Experiment: no_plant_soil sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22990 and ABZR87_RS22995 overlap by 10 nucleotides ABZR87_RS22995 and ABZR87_RS23000 overlap by 4 nucleotides ABZR87_RS23000 and ABZR87_RS23005 are separated by 52 nucleotides
ABZR87_RS22990: ABZR87_RS22990 - SDR family oxidoreductase, at 1,518,039 to 1,518,800
_RS22990
ABZR87_RS22995: ABZR87_RS22995 - HAD-IIIA family hydrolase, at 1,518,791 to 1,519,459
_RS22995
ABZR87_RS23000: ABZR87_RS23000 - lipopolysaccharide heptosyltransferase II, at 1,519,456 to 1,520,673
_RS23000
ABZR87_RS23005: ABZR87_RS23005 - carbamoyltransferase C-terminal domain-containing protein, at 1,520,726 to 1,522,552
_RS23005
Position (kb) 1519
1520
1521 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1518.731 kb on - strand at 1518.878 kb on + strand, within ABZR87_RS22995 at 1518.878 kb on + strand, within ABZR87_RS22995 at 1518.879 kb on - strand, within ABZR87_RS22995 at 1518.999 kb on - strand, within ABZR87_RS22995 at 1519.083 kb on - strand, within ABZR87_RS22995 at 1519.083 kb on - strand, within ABZR87_RS22995 at 1519.319 kb on + strand, within ABZR87_RS22995 at 1519.320 kb on - strand, within ABZR87_RS22995 at 1519.320 kb on - strand, within ABZR87_RS22995 at 1519.788 kb on + strand, within ABZR87_RS23000 at 1520.033 kb on + strand, within ABZR87_RS23000 at 1520.034 kb on - strand, within ABZR87_RS23000 at 1520.034 kb on - strand, within ABZR87_RS23000 at 1520.413 kb on + strand, within ABZR87_RS23000 at 1520.413 kb on + strand, within ABZR87_RS23000 at 1520.414 kb on - strand, within ABZR87_RS23000 at 1520.576 kb on + strand at 1520.696 kb on + strand at 1520.696 kb on + strand at 1520.696 kb on + strand at 1520.697 kb on - strand at 1520.744 kb on + strand at 1520.769 kb on - strand at 1520.891 kb on + strand at 1520.958 kb on - strand, within ABZR87_RS23005 at 1520.958 kb on - strand, within ABZR87_RS23005 at 1521.083 kb on + strand, within ABZR87_RS23005 at 1521.083 kb on + strand, within ABZR87_RS23005 at 1521.083 kb on + strand, within ABZR87_RS23005 at 1521.084 kb on - strand, within ABZR87_RS23005 at 1521.084 kb on - strand, within ABZR87_RS23005 at 1521.233 kb on + strand, within ABZR87_RS23005 at 1521.291 kb on - strand, within ABZR87_RS23005 at 1521.314 kb on + strand, within ABZR87_RS23005 at 1521.362 kb on + strand, within ABZR87_RS23005 at 1521.362 kb on + strand, within ABZR87_RS23005 at 1521.363 kb on - strand, within ABZR87_RS23005 at 1521.380 kb on + strand, within ABZR87_RS23005 at 1521.381 kb on - strand, within ABZR87_RS23005 at 1521.381 kb on - strand, within ABZR87_RS23005 at 1521.410 kb on + strand, within ABZR87_RS23005 at 1521.410 kb on + strand, within ABZR87_RS23005 at 1521.410 kb on + strand, within ABZR87_RS23005 at 1521.411 kb on - strand, within ABZR87_RS23005 at 1521.411 kb on - strand, within ABZR87_RS23005 at 1521.435 kb on - strand, within ABZR87_RS23005 at 1521.435 kb on - strand, within ABZR87_RS23005 at 1521.435 kb on - strand, within ABZR87_RS23005 at 1521.435 kb on - strand, within ABZR87_RS23005 at 1521.449 kb on + strand, within ABZR87_RS23005 at 1521.450 kb on - strand, within ABZR87_RS23005 at 1521.497 kb on + strand, within ABZR87_RS23005
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 2; outgrowth in LB remove 1,518,731 - -0.5 1,518,878 + ABZR87_RS22995 0.13 -0.2 1,518,878 + ABZR87_RS22995 0.13 +1.0 1,518,879 - ABZR87_RS22995 0.13 +0.6 1,518,999 - ABZR87_RS22995 0.31 +0.8 1,519,083 - ABZR87_RS22995 0.44 +0.5 1,519,083 - ABZR87_RS22995 0.44 +0.3 1,519,319 + ABZR87_RS22995 0.79 +0.3 1,519,320 - ABZR87_RS22995 0.79 -0.1 1,519,320 - ABZR87_RS22995 0.79 +1.3 1,519,788 + ABZR87_RS23000 0.27 +1.0 1,520,033 + ABZR87_RS23000 0.47 +0.2 1,520,034 - ABZR87_RS23000 0.47 +0.3 1,520,034 - ABZR87_RS23000 0.47 +0.9 1,520,413 + ABZR87_RS23000 0.79 +0.5 1,520,413 + ABZR87_RS23000 0.79 +2.0 1,520,414 - ABZR87_RS23000 0.79 +0.6 1,520,576 + -0.3 1,520,696 + +0.4 1,520,696 + -0.5 1,520,696 + -0.2 1,520,697 - -0.2 1,520,744 + -0.0 1,520,769 - +0.0 1,520,891 + +1.1 1,520,958 - ABZR87_RS23005 0.13 -0.0 1,520,958 - ABZR87_RS23005 0.13 +1.2 1,521,083 + ABZR87_RS23005 0.20 +0.2 1,521,083 + ABZR87_RS23005 0.20 -2.8 1,521,083 + ABZR87_RS23005 0.20 +0.6 1,521,084 - ABZR87_RS23005 0.20 +0.0 1,521,084 - ABZR87_RS23005 0.20 -0.9 1,521,233 + ABZR87_RS23005 0.28 -0.0 1,521,291 - ABZR87_RS23005 0.31 -0.1 1,521,314 + ABZR87_RS23005 0.32 +0.1 1,521,362 + ABZR87_RS23005 0.35 -0.7 1,521,362 + ABZR87_RS23005 0.35 +0.4 1,521,363 - ABZR87_RS23005 0.35 +1.2 1,521,380 + ABZR87_RS23005 0.36 +0.5 1,521,381 - ABZR87_RS23005 0.36 +0.3 1,521,381 - ABZR87_RS23005 0.36 +0.0 1,521,410 + ABZR87_RS23005 0.37 +1.6 1,521,410 + ABZR87_RS23005 0.37 +0.9 1,521,410 + ABZR87_RS23005 0.37 +1.0 1,521,411 - ABZR87_RS23005 0.37 -0.0 1,521,411 - ABZR87_RS23005 0.37 +1.3 1,521,435 - ABZR87_RS23005 0.39 -0.6 1,521,435 - ABZR87_RS23005 0.39 -0.6 1,521,435 - ABZR87_RS23005 0.39 +0.0 1,521,435 - ABZR87_RS23005 0.39 -1.0 1,521,449 + ABZR87_RS23005 0.40 +0.3 1,521,450 - ABZR87_RS23005 0.40 +0.6 1,521,497 + ABZR87_RS23005 0.42 +2.1
Or see this region's nucleotide sequence