Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17660

Experiment: no_plant_soil sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17655 and ABZR87_RS17660 overlap by 4 nucleotidesABZR87_RS17660 and ABZR87_RS17665 are separated by 144 nucleotidesABZR87_RS17665 and ABZR87_RS17670 overlap by 4 nucleotides ABZR87_RS17655: ABZR87_RS17655 - efflux RND transporter periplasmic adaptor subunit, at 326,016 to 327,131 _RS17655 ABZR87_RS17660: ABZR87_RS17660 - efflux RND transporter permease subunit, at 327,128 to 330,250 _RS17660 ABZR87_RS17665: ABZR87_RS17665 - PAS domain-containing protein, at 330,395 to 331,036 _RS17665 ABZR87_RS17670: ABZR87_RS17670 - threo-3-hydroxy-L-aspartate ammonia-lyase, at 331,033 to 332,010 _RS17670 Position (kb) 327 328 329 330 331Strain fitness (log2 ratio) -2 -1 0 1 2at 326.430 kb on + strand, within ABZR87_RS17655at 326.431 kb on - strand, within ABZR87_RS17655at 326.431 kb on - strand, within ABZR87_RS17655at 326.641 kb on + strand, within ABZR87_RS17655at 326.641 kb on + strand, within ABZR87_RS17655at 326.709 kb on + strand, within ABZR87_RS17655at 326.723 kb on - strand, within ABZR87_RS17655at 326.787 kb on + strand, within ABZR87_RS17655at 326.788 kb on - strand, within ABZR87_RS17655at 326.788 kb on - strand, within ABZR87_RS17655at 326.788 kb on - strand, within ABZR87_RS17655at 326.788 kb on - strand, within ABZR87_RS17655at 326.833 kb on + strand, within ABZR87_RS17655at 326.927 kb on - strand, within ABZR87_RS17655at 327.204 kb on + strandat 327.389 kb on + strandat 327.389 kb on + strandat 327.389 kb on + strandat 327.390 kb on - strandat 327.467 kb on + strand, within ABZR87_RS17660at 327.546 kb on - strand, within ABZR87_RS17660at 327.698 kb on + strand, within ABZR87_RS17660at 327.698 kb on + strand, within ABZR87_RS17660at 327.698 kb on + strand, within ABZR87_RS17660at 327.699 kb on - strand, within ABZR87_RS17660at 327.699 kb on - strand, within ABZR87_RS17660at 327.732 kb on + strand, within ABZR87_RS17660at 327.733 kb on - strand, within ABZR87_RS17660at 327.872 kb on - strand, within ABZR87_RS17660at 327.872 kb on - strand, within ABZR87_RS17660at 328.150 kb on + strand, within ABZR87_RS17660at 328.150 kb on + strand, within ABZR87_RS17660at 328.150 kb on + strand, within ABZR87_RS17660at 328.151 kb on - strand, within ABZR87_RS17660at 328.151 kb on - strand, within ABZR87_RS17660at 328.151 kb on - strand, within ABZR87_RS17660at 328.392 kb on - strand, within ABZR87_RS17660at 328.415 kb on + strand, within ABZR87_RS17660at 328.415 kb on + strand, within ABZR87_RS17660at 328.416 kb on - strand, within ABZR87_RS17660at 328.416 kb on - strand, within ABZR87_RS17660at 328.514 kb on + strand, within ABZR87_RS17660at 328.514 kb on + strand, within ABZR87_RS17660at 328.515 kb on - strand, within ABZR87_RS17660at 328.589 kb on + strand, within ABZR87_RS17660at 328.590 kb on - strand, within ABZR87_RS17660at 328.649 kb on + strand, within ABZR87_RS17660at 328.650 kb on - strand, within ABZR87_RS17660at 328.650 kb on - strand, within ABZR87_RS17660at 328.665 kb on - strand, within ABZR87_RS17660at 328.833 kb on - strand, within ABZR87_RS17660at 328.833 kb on - strand, within ABZR87_RS17660at 328.922 kb on + strand, within ABZR87_RS17660at 328.923 kb on - strand, within ABZR87_RS17660at 328.949 kb on + strand, within ABZR87_RS17660at 328.950 kb on - strand, within ABZR87_RS17660at 328.950 kb on - strand, within ABZR87_RS17660at 328.950 kb on - strand, within ABZR87_RS17660at 329.138 kb on + strand, within ABZR87_RS17660at 329.176 kb on + strand, within ABZR87_RS17660at 329.233 kb on + strand, within ABZR87_RS17660at 329.234 kb on - strand, within ABZR87_RS17660at 329.234 kb on - strand, within ABZR87_RS17660at 329.234 kb on - strand, within ABZR87_RS17660at 329.384 kb on - strand, within ABZR87_RS17660at 329.388 kb on + strand, within ABZR87_RS17660at 329.449 kb on + strand, within ABZR87_RS17660at 329.821 kb on + strand, within ABZR87_RS17660at 329.822 kb on - strand, within ABZR87_RS17660at 329.822 kb on - strand, within ABZR87_RS17660at 330.091 kb on + strandat 330.091 kb on + strandat 330.091 kb on + strandat 330.091 kb on + strandat 330.092 kb on - strandat 330.092 kb on - strandat 330.092 kb on - strandat 330.092 kb on - strandat 330.092 kb on - strandat 330.152 kb on + strandat 330.152 kb on + strandat 330.152 kb on + strandat 330.152 kb on + strandat 330.153 kb on - strandat 330.153 kb on - strandat 330.153 kb on - strandat 330.153 kb on - strandat 330.153 kb on - strandat 330.248 kb on + strandat 330.248 kb on + strandat 330.249 kb on - strandat 330.256 kb on + strandat 330.274 kb on - strandat 330.274 kb on - strandat 330.701 kb on + strand, within ABZR87_RS17665at 330.713 kb on - strand, within ABZR87_RS17665at 330.713 kb on - strand, within ABZR87_RS17665at 330.732 kb on + strand, within ABZR87_RS17665at 330.732 kb on + strand, within ABZR87_RS17665at 330.732 kb on + strand, within ABZR87_RS17665at 330.732 kb on + strand, within ABZR87_RS17665at 330.733 kb on - strand, within ABZR87_RS17665at 330.733 kb on - strand, within ABZR87_RS17665at 331.007 kb on + strandat 331.007 kb on + strandat 331.007 kb on + strandat 331.008 kb on - strandat 331.008 kb on - strandat 331.008 kb on - strandat 331.008 kb on - strandat 331.013 kb on + strandat 331.013 kb on + strandat 331.013 kb on + strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.051 kb on + strandat 331.207 kb on + strand, within ABZR87_RS17670at 331.207 kb on + strand, within ABZR87_RS17670at 331.207 kb on + strand, within ABZR87_RS17670at 331.207 kb on + strand, within ABZR87_RS17670at 331.208 kb on - strand, within ABZR87_RS17670at 331.208 kb on - strand, within ABZR87_RS17670

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 2; outgrowth in LB
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326,430 + ABZR87_RS17655 0.37 +0.2
326,431 - ABZR87_RS17655 0.37 -0.9
326,431 - ABZR87_RS17655 0.37 -0.0
326,641 + ABZR87_RS17655 0.56 -0.7
326,641 + ABZR87_RS17655 0.56 +0.2
326,709 + ABZR87_RS17655 0.62 +0.9
326,723 - ABZR87_RS17655 0.63 -0.9
326,787 + ABZR87_RS17655 0.69 +0.3
326,788 - ABZR87_RS17655 0.69 -0.9
326,788 - ABZR87_RS17655 0.69 -1.3
326,788 - ABZR87_RS17655 0.69 -0.5
326,788 - ABZR87_RS17655 0.69 +0.0
326,833 + ABZR87_RS17655 0.73 +0.6
326,927 - ABZR87_RS17655 0.82 -0.8
327,204 + +0.2
327,389 + +0.4
327,389 + +0.8
327,389 + +0.3
327,390 - +0.1
327,467 + ABZR87_RS17660 0.11 -0.1
327,546 - ABZR87_RS17660 0.13 +0.3
327,698 + ABZR87_RS17660 0.18 -0.1
327,698 + ABZR87_RS17660 0.18 +0.3
327,698 + ABZR87_RS17660 0.18 -1.5
327,699 - ABZR87_RS17660 0.18 +1.4
327,699 - ABZR87_RS17660 0.18 -0.5
327,732 + ABZR87_RS17660 0.19 -2.6
327,733 - ABZR87_RS17660 0.19 -0.5
327,872 - ABZR87_RS17660 0.24 -0.1
327,872 - ABZR87_RS17660 0.24 +0.4
328,150 + ABZR87_RS17660 0.33 +0.3
328,150 + ABZR87_RS17660 0.33 -0.1
328,150 + ABZR87_RS17660 0.33 -0.4
328,151 - ABZR87_RS17660 0.33 -0.2
328,151 - ABZR87_RS17660 0.33 -0.5
328,151 - ABZR87_RS17660 0.33 -0.1
328,392 - ABZR87_RS17660 0.40 -0.1
328,415 + ABZR87_RS17660 0.41 +0.0
328,415 + ABZR87_RS17660 0.41 -0.3
328,416 - ABZR87_RS17660 0.41 -0.2
328,416 - ABZR87_RS17660 0.41 +0.1
328,514 + ABZR87_RS17660 0.44 -1.6
328,514 + ABZR87_RS17660 0.44 +0.2
328,515 - ABZR87_RS17660 0.44 -0.2
328,589 + ABZR87_RS17660 0.47 +0.2
328,590 - ABZR87_RS17660 0.47 +0.1
328,649 + ABZR87_RS17660 0.49 -0.5
328,650 - ABZR87_RS17660 0.49 -1.8
328,650 - ABZR87_RS17660 0.49 +0.1
328,665 - ABZR87_RS17660 0.49 -0.7
328,833 - ABZR87_RS17660 0.55 +0.3
328,833 - ABZR87_RS17660 0.55 -0.2
328,922 + ABZR87_RS17660 0.57 -0.2
328,923 - ABZR87_RS17660 0.57 -0.3
328,949 + ABZR87_RS17660 0.58 +0.3
328,950 - ABZR87_RS17660 0.58 -0.4
328,950 - ABZR87_RS17660 0.58 +0.3
328,950 - ABZR87_RS17660 0.58 +0.2
329,138 + ABZR87_RS17660 0.64 -0.9
329,176 + ABZR87_RS17660 0.66 +2.1
329,233 + ABZR87_RS17660 0.67 -0.5
329,234 - ABZR87_RS17660 0.67 -0.7
329,234 - ABZR87_RS17660 0.67 +0.3
329,234 - ABZR87_RS17660 0.67 +0.1
329,384 - ABZR87_RS17660 0.72 +0.8
329,388 + ABZR87_RS17660 0.72 +0.2
329,449 + ABZR87_RS17660 0.74 -0.5
329,821 + ABZR87_RS17660 0.86 +0.4
329,822 - ABZR87_RS17660 0.86 -0.6
329,822 - ABZR87_RS17660 0.86 -0.9
330,091 + +0.4
330,091 + +0.6
330,091 + +0.1
330,091 + -1.3
330,092 - +0.9
330,092 - -1.4
330,092 - -0.3
330,092 - +0.6
330,092 - -0.7
330,152 + -0.2
330,152 + +0.4
330,152 + -0.6
330,152 + -0.3
330,153 - -0.0
330,153 - +0.3
330,153 - +0.9
330,153 - +1.2
330,153 - -0.3
330,248 + +0.0
330,248 + +0.5
330,249 - -0.0
330,256 + +0.4
330,274 - -0.3
330,274 - +0.1
330,701 + ABZR87_RS17665 0.48 +0.3
330,713 - ABZR87_RS17665 0.50 +0.5
330,713 - ABZR87_RS17665 0.50 +0.2
330,732 + ABZR87_RS17665 0.52 -0.3
330,732 + ABZR87_RS17665 0.52 +1.4
330,732 + ABZR87_RS17665 0.52 +0.4
330,732 + ABZR87_RS17665 0.52 -0.0
330,733 - ABZR87_RS17665 0.53 +0.8
330,733 - ABZR87_RS17665 0.53 -1.5
331,007 + +0.1
331,007 + +0.8
331,007 + -0.8
331,008 - +0.3
331,008 - -0.8
331,008 - -1.5
331,008 - +0.3
331,013 + +0.4
331,013 + +1.9
331,013 + -0.3
331,014 - -2.5
331,014 - +0.1
331,014 - +0.3
331,014 - -0.6
331,051 + +0.3
331,207 + ABZR87_RS17670 0.18 +0.1
331,207 + ABZR87_RS17670 0.18 +0.6
331,207 + ABZR87_RS17670 0.18 +0.3
331,207 + ABZR87_RS17670 0.18 -1.0
331,208 - ABZR87_RS17670 0.18 -0.6
331,208 - ABZR87_RS17670 0.18 -0.8

Or see this region's nucleotide sequence