Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22335

Experiment: no_plant_soil sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no_plant_soil sample 2; outgrowth in LB
1,367,206	+				+1.2
1,367,206	+				+1.5
1,367,206	+				+2.5
1,367,206	+				+2.4
1,367,206	+				+1.6
1,367,206	+				+2.1
1,367,206	+				+1.5
1,367,206	+				+0.0
1,367,207	-				-2.1
1,367,207	-				-1.3
1,367,207	-				-1.4
1,367,207	-				-3.5
1,367,207	-				-1.0
1,367,207	-				-1.4
1,367,229	+				+1.4
1,367,266	-				-0.2
1,367,406	+				+2.8
1,367,407	-				+1.2
1,367,411	+				+2.8
1,367,428	+				+2.8
1,367,429	-				+0.3
1,367,438	+				+3.0
1,367,438	+				+3.1
1,367,439	-				+1.0
1,367,439	-				+1.2
1,367,467	+				+2.8
1,367,467	+				+2.9
1,367,467	+				+3.5
1,367,467	+				+3.2
1,367,468	-				+1.0
1,367,468	-				+1.4
1,367,468	-				+1.1
1,367,542	+				+2.8
1,367,542	+				+3.1
1,367,543	-				+2.5
1,367,628	-				+1.3
1,367,628	-				+1.6
1,367,704	+				+1.7
1,367,704	+				+1.7
1,367,705	-				+0.2
1,367,705	-				+0.9
1,367,707	+				+1.6
1,367,707	+				+1.9
1,367,707	+				+1.4
1,367,708	-				+1.2
1,367,708	-				-0.0
1,367,800	+		ABZR87_RS22330	0.34	+2.5
1,367,800	+		ABZR87_RS22330	0.34	+1.9
1,367,934	+		ABZR87_RS22330	0.71	+1.3
1,367,934	+		ABZR87_RS22330	0.71	+2.5
1,367,934	+		ABZR87_RS22330	0.71	+2.7
1,367,934	+		ABZR87_RS22330	0.71	+2.2
1,367,935	-		ABZR87_RS22330	0.72	+0.0
1,368,135	+				+2.4
1,368,135	+				+1.7
1,368,136	-				+0.3
1,368,152	+				-1.5
1,368,152	+				+1.4
1,368,152	+				+1.5
1,368,152	+				+1.9
1,368,152	+				+1.9
1,368,152	+				+1.8
1,368,153	-				-0.4
1,368,153	-				+1.4
1,368,153	-				+0.0
1,368,153	-				+0.3
1,368,227	+				+0.1
1,368,227	+				+0.1
1,368,227	+				-1.8
1,368,227	+				-0.4
1,368,227	+				-0.8
1,368,227	+				-0.4
1,368,227	+				-0.9
1,368,227	+				+0.2
1,368,227	+				+1.6
1,368,227	+				+0.2
1,368,227	+				-0.4
1,368,228	-				+1.6
1,368,228	-				-0.1
1,368,228	-				+0.0
1,368,228	-				+0.3
1,368,525	+		ABZR87_RS22335	0.13	+0.1
1,368,526	-		ABZR87_RS22335	0.13	-0.0
1,368,764	+		ABZR87_RS22335	0.22	-0.4
1,368,764	+		ABZR87_RS22335	0.22	-0.7
1,368,764	+		ABZR87_RS22335	0.22	+0.3
1,368,764	+		ABZR87_RS22335	0.22	-0.2
1,368,764	+		ABZR87_RS22335	0.22	+0.6
1,368,765	-		ABZR87_RS22335	0.22	+0.5
1,368,765	-		ABZR87_RS22335	0.22	+0.1
1,368,765	-		ABZR87_RS22335	0.22	-0.1
1,368,981	+		ABZR87_RS22335	0.30	-0.3
1,368,981	+		ABZR87_RS22335	0.30	+0.6
1,368,982	-		ABZR87_RS22335	0.30	+0.2
1,368,982	-		ABZR87_RS22335	0.30	+0.3
1,369,106	+		ABZR87_RS22335	0.35	-0.5
1,369,106	+		ABZR87_RS22335	0.35	+0.3
1,369,107	-		ABZR87_RS22335	0.35	+0.3
1,369,107	-		ABZR87_RS22335	0.35	+1.1
1,369,107	-		ABZR87_RS22335	0.35	+1.3
1,369,108	+		ABZR87_RS22335	0.35	+0.6
1,369,108	+		ABZR87_RS22335	0.35	+0.2
1,369,109	-		ABZR87_RS22335	0.35	+0.0
1,369,148	+		ABZR87_RS22335	0.36	+0.9
1,369,148	+		ABZR87_RS22335	0.36	+0.2
1,369,225	+		ABZR87_RS22335	0.39	+0.4
1,369,226	-		ABZR87_RS22335	0.39	+0.2
1,369,226	-		ABZR87_RS22335	0.39	+0.2
1,369,247	+		ABZR87_RS22335	0.40	+0.5
1,369,248	-		ABZR87_RS22335	0.40	+0.7
1,369,248	-		ABZR87_RS22335	0.40	+0.7
1,369,248	-		ABZR87_RS22335	0.40	+0.2
1,369,551	-		ABZR87_RS22335	0.51	+0.4
1,369,551	-		ABZR87_RS22335	0.51	+2.9
1,369,551	-		ABZR87_RS22335	0.51	+0.3
1,369,673	+		ABZR87_RS22335	0.56	-0.2
1,369,673	+		ABZR87_RS22335	0.56	+0.8
1,369,673	+		ABZR87_RS22335	0.56	-0.3
1,369,673	+		ABZR87_RS22335	0.56	-0.3
1,369,673	+		ABZR87_RS22335	0.56	+1.0
1,369,673	+		ABZR87_RS22335	0.56	+1.3
1,369,673	+		ABZR87_RS22335	0.56	+0.4
1,369,673	+		ABZR87_RS22335	0.56	+0.1
1,369,673	+		ABZR87_RS22335	0.56	-0.4
1,369,674	-		ABZR87_RS22335	0.56	-0.0
1,369,674	-		ABZR87_RS22335	0.56	+0.5
1,369,674	-		ABZR87_RS22335	0.56	+0.4
1,369,674	-		ABZR87_RS22335	0.56	+0.1
1,369,675	+		ABZR87_RS22335	0.56	-0.2
1,369,891	+		ABZR87_RS22335	0.64	-1.0
1,370,000	+		ABZR87_RS22335	0.68	-0.4
1,370,000	+		ABZR87_RS22335	0.68	-0.2
1,370,000	+		ABZR87_RS22335	0.68	-0.2
1,370,000	+		ABZR87_RS22335	0.68	+0.0
1,370,000	+		ABZR87_RS22335	0.68	-0.3
1,370,001	-		ABZR87_RS22335	0.68	-0.4
1,370,001	-		ABZR87_RS22335	0.68	+0.3
1,370,001	-		ABZR87_RS22335	0.68	+1.0
1,370,133	-		ABZR87_RS22335	0.73	+2.5
1,370,133	-		ABZR87_RS22335	0.73	+0.7
1,370,133	-		ABZR87_RS22335	0.73	+0.0
1,370,133	-		ABZR87_RS22335	0.73	+0.2
1,370,133	-		ABZR87_RS22335	0.73	-0.6
1,370,144	+		ABZR87_RS22335	0.74	+1.0
1,370,144	+		ABZR87_RS22335	0.74	-0.4
1,370,145	-		ABZR87_RS22335	0.74	-0.2
1,370,145	-		ABZR87_RS22335	0.74	-0.3
1,370,145	-		ABZR87_RS22335	0.74	-0.2
1,370,169	+		ABZR87_RS22335	0.75	+0.2
1,370,169	+		ABZR87_RS22335	0.75	+0.5
1,370,170	-		ABZR87_RS22335	0.75	+0.7
1,370,218	-		ABZR87_RS22335	0.76	+0.1
1,370,259	-		ABZR87_RS22335	0.78	+0.2
1,370,573	+		ABZR87_RS22335	0.90	+0.6
1,370,574	-		ABZR87_RS22335	0.90	+1.2
1,370,574	-		ABZR87_RS22335	0.90	+0.3
1,370,849	+				-0.1
1,370,850	-				-0.7
1,370,933	+				-0.3
1,370,933	+				-0.1
1,370,934	-				+0.3
1,370,934	-				-0.2
1,371,037	+		ABZR87_RS22340	0.57	+0.1
1,371,058	+		ABZR87_RS22340	0.67	-0.8
1,371,213	-				-0.7
1,371,213	-				-0.6
1,371,213	-				+0.1
1,371,326	+				-1.6
1,371,326	+				+0.9
1,371,326	+				+0.2
1,371,327	-				+0.9
1,371,327	-				-0.1
1,371,327	-				+1.0
1,371,327	-				-0.1
1,371,327	-				-0.2
1,371,327	-				-0.2
1,371,327	-				+0.5
1,371,463	+				+0.7
1,371,463	+				+0.3
1,371,464	-				+0.5
1,371,464	-				-0.4
1,371,464	-				+0.1
1,371,464	-				-0.1
1,371,485	+				-1.4
1,371,595	+				-0.1
1,371,595	+				+0.4
1,371,595	+				-0.2
1,371,595	+				-0.1
1,371,595	+				+0.4
1,371,595	+				+0.8
1,371,596	-				+0.0
1,371,596	-				+0.2
1,371,596	-				+0.2
1,371,596	-				-0.2
1,371,619	-				+0.6
1,371,711	-				+0.6