Experiment: no_plant_soil sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19455 and ABZR87_RS19460 are separated by 106 nucleotides ABZR87_RS19460 and ABZR87_RS19465 are separated by 87 nucleotides ABZR87_RS19465 and ABZR87_RS19470 are separated by 168 nucleotides
ABZR87_RS19455: ABZR87_RS19455 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 734,124 to 736,175
_RS19455
ABZR87_RS19460: ABZR87_RS19460 - hypothetical protein, at 736,282 to 736,488
_RS19460
ABZR87_RS19465: ABZR87_RS19465 - tyrosine-type recombinase/integrase, at 736,576 to 737,556
_RS19465
ABZR87_RS19470: ABZR87_RS19470 - UDP-glucose 4-epimerase GalE, at 737,725 to 738,750
_RS19470
Position (kb) 736
737
738 Strain fitness (log2 ratio) -2
-1
0
1
2 at 735.595 kb on + strand, within ABZR87_RS19455 at 735.596 kb on - strand, within ABZR87_RS19455 at 735.658 kb on + strand, within ABZR87_RS19455 at 735.658 kb on + strand, within ABZR87_RS19455 at 735.658 kb on + strand, within ABZR87_RS19455 at 735.659 kb on - strand, within ABZR87_RS19455 at 736.031 kb on - strand at 736.031 kb on - strand at 736.148 kb on - strand at 736.263 kb on + strand at 736.263 kb on + strand at 736.263 kb on + strand at 736.264 kb on - strand at 736.484 kb on + strand at 736.484 kb on + strand at 736.484 kb on + strand at 736.485 kb on - strand at 736.485 kb on - strand at 736.485 kb on - strand at 736.485 kb on - strand at 736.485 kb on - strand at 736.485 kb on - strand at 736.500 kb on + strand at 736.500 kb on + strand at 736.501 kb on - strand at 736.561 kb on - strand at 736.561 kb on - strand at 736.691 kb on - strand, within ABZR87_RS19465 at 736.714 kb on + strand, within ABZR87_RS19465 at 736.715 kb on - strand, within ABZR87_RS19465 at 736.843 kb on + strand, within ABZR87_RS19465 at 736.843 kb on + strand, within ABZR87_RS19465 at 736.844 kb on - strand, within ABZR87_RS19465 at 737.192 kb on - strand, within ABZR87_RS19465 at 737.192 kb on - strand, within ABZR87_RS19465 at 737.326 kb on + strand, within ABZR87_RS19465 at 737.413 kb on + strand, within ABZR87_RS19465 at 737.462 kb on - strand at 737.512 kb on + strand at 737.512 kb on + strand at 737.513 kb on - strand at 737.513 kb on - strand at 737.554 kb on + strand at 737.554 kb on + strand at 737.554 kb on + strand at 737.554 kb on + strand at 737.555 kb on - strand at 737.555 kb on - strand at 737.555 kb on - strand at 737.615 kb on + strand at 737.616 kb on - strand at 737.616 kb on - strand at 737.631 kb on + strand at 737.632 kb on - strand at 737.660 kb on + strand at 737.660 kb on + strand at 737.660 kb on + strand at 737.660 kb on + strand at 737.660 kb on + strand at 737.660 kb on + strand at 737.661 kb on - strand at 737.693 kb on + strand at 737.693 kb on + strand at 737.694 kb on - strand at 737.694 kb on - strand at 737.694 kb on - strand at 737.694 kb on - strand at 737.694 kb on - strand at 737.694 kb on - strand at 737.694 kb on - strand at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 738.016 kb on + strand, within ABZR87_RS19470 at 738.016 kb on + strand, within ABZR87_RS19470 at 738.016 kb on + strand, within ABZR87_RS19470 at 738.019 kb on + strand, within ABZR87_RS19470 at 738.020 kb on - strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.127 kb on - strand, within ABZR87_RS19470 at 738.247 kb on + strand, within ABZR87_RS19470 at 738.247 kb on + strand, within ABZR87_RS19470 at 738.248 kb on - strand, within ABZR87_RS19470 at 738.256 kb on + strand, within ABZR87_RS19470 at 738.256 kb on + strand, within ABZR87_RS19470 at 738.257 kb on - strand, within ABZR87_RS19470 at 738.257 kb on - strand, within ABZR87_RS19470 at 738.257 kb on - strand, within ABZR87_RS19470 at 738.334 kb on + strand, within ABZR87_RS19470 at 738.334 kb on + strand, within ABZR87_RS19470 at 738.334 kb on + strand, within ABZR87_RS19470 at 738.334 kb on + strand, within ABZR87_RS19470 at 738.335 kb on + strand, within ABZR87_RS19470 at 738.335 kb on - strand, within ABZR87_RS19470 at 738.335 kb on - strand, within ABZR87_RS19470 at 738.335 kb on - strand, within ABZR87_RS19470 at 738.335 kb on - strand, within ABZR87_RS19470 at 738.424 kb on + strand, within ABZR87_RS19470 at 738.424 kb on + strand, within ABZR87_RS19470 at 738.424 kb on + strand, within ABZR87_RS19470 at 738.424 kb on + strand, within ABZR87_RS19470 at 738.425 kb on - strand, within ABZR87_RS19470 at 738.425 kb on - strand, within ABZR87_RS19470 at 738.425 kb on - strand, within ABZR87_RS19470 at 738.425 kb on - strand, within ABZR87_RS19470 at 738.553 kb on + strand, within ABZR87_RS19470
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 2; outgrowth in LB remove 735,595 + ABZR87_RS19455 0.72 -0.2 735,596 - ABZR87_RS19455 0.72 +0.1 735,658 + ABZR87_RS19455 0.75 -0.8 735,658 + ABZR87_RS19455 0.75 +0.6 735,658 + ABZR87_RS19455 0.75 +0.1 735,659 - ABZR87_RS19455 0.75 +0.3 736,031 - -0.6 736,031 - +0.4 736,148 - +0.6 736,263 + +0.9 736,263 + +0.0 736,263 + +0.2 736,264 - +0.8 736,484 + +0.2 736,484 + -0.1 736,484 + +0.2 736,485 - -0.4 736,485 - +2.1 736,485 - -0.8 736,485 - +0.1 736,485 - +0.4 736,485 - -0.9 736,500 + -0.9 736,500 + +0.3 736,501 - +0.4 736,561 - -0.1 736,561 - -0.2 736,691 - ABZR87_RS19465 0.12 +2.0 736,714 + ABZR87_RS19465 0.14 -0.1 736,715 - ABZR87_RS19465 0.14 -0.7 736,843 + ABZR87_RS19465 0.27 +0.5 736,843 + ABZR87_RS19465 0.27 +1.9 736,844 - ABZR87_RS19465 0.27 -1.1 737,192 - ABZR87_RS19465 0.63 +0.7 737,192 - ABZR87_RS19465 0.63 +0.2 737,326 + ABZR87_RS19465 0.76 +0.6 737,413 + ABZR87_RS19465 0.85 +0.5 737,462 - -0.9 737,512 + +1.3 737,512 + +1.0 737,513 - +0.4 737,513 - +0.1 737,554 + +1.3 737,554 + -0.1 737,554 + +0.7 737,554 + +0.4 737,555 - -1.6 737,555 - -0.2 737,555 - +0.3 737,615 + +0.2 737,616 - -0.4 737,616 - -0.7 737,631 + -0.1 737,632 - -0.9 737,660 + +0.4 737,660 + +0.8 737,660 + -0.7 737,660 + -0.1 737,660 + +0.1 737,660 + +0.7 737,661 - -0.6 737,693 + +1.1 737,693 + +1.5 737,694 - +0.1 737,694 - -0.5 737,694 - -1.7 737,694 - -0.0 737,694 - -1.0 737,694 - -1.7 737,694 - -1.5 737,906 + ABZR87_RS19470 0.18 +0.4 737,906 + ABZR87_RS19470 0.18 -0.3 737,906 + ABZR87_RS19470 0.18 +0.1 737,906 + ABZR87_RS19470 0.18 -1.3 737,906 + ABZR87_RS19470 0.18 -1.1 737,906 + ABZR87_RS19470 0.18 -0.9 738,016 + ABZR87_RS19470 0.28 +0.4 738,016 + ABZR87_RS19470 0.28 -0.2 738,016 + ABZR87_RS19470 0.28 -1.1 738,019 + ABZR87_RS19470 0.29 -0.5 738,020 - ABZR87_RS19470 0.29 -0.9 738,112 + ABZR87_RS19470 0.38 -0.7 738,112 + ABZR87_RS19470 0.38 -1.1 738,112 + ABZR87_RS19470 0.38 -1.7 738,112 + ABZR87_RS19470 0.38 -2.4 738,112 + ABZR87_RS19470 0.38 -0.7 738,112 + ABZR87_RS19470 0.38 -2.0 738,113 - ABZR87_RS19470 0.38 -1.3 738,113 - ABZR87_RS19470 0.38 +0.6 738,113 - ABZR87_RS19470 0.38 -0.1 738,113 - ABZR87_RS19470 0.38 -0.7 738,113 - ABZR87_RS19470 0.38 +1.4 738,127 - ABZR87_RS19470 0.39 -0.5 738,247 + ABZR87_RS19470 0.51 -0.1 738,247 + ABZR87_RS19470 0.51 +0.4 738,248 - ABZR87_RS19470 0.51 -1.1 738,256 + ABZR87_RS19470 0.52 -0.7 738,256 + ABZR87_RS19470 0.52 +0.5 738,257 - ABZR87_RS19470 0.52 +0.3 738,257 - ABZR87_RS19470 0.52 -0.8 738,257 - ABZR87_RS19470 0.52 -2.5 738,334 + ABZR87_RS19470 0.59 -2.1 738,334 + ABZR87_RS19470 0.59 +0.1 738,334 + ABZR87_RS19470 0.59 -2.2 738,334 + ABZR87_RS19470 0.59 +0.7 738,335 + ABZR87_RS19470 0.59 -1.2 738,335 - ABZR87_RS19470 0.59 -0.9 738,335 - ABZR87_RS19470 0.59 -1.7 738,335 - ABZR87_RS19470 0.59 -1.1 738,335 - ABZR87_RS19470 0.59 -2.4 738,424 + ABZR87_RS19470 0.68 -1.2 738,424 + ABZR87_RS19470 0.68 -0.9 738,424 + ABZR87_RS19470 0.68 -1.5 738,424 + ABZR87_RS19470 0.68 +0.8 738,425 - ABZR87_RS19470 0.68 -0.8 738,425 - ABZR87_RS19470 0.68 -0.9 738,425 - ABZR87_RS19470 0.68 -2.1 738,425 - ABZR87_RS19470 0.68 -1.0 738,553 + ABZR87_RS19470 0.81 -0.9
Or see this region's nucleotide sequence