Experiment: no_plant_soil sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16285 and ABZR87_RS16290 are separated by 267 nucleotides ABZR87_RS16290 and ABZR87_RS16295 are separated by 291 nucleotides
ABZR87_RS16285: ABZR87_RS16285 - hypothetical protein, at 3,769 to 4,587
_RS16285
ABZR87_RS16290: ABZR87_RS16290 - UTP--glucose-1-phosphate uridylyltransferase GalU, at 4,855 to 5,805
_RS16290
ABZR87_RS16295: ABZR87_RS16295 - MFS transporter, at 6,097 to 7,437
_RS16295
Position (kb) 4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3.916 kb on + strand, within ABZR87_RS16285 at 3.916 kb on + strand, within ABZR87_RS16285 at 3.917 kb on - strand, within ABZR87_RS16285 at 3.931 kb on + strand, within ABZR87_RS16285 at 3.931 kb on + strand, within ABZR87_RS16285 at 3.931 kb on + strand, within ABZR87_RS16285 at 3.931 kb on + strand, within ABZR87_RS16285 at 3.931 kb on + strand, within ABZR87_RS16285 at 3.931 kb on + strand, within ABZR87_RS16285 at 3.931 kb on + strand, within ABZR87_RS16285 at 3.932 kb on - strand, within ABZR87_RS16285 at 3.932 kb on - strand, within ABZR87_RS16285 at 3.932 kb on - strand, within ABZR87_RS16285 at 3.959 kb on + strand, within ABZR87_RS16285 at 3.978 kb on + strand, within ABZR87_RS16285 at 3.978 kb on + strand, within ABZR87_RS16285 at 3.978 kb on + strand, within ABZR87_RS16285 at 3.979 kb on - strand, within ABZR87_RS16285 at 4.032 kb on + strand, within ABZR87_RS16285 at 4.033 kb on - strand, within ABZR87_RS16285 at 4.116 kb on + strand, within ABZR87_RS16285 at 4.116 kb on + strand, within ABZR87_RS16285 at 4.116 kb on + strand, within ABZR87_RS16285 at 4.116 kb on + strand, within ABZR87_RS16285 at 4.116 kb on + strand, within ABZR87_RS16285 at 4.117 kb on - strand, within ABZR87_RS16285 at 4.117 kb on - strand, within ABZR87_RS16285 at 4.117 kb on - strand, within ABZR87_RS16285 at 4.117 kb on - strand, within ABZR87_RS16285 at 4.525 kb on + strand at 4.526 kb on - strand at 4.605 kb on - strand at 4.615 kb on + strand at 4.616 kb on - strand at 4.636 kb on + strand at 4.636 kb on + strand at 4.665 kb on + strand at 4.720 kb on + strand at 4.720 kb on + strand at 4.720 kb on + strand at 4.720 kb on + strand at 4.720 kb on + strand at 4.720 kb on + strand at 4.721 kb on - strand at 4.746 kb on + strand at 4.746 kb on + strand at 4.746 kb on + strand at 4.746 kb on + strand at 4.746 kb on + strand at 4.746 kb on + strand at 4.746 kb on + strand at 4.747 kb on - strand at 4.747 kb on - strand at 4.747 kb on - strand at 4.747 kb on - strand at 4.747 kb on - strand at 4.747 kb on - strand at 4.747 kb on - strand at 4.813 kb on + strand at 4.813 kb on + strand at 4.813 kb on + strand at 4.813 kb on + strand at 4.813 kb on + strand at 4.814 kb on - strand at 4.832 kb on + strand at 4.833 kb on - strand at 4.833 kb on - strand at 4.960 kb on - strand, within ABZR87_RS16290 at 4.976 kb on - strand, within ABZR87_RS16290 at 5.004 kb on + strand, within ABZR87_RS16290 at 5.005 kb on - strand, within ABZR87_RS16290 at 5.072 kb on - strand, within ABZR87_RS16290 at 5.072 kb on - strand, within ABZR87_RS16290 at 5.072 kb on - strand, within ABZR87_RS16290 at 5.072 kb on - strand, within ABZR87_RS16290 at 5.072 kb on - strand, within ABZR87_RS16290 at 5.072 kb on - strand, within ABZR87_RS16290 at 5.161 kb on + strand, within ABZR87_RS16290 at 5.161 kb on + strand, within ABZR87_RS16290 at 5.161 kb on + strand, within ABZR87_RS16290 at 5.161 kb on + strand, within ABZR87_RS16290 at 5.161 kb on + strand, within ABZR87_RS16290 at 5.161 kb on + strand, within ABZR87_RS16290 at 5.161 kb on + strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.162 kb on - strand, within ABZR87_RS16290 at 5.222 kb on + strand, within ABZR87_RS16290 at 5.223 kb on - strand, within ABZR87_RS16290 at 5.305 kb on + strand, within ABZR87_RS16290 at 5.305 kb on + strand, within ABZR87_RS16290 at 5.305 kb on + strand, within ABZR87_RS16290 at 5.306 kb on - strand, within ABZR87_RS16290 at 5.306 kb on - strand, within ABZR87_RS16290 at 5.306 kb on - strand, within ABZR87_RS16290 at 5.306 kb on - strand, within ABZR87_RS16290 at 5.306 kb on - strand, within ABZR87_RS16290 at 5.315 kb on - strand, within ABZR87_RS16290 at 5.480 kb on - strand, within ABZR87_RS16290 at 5.597 kb on - strand, within ABZR87_RS16290 at 5.642 kb on - strand, within ABZR87_RS16290 at 5.704 kb on + strand, within ABZR87_RS16290 at 5.704 kb on + strand, within ABZR87_RS16290 at 5.704 kb on + strand, within ABZR87_RS16290 at 5.704 kb on + strand, within ABZR87_RS16290 at 5.705 kb on - strand, within ABZR87_RS16290 at 5.705 kb on - strand, within ABZR87_RS16290 at 5.705 kb on - strand, within ABZR87_RS16290 at 5.705 kb on - strand, within ABZR87_RS16290 at 5.705 kb on - strand, within ABZR87_RS16290 at 5.809 kb on + strand at 5.809 kb on + strand at 5.810 kb on - strand at 5.984 kb on + strand at 5.989 kb on + strand at 5.989 kb on + strand at 5.989 kb on + strand at 5.990 kb on - strand at 5.990 kb on - strand at 6.005 kb on + strand at 6.232 kb on + strand, within ABZR87_RS16295 at 6.232 kb on + strand, within ABZR87_RS16295 at 6.232 kb on + strand, within ABZR87_RS16295 at 6.233 kb on - strand, within ABZR87_RS16295 at 6.241 kb on + strand, within ABZR87_RS16295 at 6.241 kb on + strand, within ABZR87_RS16295 at 6.241 kb on + strand, within ABZR87_RS16295 at 6.241 kb on + strand, within ABZR87_RS16295 at 6.242 kb on - strand, within ABZR87_RS16295 at 6.242 kb on - strand, within ABZR87_RS16295 at 6.242 kb on - strand, within ABZR87_RS16295 at 6.242 kb on - strand, within ABZR87_RS16295 at 6.242 kb on - strand, within ABZR87_RS16295 at 6.247 kb on + strand, within ABZR87_RS16295 at 6.248 kb on - strand, within ABZR87_RS16295 at 6.248 kb on - strand, within ABZR87_RS16295 at 6.248 kb on - strand, within ABZR87_RS16295 at 6.265 kb on + strand, within ABZR87_RS16295 at 6.265 kb on + strand, within ABZR87_RS16295 at 6.265 kb on + strand, within ABZR87_RS16295 at 6.266 kb on - strand, within ABZR87_RS16295 at 6.266 kb on - strand, within ABZR87_RS16295 at 6.266 kb on - strand, within ABZR87_RS16295 at 6.266 kb on - strand, within ABZR87_RS16295 at 6.382 kb on + strand, within ABZR87_RS16295 at 6.383 kb on - strand, within ABZR87_RS16295 at 6.383 kb on - strand, within ABZR87_RS16295 at 6.383 kb on - strand, within ABZR87_RS16295 at 6.383 kb on - strand, within ABZR87_RS16295 at 6.425 kb on + strand, within ABZR87_RS16295 at 6.472 kb on + strand, within ABZR87_RS16295 at 6.472 kb on + strand, within ABZR87_RS16295 at 6.472 kb on + strand, within ABZR87_RS16295 at 6.472 kb on + strand, within ABZR87_RS16295 at 6.473 kb on - strand, within ABZR87_RS16295 at 6.473 kb on - strand, within ABZR87_RS16295 at 6.473 kb on - strand, within ABZR87_RS16295 at 6.473 kb on - strand, within ABZR87_RS16295 at 6.551 kb on - strand, within ABZR87_RS16295 at 6.568 kb on + strand, within ABZR87_RS16295 at 6.568 kb on + strand, within ABZR87_RS16295 at 6.568 kb on + strand, within ABZR87_RS16295 at 6.568 kb on + strand, within ABZR87_RS16295 at 6.568 kb on + strand, within ABZR87_RS16295 at 6.569 kb on - strand, within ABZR87_RS16295 at 6.569 kb on - strand, within ABZR87_RS16295 at 6.607 kb on + strand, within ABZR87_RS16295 at 6.607 kb on + strand, within ABZR87_RS16295 at 6.608 kb on - strand, within ABZR87_RS16295 at 6.622 kb on + strand, within ABZR87_RS16295 at 6.622 kb on + strand, within ABZR87_RS16295 at 6.622 kb on + strand, within ABZR87_RS16295 at 6.623 kb on - strand, within ABZR87_RS16295
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 2; outgrowth in LB remove 3,916 + ABZR87_RS16285 0.18 +0.0 3,916 + ABZR87_RS16285 0.18 -0.8 3,917 - ABZR87_RS16285 0.18 -0.7 3,931 + ABZR87_RS16285 0.20 -1.2 3,931 + ABZR87_RS16285 0.20 -0.3 3,931 + ABZR87_RS16285 0.20 +0.5 3,931 + ABZR87_RS16285 0.20 -1.0 3,931 + ABZR87_RS16285 0.20 -0.4 3,931 + ABZR87_RS16285 0.20 -1.4 3,931 + ABZR87_RS16285 0.20 +0.1 3,932 - ABZR87_RS16285 0.20 -0.4 3,932 - ABZR87_RS16285 0.20 -1.3 3,932 - ABZR87_RS16285 0.20 -1.1 3,959 + ABZR87_RS16285 0.23 -0.2 3,978 + ABZR87_RS16285 0.26 -0.5 3,978 + ABZR87_RS16285 0.26 -0.4 3,978 + ABZR87_RS16285 0.26 -1.2 3,979 - ABZR87_RS16285 0.26 -1.4 4,032 + ABZR87_RS16285 0.32 +0.2 4,033 - ABZR87_RS16285 0.32 -0.8 4,116 + ABZR87_RS16285 0.42 -1.4 4,116 + ABZR87_RS16285 0.42 -0.4 4,116 + ABZR87_RS16285 0.42 -0.8 4,116 + ABZR87_RS16285 0.42 +1.6 4,116 + ABZR87_RS16285 0.42 +0.6 4,117 - ABZR87_RS16285 0.42 -0.5 4,117 - ABZR87_RS16285 0.42 -0.9 4,117 - ABZR87_RS16285 0.42 -0.0 4,117 - ABZR87_RS16285 0.42 -0.8 4,525 + +0.4 4,526 - -1.0 4,605 - +0.1 4,615 + +0.0 4,616 - -3.3 4,636 + +0.1 4,636 + +0.7 4,665 + -0.0 4,720 + -0.2 4,720 + -0.9 4,720 + -0.8 4,720 + +0.2 4,720 + -0.5 4,720 + -0.3 4,721 - -0.2 4,746 + -0.9 4,746 + -0.5 4,746 + +1.2 4,746 + -0.2 4,746 + +0.2 4,746 + +0.6 4,746 + +1.4 4,747 - -0.4 4,747 - +0.7 4,747 - +0.1 4,747 - -0.5 4,747 - +0.1 4,747 - -0.5 4,747 - -0.8 4,813 + -0.1 4,813 + -0.0 4,813 + +0.3 4,813 + -1.0 4,813 + -0.7 4,814 - +0.8 4,832 + -0.2 4,833 - +0.4 4,833 - +1.4 4,960 - ABZR87_RS16290 0.11 +0.3 4,976 - ABZR87_RS16290 0.13 -0.5 5,004 + ABZR87_RS16290 0.16 +0.4 5,005 - ABZR87_RS16290 0.16 -0.0 5,072 - ABZR87_RS16290 0.23 -0.2 5,072 - ABZR87_RS16290 0.23 +0.9 5,072 - ABZR87_RS16290 0.23 +1.4 5,072 - ABZR87_RS16290 0.23 -0.8 5,072 - ABZR87_RS16290 0.23 +1.6 5,072 - ABZR87_RS16290 0.23 -0.7 5,161 + ABZR87_RS16290 0.32 +0.2 5,161 + ABZR87_RS16290 0.32 +0.2 5,161 + ABZR87_RS16290 0.32 -2.3 5,161 + ABZR87_RS16290 0.32 +0.6 5,161 + ABZR87_RS16290 0.32 +0.2 5,161 + ABZR87_RS16290 0.32 +0.1 5,161 + ABZR87_RS16290 0.32 -0.2 5,162 - ABZR87_RS16290 0.32 -0.4 5,162 - ABZR87_RS16290 0.32 +0.1 5,162 - ABZR87_RS16290 0.32 +0.2 5,162 - ABZR87_RS16290 0.32 -0.1 5,162 - ABZR87_RS16290 0.32 +0.5 5,162 - ABZR87_RS16290 0.32 +0.5 5,162 - ABZR87_RS16290 0.32 -0.0 5,162 - ABZR87_RS16290 0.32 +0.4 5,222 + ABZR87_RS16290 0.39 +0.1 5,223 - ABZR87_RS16290 0.39 +1.0 5,305 + ABZR87_RS16290 0.47 -0.3 5,305 + ABZR87_RS16290 0.47 +0.3 5,305 + ABZR87_RS16290 0.47 +0.3 5,306 - ABZR87_RS16290 0.47 -0.4 5,306 - ABZR87_RS16290 0.47 +0.3 5,306 - ABZR87_RS16290 0.47 +0.3 5,306 - ABZR87_RS16290 0.47 -1.1 5,306 - ABZR87_RS16290 0.47 +0.4 5,315 - ABZR87_RS16290 0.48 -1.3 5,480 - ABZR87_RS16290 0.66 +0.0 5,597 - ABZR87_RS16290 0.78 +0.3 5,642 - ABZR87_RS16290 0.83 -0.0 5,704 + ABZR87_RS16290 0.89 +0.2 5,704 + ABZR87_RS16290 0.89 +0.3 5,704 + ABZR87_RS16290 0.89 -0.1 5,704 + ABZR87_RS16290 0.89 -0.2 5,705 - ABZR87_RS16290 0.89 +0.3 5,705 - ABZR87_RS16290 0.89 +0.3 5,705 - ABZR87_RS16290 0.89 +0.5 5,705 - ABZR87_RS16290 0.89 -0.6 5,705 - ABZR87_RS16290 0.89 +0.8 5,809 + -0.4 5,809 + -0.6 5,810 - -1.2 5,984 + -0.7 5,989 + +0.2 5,989 + +0.0 5,989 + -0.6 5,990 - +0.5 5,990 - -0.7 6,005 + -0.3 6,232 + ABZR87_RS16295 0.10 -0.0 6,232 + ABZR87_RS16295 0.10 +0.2 6,232 + ABZR87_RS16295 0.10 -0.6 6,233 - ABZR87_RS16295 0.10 -0.7 6,241 + ABZR87_RS16295 0.11 +0.1 6,241 + ABZR87_RS16295 0.11 -0.1 6,241 + ABZR87_RS16295 0.11 +0.2 6,241 + ABZR87_RS16295 0.11 +0.2 6,242 - ABZR87_RS16295 0.11 +0.3 6,242 - ABZR87_RS16295 0.11 +0.1 6,242 - ABZR87_RS16295 0.11 -0.7 6,242 - ABZR87_RS16295 0.11 +0.2 6,242 - ABZR87_RS16295 0.11 +0.2 6,247 + ABZR87_RS16295 0.11 -0.2 6,248 - ABZR87_RS16295 0.11 -0.7 6,248 - ABZR87_RS16295 0.11 +1.5 6,248 - ABZR87_RS16295 0.11 -0.3 6,265 + ABZR87_RS16295 0.13 +0.4 6,265 + ABZR87_RS16295 0.13 +0.3 6,265 + ABZR87_RS16295 0.13 +1.4 6,266 - ABZR87_RS16295 0.13 -0.8 6,266 - ABZR87_RS16295 0.13 -0.6 6,266 - ABZR87_RS16295 0.13 +0.4 6,266 - ABZR87_RS16295 0.13 -0.3 6,382 + ABZR87_RS16295 0.21 +0.3 6,383 - ABZR87_RS16295 0.21 +0.2 6,383 - ABZR87_RS16295 0.21 -0.2 6,383 - ABZR87_RS16295 0.21 -1.1 6,383 - ABZR87_RS16295 0.21 -0.9 6,425 + ABZR87_RS16295 0.24 -0.7 6,472 + ABZR87_RS16295 0.28 +0.1 6,472 + ABZR87_RS16295 0.28 +0.5 6,472 + ABZR87_RS16295 0.28 +0.9 6,472 + ABZR87_RS16295 0.28 +1.1 6,473 - ABZR87_RS16295 0.28 +0.1 6,473 - ABZR87_RS16295 0.28 -0.9 6,473 - ABZR87_RS16295 0.28 +0.2 6,473 - ABZR87_RS16295 0.28 -0.6 6,551 - ABZR87_RS16295 0.34 -0.1 6,568 + ABZR87_RS16295 0.35 +0.1 6,568 + ABZR87_RS16295 0.35 +0.1 6,568 + ABZR87_RS16295 0.35 -0.3 6,568 + ABZR87_RS16295 0.35 +0.1 6,568 + ABZR87_RS16295 0.35 +0.3 6,569 - ABZR87_RS16295 0.35 -0.2 6,569 - ABZR87_RS16295 0.35 +0.2 6,607 + ABZR87_RS16295 0.38 +0.4 6,607 + ABZR87_RS16295 0.38 +0.3 6,608 - ABZR87_RS16295 0.38 -0.7 6,622 + ABZR87_RS16295 0.39 -0.1 6,622 + ABZR87_RS16295 0.39 +0.1 6,622 + ABZR87_RS16295 0.39 -0.0 6,623 - ABZR87_RS16295 0.39 -0.7
Or see this region's nucleotide sequence