strand, within CCNA_00568at 586.826 kb on - strand, within CCNA_00568at 586.852 kb on - strand, within CCNA_00568at 586.900 kb on + strand, within CCNA_00568at 586.900 kb on + strand, within CCNA_00568at 586.900 kb on + strand, within CCNA_00568at 586.900 kb on + strand, within CCNA_00568at 586.908 kb on - strand, within CCNA_00568at 586.908 kb on - strand, within CCNA_00568at 586.908 kb on - strand, within CCNA_00568at 586.908 kb on - strand, within CCNA_00568at 586.908 kb on - strand, within CCNA_00568at 586.910 kb on - strand, within CCNA_00568at 586.947 kb on + strand, within CCNA_00568at 586.952 kb on + strand, within CCNA_00568at 586.955 kb on - strand, within CCNA_00568at 587.024 kb on + strandat 587.069 kb on - strandat 587.081 kb on + strandat 587.085 kb on - strandat 587.138 kb on - strandat 587.181 kb on - strandat 587.201 kb on + strandat 587.201 kb on + strandat 587.201 kb on - strandat 587.209 kb on - strandat 587.209 kb on - strandat 587.209 kb on - strandat 587.219 kb on - strand, within CCNA_00569at 587.244 kb on + strand, within CCNA_00569at 587.245 kb on - strand, within CCNA_00569at 587.252 kb on - strand, within CCNA_00569at 587.252 kb on - strand, within CCNA_00569at 587.252 kb on - strand, within CCNA_00569at 587.314 kb on + strand, within CCNA_00569at 587.322 kb on - strand, within CCNA_00569at 587.323 kb on - strand, within CCNA_00569at 587.361 kb on + strand, within CCNA_00569at 587.361 kb on + strand, within CCNA_00569at 587.393 kb on - strand, within CCNA_00569at 587.408 kb on + strand, within CCNA_00569at 587.408 kb on + strand, within CCNA_00569at 587.416 kb on - strand, within CCNA_00569at 587.416 kb on - strand, within CCNA_00569at 587.465 kb on + strand, within CCNA_00569at 587.465 kb on + strand, within CCNA_00569at 587.473 kb on - strand, within CCNA_00569at 587.515 kb on - strandat 587.529 kb on - strand, within CCNA_00569at 587.529 kb on - strand, within CCNA_00569at 587.548 kb on - strand, within CCNA_00569at 587.550 kb on + strand, within CCNA_00569at 587.550 kb on + strand, within CCNA_00569at 587.559 kb on - strand, within CCNA_00569at 587.561 kb on + strand, within CCNA_00569at 587.561 kb on + strand, within CCNA_00569at 587.591 kb on + strand, within CCNA_00569at 587.630 kb on + strand, within CCNA_00569at 587.658 kb on - strand, within CCNA_00569at 587.673 kb on + strand, within CCNA_00569at 587.702 kb on - strand, within CCNA_00569at 587.709 kb on - strand, within CCNA_00569at 587.744 kb on + strand, within CCNA_00569at 587.754 kb on - strand, within CCNA_00569at 587.756 kb on + strand, within CCNA_00569at 587.764 kb on - strand, within CCNA_00569at 587.771 kb on - strand, within CCNA_00569at 587.824 kb on + strandat 587.824 kb on + strand, within CCNA_00569at 587.832 kb on - strand, within CCNA_00569at 587.888 kb on + strandat 587.896 kb on - strand, within CCNA_00569at 587.924 kb on + strand, within CCNA_00569at 587.924 kb on + strand, within CCNA_00569at 587.924 kb on + strand, within CCNA_00569at 587.931 kb on + strand, within CCNA_00569at 587.932 kb on - strand, within CCNA_00569at 587.932 kb on - strand, within CCNA_00569at 587.940 kb on - strand, within CCNA_00569at 587.943 kb on + strand, within CCNA_00569at 587.990 kb on - strand, within CCNA_00569at 587.999 kb on + strand, within CCNA_00569at 588.007 kb on - strand, within CCNA_00569at 588.007 kb on - strand, within CCNA_00569at 588.017 kb on - strand, within CCNA_00569at 588.032 kb on - strand, within CCNA_00569at 588.038 kb on + strand, within CCNA_00569at 588.041 kb on - strand, within CCNA_00569at 588.068 kb on + strand, within CCNA_00569at 588.121 kb on - strandat 588.140 kb on - strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.167 kb on + strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.175 kb on - strandat 588.189 kb on - strandat 588.210 kb on - strandat 588.237 kb on + strandat 588.317 kb on - strand, within CCNA_00570at 588.365 kb on + strand, within CCNA_00570at 588.366 kb on - strandat 588.382 kb on + strand, within CCNA_00570at 588.387 kb on + strand, within CCNA_00570at 588.390 kb on - strand, within CCNA_00570at 588.395 kb on - strand, within CCNA_00570at 588.450 kb on - strand, within CCNA_00570at 588.456 kb on - strand, within CCNA_00570at 588.462 kb on + strand, within CCNA_00570at 588.478 kb on + strand, within CCNA_00570at 588.483 kb on + strand, within CCNA_00570at 588.483 kb on + strand, within CCNA_00570at 588.486 kb on - strand, within CCNA_00570at 588.491 kb on - strand, within CCNA_00570at 588.496 kb on - strand, within CCNA_00570at 588.564 kb on - strand, within CCNA_00570at 588.591 kb on + strand, within CCNA_00570at 588.602 kb on + strand, within CCNA_00570at 588.602 kb on + strand, within CCNA_00570at 588.610 kb on - strand, within CCNA_00570at 588.650 kb on + strand, within CCNA_00570at 588.658 kb on - strand, within CCNA_00570at 588.658 kb on - strand, within CCNA_00570at 588.750 kb on + strand, within CCNA_00570at 588.750 kb on + strand, within CCNA_00570at 588.758 kb on + strand, within CCNA_00570at 588.758 kb on - strand, within CCNA_00570at 588.784 kb on + strand, within CCNA_00570at 588.787 kb on - strand, within CCNA_00570at 588.792 kb on - strand, within CCNA_00570at 588.792 kb on - strand, within CCNA_00570at 588.816 kb on + strand, within CCNA_00570at 588.816 kb on + strand, within CCNA_00570at 588.816 kb on + strand, within CCNA_00570at 588.816 kb on + strand, within CCNA_00570at 588.824 kb on - strand, within CCNA_00570at 588.890 kb on + strand, within CCNA_00570at 588.916 kb on + strand, within CCNA_00570at 588.944 kb on - strand, within CCNA_00570at 589.002 kb on - strand, within CCNA_00570at 589.061 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 2.5 mM
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586,119 - CCNA_00568 0.15 +0.2
586,119 - CCNA_00568 0.15 -0.8
586,140 + CCNA_00568 0.16 +0.3
586,156 + CCNA_00568 0.18 -0.6
586,164 - CCNA_00568 0.19 +0.6
586,166 - CCNA_00568 0.19 -0.2
586,179 + CCNA_00568 0.20 -1.1
586,179 + CCNA_00568 0.20 -1.8
586,179 + CCNA_00568 0.20 -0.8
586,184 + CCNA_00568 0.20 +0.1
586,184 + CCNA_00568 0.20 -2.1
586,187 - CCNA_00568 0.21 -0.5
586,187 - CCNA_00568 0.21 -1.2
586,187 - CCNA_00568 0.21 -0.0
586,187 - CCNA_00568 0.21 -0.0
586,193 - CCNA_00568 0.21 -0.1
586,197 - CCNA_00568 0.21 +1.6
586,209 - CCNA_00568 0.22 +2.4
586,216 + CCNA_00568 0.23 -0.2
586,241 - CCNA_00568 0.25 +0.0
586,243 - CCNA_00568 0.25 -2.2
586,248 + CCNA_00568 0.26 -1.8
586,282 + CCNA_00568 0.29 -0.9
586,285 - CCNA_00568 0.29 -0.7
586,307 + CCNA_00568 0.31 +0.4
586,307 + CCNA_00568 0.31 -3.1
586,314 - CCNA_00568 0.31 -0.0
586,315 - CCNA_00568 0.32 -0.0
586,329 + CCNA_00568 0.33 +2.1
586,352 - CCNA_00568 0.35 -1.5
586,420 - CCNA_00568 0.41 -1.5
586,459 + CCNA_00568 0.44 -0.1
586,459 + CCNA_00568 0.44 +1.6
586,459 + CCNA_00568 0.44 +0.8
586,459 + CCNA_00568 0.44 +1.8
586,459 + CCNA_00568 0.44 -1.6
586,462 - CCNA_00568 0.44 +1.5
586,467 - CCNA_00568 0.45 +1.1
586,467 - CCNA_00568 0.45 +0.2
586,467 - CCNA_00568 0.45 -0.6
586,469 + CCNA_00568 0.45 -0.0
586,477 - CCNA_00568 0.45 -2.2
586,513 + CCNA_00568 0.49 -1.2
586,513 + CCNA_00568 0.49 -0.1
586,521 - CCNA_00568 0.49 +0.3
586,521 - CCNA_00568 0.49 -2.4
586,521 - CCNA_00568 0.49 -0.5
586,521 - CCNA_00568 0.49 +0.0
586,521 - CCNA_00568 0.49 +0.8
586,521 - CCNA_00568 0.49 -1.0
586,521 - CCNA_00568 0.49 -0.5
586,521 - CCNA_00568 0.49 -1.2
586,530 + CCNA_00568 0.50 -1.0
586,530 + CCNA_00568 0.50 -1.3
586,530 + CCNA_00568 0.50 -1.1
586,531 + CCNA_00568 0.50 +0.6
586,578 + CCNA_00568 0.54 -1.3
586,617 - CCNA_00568 0.57 -0.5
586,617 - CCNA_00568 0.57 -0.7
586,626 + CCNA_00568 0.58 +0.4
586,644 - CCNA_00568 0.60 -1.3
586,644 - CCNA_00568 0.60 -1.4
586,646 + CCNA_00568 0.60 +2.3
586,782 + CCNA_00568 0.72 +0.4
586,794 + CCNA_00568 0.73 -1.4
586,795 - CCNA_00568 0.73 -1.6
586,802 + CCNA_00568 0.73 +2.1
586,802 - CCNA_00568 0.73 -0.8
586,818 + CCNA_00568 0.75 -1.4
586,821 - CCNA_00568 0.75 -2.2
586,826 - CCNA_00568 0.75 -0.8
586,852 - CCNA_00568 0.78 +0.0
586,900 + CCNA_00568 0.82 +1.2
586,900 + CCNA_00568 0.82 -1.0
586,900 + CCNA_00568 0.82 -0.5
586,900 + CCNA_00568 0.82 +0.6
586,908 - CCNA_00568 0.82 -0.0
586,908 - CCNA_00568 0.82 +0.5
586,908 - CCNA_00568 0.82 -0.6
586,908 - CCNA_00568 0.82 +0.8
586,908 - CCNA_00568 0.82 -1.4
586,910 - CCNA_00568 0.83 -0.7
586,947 + CCNA_00568 0.86 +1.8
586,952 + CCNA_00568 0.86 -0.1
586,955 - CCNA_00568 0.87 +0.8
587,024 + -0.2
587,069 - -0.6
587,081 + -1.1
587,085 - +0.2
587,138 - -0.5
587,181 - -1.3
587,201 + -0.6
587,201 + -1.8
587,201 - -1.0
587,209 - -0.6
587,209 - +0.3
587,209 - -2.8
587,219 - CCNA_00569 0.10 -0.4
587,244 + CCNA_00569 0.12 +0.1
587,245 - CCNA_00569 0.12 -1.1
587,252 - CCNA_00569 0.13 -0.3
587,252 - CCNA_00569 0.13 -0.7
587,252 - CCNA_00569 0.13 +0.6
587,314 + CCNA_00569 0.19 -0.5
587,322 - CCNA_00569 0.20 +0.0
587,323 - CCNA_00569 0.20 -0.5
587,361 + CCNA_00569 0.23 +0.7
587,361 + CCNA_00569 0.23 -1.2
587,393 - CCNA_00569 0.26 +0.5
587,408 + CCNA_00569 0.28 +1.0
587,408 + CCNA_00569 0.28 -0.8
587,416 - CCNA_00569 0.28 -0.7
587,416 - CCNA_00569 0.28 -0.0
587,465 + CCNA_00569 0.33 -1.4
587,465 + CCNA_00569 0.33 -1.2
587,473 - CCNA_00569 0.34 -0.9
587,515 - +0.4
587,529 - CCNA_00569 0.39 -0.2
587,529 - CCNA_00569 0.39 -0.1
587,548 - CCNA_00569 0.41 -1.0
587,550 + CCNA_00569 0.41 +1.8
587,550 + CCNA_00569 0.41 +1.7
587,559 - CCNA_00569 0.42 -0.9
587,561 + CCNA_00569 0.42 +1.8
587,561 + CCNA_00569 0.42 -0.5
587,591 + CCNA_00569 0.45 -1.2
587,630 + CCNA_00569 0.48 +3.6
587,658 - CCNA_00569 0.51 +0.8
587,673 + CCNA_00569 0.52 -0.7
587,702 - CCNA_00569 0.55 -0.7
587,709 - CCNA_00569 0.56 -1.3
587,744 + CCNA_00569 0.59 +1.6
587,754 - CCNA_00569 0.60 -0.9
587,756 + CCNA_00569 0.60 +1.1
587,764 - CCNA_00569 0.61 -2.2
587,771 - CCNA_00569 0.61 -2.0
587,824 + +1.3
587,824 + CCNA_00569 0.66 -1.4
587,832 - CCNA_00569 0.67 -0.0
587,888 + +1.3
587,896 - CCNA_00569 0.73 -1.6
587,924 + CCNA_00569 0.75 -0.6
587,924 + CCNA_00569 0.75 -1.0
587,924 + CCNA_00569 0.75 -0.3
587,931 + CCNA_00569 0.76 -1.1
587,932 - CCNA_00569 0.76 +1.0
587,932 - CCNA_00569 0.76 -1.6
587,940 - CCNA_00569 0.77 +0.3
587,943 + CCNA_00569 0.77 +0.9
587,990 - CCNA_00569 0.82 -0.7
587,999 + CCNA_00569 0.82 -1.9
588,007 - CCNA_00569 0.83 -0.8
588,007 - CCNA_00569 0.83 -0.2
588,017 - CCNA_00569 0.84 -0.3
588,032 - CCNA_00569 0.86 -1.3
588,038 + CCNA_00569 0.86 -0.3
588,041 - CCNA_00569 0.86 -1.6
588,068 + CCNA_00569 0.89 -3.1
588,121 - -0.5
588,140 - +0.6
588,167 + +0.1
588,167 + -1.8
588,167 + +0.9
588,167 + +0.6
588,167 + +0.3
588,167 + +2.4
588,167 + -0.2
588,167 + +0.6
588,167 + +1.6
588,167 + +0.4
588,167 + +0.6
588,167 + -1.7
588,167 + -1.6
588,175 - -1.2
588,175 - +0.4
588,175 - +0.5
588,175 - -0.5
588,175 - -0.3
588,175 - -0.1
588,175 - +1.3
588,175 - -0.3
588,175 - -0.5
588,175 - -0.5
588,175 - -0.9
588,175 - +0.9
588,189 - +1.4
588,210 - -1.3
588,237 + +0.9
588,317 - CCNA_00570 0.10 -1.9
588,365 + CCNA_00570 0.15 -0.3
588,366 - +1.0
588,382 + CCNA_00570 0.17 +2.6
588,387 + CCNA_00570 0.18 +0.7
588,390 - CCNA_00570 0.18 -0.4
588,395 - CCNA_00570 0.19 +1.4
588,450 - CCNA_00570 0.25 -0.0
588,456 - CCNA_00570 0.25 +2.3
588,462 + CCNA_00570 0.26 +0.1
588,478 + CCNA_00570 0.28 -1.5
588,483 + CCNA_00570 0.28 -1.5
588,483 + CCNA_00570 0.28 -1.9
588,486 - CCNA_00570 0.29 +0.8
588,491 - CCNA_00570 0.29 +0.1
588,496 - CCNA_00570 0.30 +0.7
588,564 - CCNA_00570 0.37 -1.6
588,591 + CCNA_00570 0.40 -0.3
588,602 + CCNA_00570 0.42 +0.3
588,602 + CCNA_00570 0.42 +0.8
588,610 - CCNA_00570 0.42 +0.4
588,650 + CCNA_00570 0.47 -0.2
588,658 - CCNA_00570 0.48 -0.6
588,658 - CCNA_00570 0.48 -0.6
588,750 + CCNA_00570 0.58 -1.6
588,750 + CCNA_00570 0.58 +0.5
588,758 + CCNA_00570 0.59 -0.5
588,758 - CCNA_00570 0.59 +1.8
588,784 + CCNA_00570 0.62 -2.5
588,787 - CCNA_00570 0.62 -1.8
588,792 - CCNA_00570 0.63 -0.7
588,792 - CCNA_00570 0.63 -1.4
588,816 + CCNA_00570 0.65 -1.1
588,816 + CCNA_00570 0.65 -0.0
588,816 + CCNA_00570 0.65 -0.3
588,816 + CCNA_00570 0.65 -0.4
588,824 - CCNA_00570 0.66 -0.7
588,890 + CCNA_00570 0.73 -0.1
588,916 + CCNA_00570 0.76 -1.2
588,944 - CCNA_00570 0.79 -0.3
589,002 - CCNA_00570 0.86 +1.7
589,061 + -0.2

Or see this region's nucleotide sequence