Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05410

Experiment: no_plant_soil sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no_plant_soil sample 2; outgrowth in LB
1,140,724	+				+0.9
1,140,725	-				-0.5
1,140,734	+				-1.9
1,140,735	-				-0.4
1,140,746	+				-2.2
1,140,746	+				-0.6
1,140,747	-				+0.5
1,140,806	+				-0.3
1,140,822	+				+0.4
1,140,823	-				-0.2
1,140,824	+				+0.5
1,140,824	+				+0.3
1,140,824	+				+0.6
1,140,825	-				+0.5
1,140,825	-				+0.2
1,140,825	-				-1.8
1,140,832	-				-0.9
1,140,859	+				+0.8
1,140,859	+				-0.0
1,140,942	+		ABZR87_RS05405	0.24	+0.2
1,140,942	+		ABZR87_RS05405	0.24	-0.3
1,140,943	-		ABZR87_RS05405	0.24	-0.0
1,140,943	-		ABZR87_RS05405	0.24	-0.5
1,140,974	-		ABZR87_RS05405	0.31	-0.2
1,141,009	-		ABZR87_RS05405	0.38	-0.4
1,141,118	+		ABZR87_RS05405	0.61	-0.7
1,141,118	+		ABZR87_RS05405	0.61	+0.1
1,141,118	+		ABZR87_RS05405	0.61	-0.7
1,141,310	+				-0.2
1,141,310	+				+0.4
1,141,326	+				+0.6
1,141,326	+				-0.7
1,141,327	-				+0.4
1,141,327	-				-0.6
1,141,374	-				-0.5
1,141,430	-				-0.1
1,141,430	-				+0.7
1,141,502	+				+0.3
1,141,502	+				-0.3
1,141,503	-				+0.3
1,141,503	-				+1.6
1,141,503	-				-1.3
1,141,503	-				-0.3
1,141,544	+				+0.3
1,141,544	+				+0.1
1,141,544	+				-0.3
1,141,545	-				-0.9
1,141,629	+				+0.1
1,141,629	+				-0.6
1,141,629	+				-0.8
1,141,629	+				+0.4
1,141,629	+				-0.1
1,141,629	+				+0.0
1,141,630	-				-0.1
1,141,630	-				-0.8
1,141,684	+				-0.1
1,141,685	-				-0.5
1,141,723	+				+0.5
1,141,723	+				+0.5
1,141,723	+				-0.1
1,141,724	-				-0.2
1,141,724	-				-0.1
1,141,724	-				+0.1
1,141,724	-				+1.0
1,141,776	+				+0.2
1,141,776	+				+0.0
1,141,776	+				+0.2
1,141,776	+				-0.5
1,141,777	-				-0.7
1,141,832	+		ABZR87_RS05410	0.12	-0.1
1,141,832	+		ABZR87_RS05410	0.12	+0.1
1,141,833	-		ABZR87_RS05410	0.12	-0.7
1,141,833	-		ABZR87_RS05410	0.12	-0.5
1,141,833	-		ABZR87_RS05410	0.12	+0.3
1,141,852	+		ABZR87_RS05410	0.14	+0.1
1,141,852	+		ABZR87_RS05410	0.14	+0.2
1,141,852	+		ABZR87_RS05410	0.14	-0.0
1,141,853	-		ABZR87_RS05410	0.14	-0.4
1,141,853	-		ABZR87_RS05410	0.14	-0.2
1,141,866	+		ABZR87_RS05410	0.16	-0.7
1,141,867	-		ABZR87_RS05410	0.16	+1.7
1,141,909	+		ABZR87_RS05410	0.20	-0.3
1,141,909	+		ABZR87_RS05410	0.20	+0.6
1,141,983	+		ABZR87_RS05410	0.28	+0.5
1,141,983	+		ABZR87_RS05410	0.28	+0.7
1,141,983	+		ABZR87_RS05410	0.28	-0.2
1,141,990	+		ABZR87_RS05410	0.29	+0.8
1,141,990	+		ABZR87_RS05410	0.29	-0.1
1,141,990	+		ABZR87_RS05410	0.29	+1.0
1,141,990	+		ABZR87_RS05410	0.29	-1.4
1,141,990	+		ABZR87_RS05410	0.29	-0.2
1,141,990	+		ABZR87_RS05410	0.29	-1.2
1,141,991	-		ABZR87_RS05410	0.29	-0.4
1,141,991	-		ABZR87_RS05410	0.29	-0.5
1,141,991	-		ABZR87_RS05410	0.29	-0.2
1,141,991	-		ABZR87_RS05410	0.29	-0.3
1,141,997	+		ABZR87_RS05410	0.30	+0.6
1,141,998	-		ABZR87_RS05410	0.30	-0.3
1,141,998	-		ABZR87_RS05410	0.30	-0.1
1,142,017	+		ABZR87_RS05410	0.32	+0.2
1,142,017	+		ABZR87_RS05410	0.32	+0.2
1,142,017	+		ABZR87_RS05410	0.32	-0.3
1,142,017	+		ABZR87_RS05410	0.32	+0.0
1,142,017	+		ABZR87_RS05410	0.32	+2.0
1,142,284	+		ABZR87_RS05410	0.61	-1.4
1,142,284	+		ABZR87_RS05410	0.61	-0.1
1,142,284	+		ABZR87_RS05410	0.61	+3.2
1,142,285	-		ABZR87_RS05410	0.61	-0.7
1,142,285	-		ABZR87_RS05410	0.61	-0.0
1,142,285	-		ABZR87_RS05410	0.61	+0.3
1,142,285	-		ABZR87_RS05410	0.61	+0.4
1,142,285	-		ABZR87_RS05410	0.61	-0.0
1,142,285	-		ABZR87_RS05410	0.61	-0.6
1,142,381	-		ABZR87_RS05410	0.71	-0.3
1,142,385	-		ABZR87_RS05410	0.72	-0.3
1,142,410	+		ABZR87_RS05410	0.74	-1.1
1,142,410	+		ABZR87_RS05410	0.74	+0.3
1,142,410	+		ABZR87_RS05410	0.74	-0.8
1,142,410	+		ABZR87_RS05410	0.74	+0.4
1,142,410	+		ABZR87_RS05410	0.74	+0.0
1,142,411	-		ABZR87_RS05410	0.74	+0.1
1,142,411	-		ABZR87_RS05410	0.74	+0.1
1,142,411	-		ABZR87_RS05410	0.74	-0.4
1,142,411	-		ABZR87_RS05410	0.74	+0.0
1,142,411	-		ABZR87_RS05410	0.74	-0.3
1,142,411	-		ABZR87_RS05410	0.74	+1.0
1,142,447	-		ABZR87_RS05410	0.78	-0.7
1,142,447	-		ABZR87_RS05410	0.78	-0.0
1,142,447	-		ABZR87_RS05410	0.78	-0.0
1,142,447	-		ABZR87_RS05410	0.78	-0.7
1,142,471	+		ABZR87_RS05410	0.81	-1.9
1,142,471	+		ABZR87_RS05410	0.81	-0.7
1,142,472	-		ABZR87_RS05410	0.81	-0.1
1,142,508	+		ABZR87_RS05410	0.85	+0.2
1,142,508	+		ABZR87_RS05410	0.85	+0.7
1,142,508	+		ABZR87_RS05410	0.85	-1.2
1,142,509	-		ABZR87_RS05410	0.85	-0.3
1,142,509	-		ABZR87_RS05410	0.85	+0.6
1,142,509	-		ABZR87_RS05410	0.85	+0.6
1,142,509	-		ABZR87_RS05410	0.85	+0.1
1,142,509	-		ABZR87_RS05410	0.85	-0.8
1,142,509	-		ABZR87_RS05410	0.85	+0.2
1,142,509	-		ABZR87_RS05410	0.85	-0.3
1,142,563	+				-0.8
1,142,563	+				+0.2
1,142,564	-				+0.1
1,142,564	-				-0.3
1,142,564	-				-0.2
1,142,564	-				-0.1
1,142,564	-				-1.1
1,142,564	-				-0.3
1,142,689	+				+0.2
1,142,689	+				+1.1
1,142,689	+				+0.6
1,142,689	+				+0.2
1,142,689	+				-0.5
1,142,689	+				-0.9
1,142,689	+				-0.5
1,142,690	-				+0.2
1,142,690	-				-0.1
1,142,690	-				-1.2
1,142,690	-				-0.2
1,142,690	-				+0.2
1,142,690	-				-0.7
1,142,690	-				-0.4
1,142,690	-				-2.0
1,142,700	-				+0.0
1,142,737	-				+0.7
1,142,774	+				-0.0
1,142,775	-				+0.1
1,142,775	-				-0.7
1,142,775	-				-0.3
1,142,803	+				-0.3
1,142,803	+				-0.1
1,142,803	+				-0.4
1,142,803	+				+0.4
1,142,803	+				+0.4
1,142,803	+				+0.6
1,142,803	+				+0.5
1,142,803	+				-0.7
1,142,803	+				+0.1
1,142,804	-				+1.1
1,142,804	-				-0.1
1,142,804	-				-0.0
1,142,804	-				+0.5
1,142,804	-				-0.1
1,142,805	+				+0.4
1,142,805	+				+0.5
1,142,805	+				-0.2
1,142,805	+				-0.3
1,142,806	-				-0.4
1,142,859	+				+1.0
1,142,859	+				-0.7
1,142,859	+				-0.9
1,142,859	+				+0.8
1,142,860	-				-0.6
1,142,860	-				-0.4
1,142,860	-				-0.9
1,142,860	-				+0.2
1,142,920	+				-0.0
1,143,089	+		ABZR87_RS05415	0.19	+0.4
1,143,089	+		ABZR87_RS05415	0.19	-0.3
1,143,089	+		ABZR87_RS05415	0.19	-0.3
1,143,089	+		ABZR87_RS05415	0.19	-0.7
1,143,089	+		ABZR87_RS05415	0.19	+0.6
1,143,090	-		ABZR87_RS05415	0.20	+0.6
1,143,164	+		ABZR87_RS05415	0.59	-0.9
1,143,164	+		ABZR87_RS05415	0.59	-0.5
1,143,164	+		ABZR87_RS05415	0.59	+0.1
1,143,164	+		ABZR87_RS05415	0.59	+0.1
1,143,164	+		ABZR87_RS05415	0.59	-0.1
1,143,164	+		ABZR87_RS05415	0.59	+0.1
1,143,164	+		ABZR87_RS05415	0.59	+0.1
1,143,164	+		ABZR87_RS05415	0.59	+1.0
1,143,164	+		ABZR87_RS05415	0.59	-0.8
1,143,165	-		ABZR87_RS05415	0.59	+0.0
1,143,165	-		ABZR87_RS05415	0.59	+0.3
1,143,165	-		ABZR87_RS05415	0.59	-0.3
1,143,165	-		ABZR87_RS05415	0.59	-0.3
1,143,194	+		ABZR87_RS05415	0.75	+0.3
1,143,194	+		ABZR87_RS05415	0.75	-0.7
1,143,194	+		ABZR87_RS05415	0.75	-0.3
1,143,195	-		ABZR87_RS05415	0.75	+0.3
1,143,195	-		ABZR87_RS05415	0.75	+0.9
1,143,195	-		ABZR87_RS05415	0.75	+0.5
1,143,195	-		ABZR87_RS05415	0.75	+0.8
1,143,195	-		ABZR87_RS05415	0.75	-0.9
1,143,241	+				+0.5
1,143,241	+				-0.7
1,143,242	-				-0.2
1,143,242	-				+0.2
1,143,309	+				+1.3
1,143,374	-		ABZR87_RS05420	0.12	-0.9
1,143,406	+		ABZR87_RS05420	0.16	-0.0
1,143,407	-		ABZR87_RS05420	0.16	-0.4
1,143,407	-		ABZR87_RS05420	0.16	-0.8
1,143,409	+		ABZR87_RS05420	0.16	+0.6
1,143,409	+		ABZR87_RS05420	0.16	-0.0
1,143,409	+		ABZR87_RS05420	0.16	+0.3
1,143,409	+		ABZR87_RS05420	0.16	+0.4
1,143,410	-		ABZR87_RS05420	0.16	-1.4
1,143,410	-		ABZR87_RS05420	0.16	+0.7
1,143,410	-		ABZR87_RS05420	0.16	-0.1
1,143,410	-		ABZR87_RS05420	0.16	+1.0
1,143,410	-		ABZR87_RS05420	0.16	+0.1
1,143,428	+		ABZR87_RS05420	0.18	-0.0
1,143,428	+		ABZR87_RS05420	0.18	-0.2
1,143,428	+		ABZR87_RS05420	0.18	-0.1
1,143,428	+		ABZR87_RS05420	0.18	+0.5
1,143,428	+		ABZR87_RS05420	0.18	-0.3
1,143,428	+		ABZR87_RS05420	0.18	-2.3
1,143,428	+		ABZR87_RS05420	0.18	-0.4
1,143,428	+		ABZR87_RS05420	0.18	+0.4
1,143,428	+		ABZR87_RS05420	0.18	-0.7
1,143,428	+		ABZR87_RS05420	0.18	-0.3
1,143,428	+		ABZR87_RS05420	0.18	-0.2
1,143,428	+		ABZR87_RS05420	0.18	-0.9
1,143,428	+		ABZR87_RS05420	0.18	+0.2
1,143,428	+		ABZR87_RS05420	0.18	+0.3
1,143,428	+		ABZR87_RS05420	0.18	+0.2
1,143,428	+		ABZR87_RS05420	0.18	+1.4
1,143,428	+		ABZR87_RS05420	0.18	-0.0
1,143,428	+		ABZR87_RS05420	0.18	+0.6
1,143,428	+		ABZR87_RS05420	0.18	-0.2
1,143,428	+		ABZR87_RS05420	0.18	-0.3
1,143,428	+		ABZR87_RS05420	0.18	+0.6
1,143,428	+		ABZR87_RS05420	0.18	-0.5
1,143,429	-		ABZR87_RS05420	0.18	-0.7
1,143,429	-		ABZR87_RS05420	0.18	-0.4
1,143,429	-		ABZR87_RS05420	0.18	+1.4
1,143,429	-		ABZR87_RS05420	0.18	+0.1
1,143,429	-		ABZR87_RS05420	0.18	-1.7
1,143,429	-		ABZR87_RS05420	0.18	+0.4
1,143,429	-		ABZR87_RS05420	0.18	-0.1
1,143,429	-		ABZR87_RS05420	0.18	+0.2
1,143,429	-		ABZR87_RS05420	0.18	+0.6
1,143,430	+		ABZR87_RS05420	0.18	+0.1
1,143,430	+		ABZR87_RS05420	0.18	+0.3
1,143,430	+		ABZR87_RS05420	0.18	-0.5
1,143,430	+		ABZR87_RS05420	0.18	+0.5
1,143,430	+		ABZR87_RS05420	0.18	-0.2
1,143,430	+		ABZR87_RS05420	0.18	+0.7
1,143,430	+		ABZR87_RS05420	0.18	-2.5
1,143,430	+		ABZR87_RS05420	0.18	-0.0
1,143,430	+		ABZR87_RS05420	0.18	+0.2
1,143,431	-		ABZR87_RS05420	0.18	+0.8
1,143,431	-		ABZR87_RS05420	0.18	+0.0
1,143,431	-		ABZR87_RS05420	0.18	-0.3
1,143,431	-		ABZR87_RS05420	0.18	+0.2
1,143,431	-		ABZR87_RS05420	0.18	-0.5
1,143,433	+		ABZR87_RS05420	0.18	+0.4
1,143,433	+		ABZR87_RS05420	0.18	-0.3
1,143,433	+		ABZR87_RS05420	0.18	-0.5
1,143,433	+		ABZR87_RS05420	0.18	+0.8
1,143,433	+		ABZR87_RS05420	0.18	+0.1
1,143,434	-		ABZR87_RS05420	0.18	-1.0
1,143,434	-		ABZR87_RS05420	0.18	-0.4
1,143,434	-		ABZR87_RS05420	0.18	-1.0
1,143,447	+		ABZR87_RS05420	0.20	-0.3
1,143,447	+		ABZR87_RS05420	0.20	-2.2
1,143,447	+		ABZR87_RS05420	0.20	+0.1
1,143,447	+		ABZR87_RS05420	0.20	+0.8
1,143,447	+		ABZR87_RS05420	0.20	-0.1
1,143,447	+		ABZR87_RS05420	0.20	-1.0
1,143,448	-		ABZR87_RS05420	0.20	-0.8
1,143,448	-		ABZR87_RS05420	0.20	+0.5
1,143,476	+		ABZR87_RS05420	0.23	-0.0
1,143,477	-		ABZR87_RS05420	0.23	-0.1
1,143,487	+		ABZR87_RS05420	0.24	+0.0
1,143,487	+		ABZR87_RS05420	0.24	+0.0
1,143,487	+		ABZR87_RS05420	0.24	-0.2
1,143,487	+		ABZR87_RS05420	0.24	-0.1
1,143,487	+		ABZR87_RS05420	0.24	+0.0
1,143,488	-		ABZR87_RS05420	0.24	-1.9
1,143,488	-		ABZR87_RS05420	0.24	-0.3
1,143,519	+		ABZR87_RS05420	0.27	+0.5
1,143,550	+		ABZR87_RS05420	0.31	+0.3
1,143,551	-		ABZR87_RS05420	0.31	-1.5
1,143,570	+		ABZR87_RS05420	0.33	+0.1
1,143,571	-		ABZR87_RS05420	0.33	+0.0
1,143,571	-		ABZR87_RS05420	0.33	-0.7
1,143,571	-		ABZR87_RS05420	0.33	+0.3
1,143,571	-		ABZR87_RS05420	0.33	-1.0