Experiment: no_plant_soil sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16855 and ABZR87_RS16860 overlap by 8 nucleotides ABZR87_RS16860 and ABZR87_RS16865 are separated by 33 nucleotides ABZR87_RS16865 and ABZR87_RS16870 are separated by 260 nucleotides
ABZR87_RS16855: ABZR87_RS16855 - chemotaxis protein CheC, at 136,476 to 137,087
_RS16855
ABZR87_RS16860: ABZR87_RS16860 - response regulator, at 137,080 to 137,448
_RS16860
ABZR87_RS16865: ABZR87_RS16865 - ATP-binding protein, at 137,482 to 138,867
_RS16865
ABZR87_RS16870: ABZR87_RS16870 - EAL domain-containing protein, at 139,128 to 140,366
_RS16870
Position (kb) 137
138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 136.605 kb on + strand, within ABZR87_RS16855 at 136.605 kb on + strand, within ABZR87_RS16855 at 136.716 kb on - strand, within ABZR87_RS16855 at 136.716 kb on - strand, within ABZR87_RS16855 at 136.716 kb on - strand, within ABZR87_RS16855 at 136.793 kb on - strand, within ABZR87_RS16855 at 136.793 kb on - strand, within ABZR87_RS16855 at 136.793 kb on - strand, within ABZR87_RS16855 at 137.087 kb on + strand at 137.087 kb on + strand at 137.087 kb on + strand at 137.087 kb on + strand at 137.088 kb on - strand at 137.088 kb on - strand at 137.088 kb on - strand at 137.096 kb on + strand at 137.097 kb on - strand at 137.244 kb on + strand, within ABZR87_RS16860 at 137.244 kb on + strand, within ABZR87_RS16860 at 137.245 kb on - strand, within ABZR87_RS16860 at 137.468 kb on + strand at 137.469 kb on - strand at 137.472 kb on + strand at 137.472 kb on + strand at 137.473 kb on - strand at 137.473 kb on - strand at 137.473 kb on - strand at 137.552 kb on - strand at 137.552 kb on - strand at 137.627 kb on + strand, within ABZR87_RS16865 at 137.627 kb on + strand, within ABZR87_RS16865 at 137.627 kb on + strand, within ABZR87_RS16865 at 137.627 kb on + strand, within ABZR87_RS16865 at 137.627 kb on + strand, within ABZR87_RS16865 at 137.676 kb on + strand, within ABZR87_RS16865 at 137.676 kb on + strand, within ABZR87_RS16865 at 137.676 kb on + strand, within ABZR87_RS16865 at 137.677 kb on - strand, within ABZR87_RS16865 at 137.677 kb on - strand, within ABZR87_RS16865 at 137.677 kb on - strand, within ABZR87_RS16865 at 137.717 kb on - strand, within ABZR87_RS16865 at 137.717 kb on - strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.832 kb on - strand, within ABZR87_RS16865 at 137.832 kb on - strand, within ABZR87_RS16865 at 137.832 kb on - strand, within ABZR87_RS16865 at 137.832 kb on - strand, within ABZR87_RS16865 at 137.889 kb on + strand, within ABZR87_RS16865 at 137.889 kb on + strand, within ABZR87_RS16865 at 137.889 kb on + strand, within ABZR87_RS16865 at 137.890 kb on - strand, within ABZR87_RS16865 at 137.890 kb on - strand, within ABZR87_RS16865 at 137.890 kb on - strand, within ABZR87_RS16865 at 137.915 kb on + strand, within ABZR87_RS16865 at 137.916 kb on - strand, within ABZR87_RS16865 at 137.939 kb on + strand, within ABZR87_RS16865 at 137.940 kb on - strand, within ABZR87_RS16865 at 137.940 kb on - strand, within ABZR87_RS16865 at 138.023 kb on - strand, within ABZR87_RS16865 at 138.023 kb on - strand, within ABZR87_RS16865 at 138.091 kb on + strand, within ABZR87_RS16865 at 138.209 kb on + strand, within ABZR87_RS16865 at 138.209 kb on + strand, within ABZR87_RS16865 at 138.210 kb on - strand, within ABZR87_RS16865 at 138.230 kb on + strand, within ABZR87_RS16865 at 138.230 kb on + strand, within ABZR87_RS16865 at 138.230 kb on + strand, within ABZR87_RS16865 at 138.231 kb on - strand, within ABZR87_RS16865 at 138.231 kb on - strand, within ABZR87_RS16865 at 138.231 kb on - strand, within ABZR87_RS16865 at 138.455 kb on + strand, within ABZR87_RS16865 at 138.456 kb on - strand, within ABZR87_RS16865 at 138.489 kb on + strand, within ABZR87_RS16865 at 138.489 kb on + strand, within ABZR87_RS16865 at 138.489 kb on + strand, within ABZR87_RS16865 at 138.489 kb on + strand, within ABZR87_RS16865 at 138.490 kb on - strand, within ABZR87_RS16865 at 138.585 kb on + strand, within ABZR87_RS16865 at 138.605 kb on + strand, within ABZR87_RS16865 at 138.605 kb on + strand, within ABZR87_RS16865 at 138.605 kb on + strand, within ABZR87_RS16865 at 138.606 kb on - strand, within ABZR87_RS16865 at 138.606 kb on - strand, within ABZR87_RS16865 at 138.606 kb on - strand, within ABZR87_RS16865 at 138.629 kb on + strand, within ABZR87_RS16865 at 138.629 kb on + strand, within ABZR87_RS16865 at 138.630 kb on - strand, within ABZR87_RS16865 at 138.711 kb on + strand, within ABZR87_RS16865 at 138.711 kb on + strand, within ABZR87_RS16865 at 138.711 kb on + strand, within ABZR87_RS16865 at 138.711 kb on + strand, within ABZR87_RS16865 at 138.711 kb on + strand, within ABZR87_RS16865 at 138.712 kb on - strand, within ABZR87_RS16865 at 138.712 kb on - strand, within ABZR87_RS16865 at 138.753 kb on - strand at 138.841 kb on + strand at 138.842 kb on - strand at 138.855 kb on + strand at 138.855 kb on + strand at 138.855 kb on + strand at 138.855 kb on + strand at 138.897 kb on + strand at 138.931 kb on + strand at 138.932 kb on - strand at 138.933 kb on + strand at 138.933 kb on + strand at 138.933 kb on + strand at 138.933 kb on + strand at 138.933 kb on + strand at 138.933 kb on + strand at 138.933 kb on + strand at 138.933 kb on + strand at 138.933 kb on + strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.934 kb on - strand at 138.937 kb on + strand at 138.938 kb on - strand at 138.938 kb on - strand at 138.963 kb on + strand at 138.963 kb on + strand at 138.964 kb on - strand at 138.999 kb on + strand at 138.999 kb on + strand at 138.999 kb on + strand at 139.000 kb on - strand at 139.002 kb on + strand at 139.050 kb on + strand at 139.068 kb on - strand at 139.090 kb on - strand at 139.092 kb on + strand at 139.092 kb on + strand at 139.275 kb on + strand, within ABZR87_RS16870 at 139.275 kb on + strand, within ABZR87_RS16870 at 139.275 kb on + strand, within ABZR87_RS16870 at 139.348 kb on + strand, within ABZR87_RS16870 at 139.448 kb on + strand, within ABZR87_RS16870 at 139.448 kb on + strand, within ABZR87_RS16870 at 139.448 kb on + strand, within ABZR87_RS16870 at 139.448 kb on + strand, within ABZR87_RS16870 at 139.448 kb on + strand, within ABZR87_RS16870 at 139.448 kb on + strand, within ABZR87_RS16870 at 139.448 kb on + strand, within ABZR87_RS16870 at 139.448 kb on + strand, within ABZR87_RS16870 at 139.448 kb on + strand, within ABZR87_RS16870 at 139.449 kb on - strand, within ABZR87_RS16870 at 139.449 kb on - strand, within ABZR87_RS16870 at 139.449 kb on - strand, within ABZR87_RS16870 at 139.449 kb on - strand, within ABZR87_RS16870 at 139.449 kb on - strand, within ABZR87_RS16870 at 139.641 kb on - strand, within ABZR87_RS16870 at 139.641 kb on - strand, within ABZR87_RS16870 at 139.641 kb on - strand, within ABZR87_RS16870 at 139.641 kb on - strand, within ABZR87_RS16870 at 139.684 kb on + strand, within ABZR87_RS16870 at 139.761 kb on + strand, within ABZR87_RS16870 at 139.761 kb on + strand, within ABZR87_RS16870 at 139.761 kb on + strand, within ABZR87_RS16870 at 139.761 kb on + strand, within ABZR87_RS16870 at 139.761 kb on + strand, within ABZR87_RS16870 at 139.762 kb on - strand, within ABZR87_RS16870 at 139.762 kb on - strand, within ABZR87_RS16870 at 139.863 kb on + strand, within ABZR87_RS16870 at 139.863 kb on + strand, within ABZR87_RS16870 at 139.863 kb on + strand, within ABZR87_RS16870 at 139.863 kb on + strand, within ABZR87_RS16870 at 139.864 kb on - strand, within ABZR87_RS16870 at 139.864 kb on - strand, within ABZR87_RS16870 at 139.864 kb on - strand, within ABZR87_RS16870 at 139.864 kb on - strand, within ABZR87_RS16870 at 139.864 kb on - strand, within ABZR87_RS16870 at 139.864 kb on - strand, within ABZR87_RS16870 at 139.864 kb on - strand, within ABZR87_RS16870
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 2; outgrowth in LB remove 136,605 + ABZR87_RS16855 0.21 +0.2 136,605 + ABZR87_RS16855 0.21 +2.9 136,716 - ABZR87_RS16855 0.39 -2.2 136,716 - ABZR87_RS16855 0.39 -1.1 136,716 - ABZR87_RS16855 0.39 -0.3 136,793 - ABZR87_RS16855 0.52 -2.0 136,793 - ABZR87_RS16855 0.52 +0.5 136,793 - ABZR87_RS16855 0.52 +0.9 137,087 + -1.2 137,087 + +0.9 137,087 + +0.0 137,087 + -0.0 137,088 - +0.5 137,088 - -0.2 137,088 - +0.6 137,096 + -0.3 137,097 - -0.0 137,244 + ABZR87_RS16860 0.44 -0.2 137,244 + ABZR87_RS16860 0.44 -2.0 137,245 - ABZR87_RS16860 0.45 +0.2 137,468 + -0.7 137,469 - -3.4 137,472 + +0.1 137,472 + +0.6 137,473 - +0.2 137,473 - -0.1 137,473 - +0.3 137,552 - -0.0 137,552 - -0.6 137,627 + ABZR87_RS16865 0.10 +0.7 137,627 + ABZR87_RS16865 0.10 +0.4 137,627 + ABZR87_RS16865 0.10 +0.1 137,627 + ABZR87_RS16865 0.10 +0.3 137,627 + ABZR87_RS16865 0.10 -0.7 137,676 + ABZR87_RS16865 0.14 -0.1 137,676 + ABZR87_RS16865 0.14 +0.6 137,676 + ABZR87_RS16865 0.14 +0.6 137,677 - ABZR87_RS16865 0.14 -0.5 137,677 - ABZR87_RS16865 0.14 -0.1 137,677 - ABZR87_RS16865 0.14 -0.4 137,717 - ABZR87_RS16865 0.17 -2.0 137,717 - ABZR87_RS16865 0.17 +0.3 137,831 + ABZR87_RS16865 0.25 +1.5 137,831 + ABZR87_RS16865 0.25 +0.2 137,831 + ABZR87_RS16865 0.25 -0.3 137,831 + ABZR87_RS16865 0.25 -0.0 137,831 + ABZR87_RS16865 0.25 -0.5 137,831 + ABZR87_RS16865 0.25 +1.0 137,831 + ABZR87_RS16865 0.25 -0.0 137,831 + ABZR87_RS16865 0.25 +0.1 137,831 + ABZR87_RS16865 0.25 +0.2 137,832 - ABZR87_RS16865 0.25 -1.0 137,832 - ABZR87_RS16865 0.25 +1.0 137,832 - ABZR87_RS16865 0.25 +0.5 137,832 - ABZR87_RS16865 0.25 -0.6 137,889 + ABZR87_RS16865 0.29 +1.6 137,889 + ABZR87_RS16865 0.29 +0.1 137,889 + ABZR87_RS16865 0.29 +0.3 137,890 - ABZR87_RS16865 0.29 -0.5 137,890 - ABZR87_RS16865 0.29 -0.2 137,890 - ABZR87_RS16865 0.29 -0.9 137,915 + ABZR87_RS16865 0.31 +0.0 137,916 - ABZR87_RS16865 0.31 -0.2 137,939 + ABZR87_RS16865 0.33 +0.3 137,940 - ABZR87_RS16865 0.33 -0.4 137,940 - ABZR87_RS16865 0.33 -0.4 138,023 - ABZR87_RS16865 0.39 +0.9 138,023 - ABZR87_RS16865 0.39 +0.7 138,091 + ABZR87_RS16865 0.44 -0.1 138,209 + ABZR87_RS16865 0.52 +0.0 138,209 + ABZR87_RS16865 0.52 +0.0 138,210 - ABZR87_RS16865 0.53 +0.5 138,230 + ABZR87_RS16865 0.54 +0.8 138,230 + ABZR87_RS16865 0.54 +0.6 138,230 + ABZR87_RS16865 0.54 +0.5 138,231 - ABZR87_RS16865 0.54 +0.9 138,231 - ABZR87_RS16865 0.54 +0.1 138,231 - ABZR87_RS16865 0.54 -3.1 138,455 + ABZR87_RS16865 0.70 +0.4 138,456 - ABZR87_RS16865 0.70 -0.1 138,489 + ABZR87_RS16865 0.73 +0.1 138,489 + ABZR87_RS16865 0.73 -0.1 138,489 + ABZR87_RS16865 0.73 -0.6 138,489 + ABZR87_RS16865 0.73 +0.0 138,490 - ABZR87_RS16865 0.73 -1.1 138,585 + ABZR87_RS16865 0.80 +0.7 138,605 + ABZR87_RS16865 0.81 +0.0 138,605 + ABZR87_RS16865 0.81 +0.6 138,605 + ABZR87_RS16865 0.81 +0.6 138,606 - ABZR87_RS16865 0.81 +0.6 138,606 - ABZR87_RS16865 0.81 -0.5 138,606 - ABZR87_RS16865 0.81 +0.8 138,629 + ABZR87_RS16865 0.83 -1.3 138,629 + ABZR87_RS16865 0.83 +0.3 138,630 - ABZR87_RS16865 0.83 +0.6 138,711 + ABZR87_RS16865 0.89 +0.4 138,711 + ABZR87_RS16865 0.89 -0.3 138,711 + ABZR87_RS16865 0.89 +0.1 138,711 + ABZR87_RS16865 0.89 -0.3 138,711 + ABZR87_RS16865 0.89 +0.0 138,712 - ABZR87_RS16865 0.89 -0.3 138,712 - ABZR87_RS16865 0.89 +0.2 138,753 - +0.6 138,841 + +0.8 138,842 - +0.6 138,855 + +0.7 138,855 + -0.1 138,855 + -0.1 138,855 + -0.2 138,897 + +0.2 138,931 + +0.7 138,932 - -0.1 138,933 + +0.2 138,933 + +6.0 138,933 + +0.9 138,933 + +1.3 138,933 + +0.4 138,933 + +0.6 138,933 + +0.5 138,933 + +0.2 138,933 + +0.8 138,934 - -0.8 138,934 - -0.2 138,934 - -0.3 138,934 - -0.1 138,934 - -0.0 138,934 - +1.3 138,934 - +0.0 138,934 - +0.3 138,934 - +0.4 138,934 - +1.1 138,934 - -0.0 138,934 - -0.2 138,934 - +0.5 138,934 - +0.4 138,934 - +0.0 138,934 - +0.3 138,934 - -0.2 138,934 - +0.3 138,937 + +1.9 138,938 - -0.6 138,938 - -1.2 138,963 + +0.9 138,963 + -0.1 138,964 - -0.1 138,999 + +0.3 138,999 + +0.3 138,999 + +0.9 139,000 - -0.2 139,002 + +0.6 139,050 + +1.7 139,068 - -0.2 139,090 - -0.1 139,092 + +1.1 139,092 + +0.8 139,275 + ABZR87_RS16870 0.12 -0.4 139,275 + ABZR87_RS16870 0.12 +1.0 139,275 + ABZR87_RS16870 0.12 -0.2 139,348 + ABZR87_RS16870 0.18 -0.6 139,448 + ABZR87_RS16870 0.26 -0.7 139,448 + ABZR87_RS16870 0.26 -0.6 139,448 + ABZR87_RS16870 0.26 -0.5 139,448 + ABZR87_RS16870 0.26 -0.1 139,448 + ABZR87_RS16870 0.26 +0.6 139,448 + ABZR87_RS16870 0.26 +0.1 139,448 + ABZR87_RS16870 0.26 +0.2 139,448 + ABZR87_RS16870 0.26 +0.2 139,448 + ABZR87_RS16870 0.26 -0.5 139,449 - ABZR87_RS16870 0.26 +0.4 139,449 - ABZR87_RS16870 0.26 +0.8 139,449 - ABZR87_RS16870 0.26 -0.3 139,449 - ABZR87_RS16870 0.26 -0.6 139,449 - ABZR87_RS16870 0.26 -0.1 139,641 - ABZR87_RS16870 0.41 +0.0 139,641 - ABZR87_RS16870 0.41 +0.1 139,641 - ABZR87_RS16870 0.41 -0.4 139,641 - ABZR87_RS16870 0.41 +0.5 139,684 + ABZR87_RS16870 0.45 -0.2 139,761 + ABZR87_RS16870 0.51 -0.4 139,761 + ABZR87_RS16870 0.51 +0.7 139,761 + ABZR87_RS16870 0.51 -1.4 139,761 + ABZR87_RS16870 0.51 +0.1 139,761 + ABZR87_RS16870 0.51 +0.8 139,762 - ABZR87_RS16870 0.51 -0.3 139,762 - ABZR87_RS16870 0.51 -0.2 139,863 + ABZR87_RS16870 0.59 -0.0 139,863 + ABZR87_RS16870 0.59 +0.2 139,863 + ABZR87_RS16870 0.59 -0.4 139,863 + ABZR87_RS16870 0.59 -1.2 139,864 - ABZR87_RS16870 0.59 -1.1 139,864 - ABZR87_RS16870 0.59 -0.9 139,864 - ABZR87_RS16870 0.59 +0.4 139,864 - ABZR87_RS16870 0.59 -1.7 139,864 - ABZR87_RS16870 0.59 -1.4 139,864 - ABZR87_RS16870 0.59 +1.3 139,864 - ABZR87_RS16870 0.59 -0.7
Or see this region's nucleotide sequence