Experiment: no_plant_soil sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03545 and ABZR87_RS03550 are separated by 89 nucleotides ABZR87_RS03550 and ABZR87_RS03555 are separated by 103 nucleotides ABZR87_RS03555 and ABZR87_RS03560 are separated by 17 nucleotides ABZR87_RS03560 and ABZR87_RS03565 are separated by 131 nucleotides
ABZR87_RS03545: ABZR87_RS03545 - MarR family transcriptional regulator, at 745,719 to 746,207
_RS03545
ABZR87_RS03550: ABZR87_RS03550 - response regulator transcription factor, at 746,297 to 746,995
_RS03550
ABZR87_RS03555: ABZR87_RS03555 - S1C family serine protease, at 747,099 to 748,025
_RS03555
ABZR87_RS03560: ABZR87_RS03560 - hypothetical protein, at 748,043 to 748,630
_RS03560
ABZR87_RS03565: ABZR87_RS03565 - TetR/AcrR family transcriptional regulator, at 748,762 to 749,370
_RS03565
Position (kb) 747
748
749 Strain fitness (log2 ratio) -2
-1
0
1
2 at 746.199 kb on - strand at 746.199 kb on - strand at 746.199 kb on - strand at 746.805 kb on + strand, within ABZR87_RS03550 at 746.805 kb on + strand, within ABZR87_RS03550 at 746.805 kb on + strand, within ABZR87_RS03550 at 746.805 kb on + strand, within ABZR87_RS03550 at 746.806 kb on - strand, within ABZR87_RS03550 at 746.806 kb on - strand, within ABZR87_RS03550 at 747.036 kb on + strand at 747.036 kb on + strand at 747.036 kb on + strand at 747.036 kb on + strand at 747.036 kb on + strand at 747.036 kb on + strand at 747.036 kb on + strand at 747.036 kb on + strand at 747.037 kb on - strand at 747.037 kb on - strand at 747.037 kb on - strand at 747.037 kb on - strand at 747.037 kb on - strand at 747.037 kb on - strand at 747.037 kb on - strand at 747.071 kb on + strand at 747.071 kb on + strand at 747.071 kb on + strand at 747.071 kb on + strand at 747.071 kb on + strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.075 kb on + strand at 747.075 kb on - strand at 747.075 kb on - strand at 747.075 kb on - strand at 747.075 kb on - strand at 747.134 kb on - strand at 747.151 kb on + strand at 747.206 kb on - strand, within ABZR87_RS03555 at 747.206 kb on - strand, within ABZR87_RS03555 at 747.262 kb on + strand, within ABZR87_RS03555 at 747.262 kb on + strand, within ABZR87_RS03555 at 747.262 kb on + strand, within ABZR87_RS03555 at 747.262 kb on + strand, within ABZR87_RS03555 at 747.262 kb on + strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.466 kb on + strand, within ABZR87_RS03555 at 747.466 kb on + strand, within ABZR87_RS03555 at 747.467 kb on - strand, within ABZR87_RS03555 at 747.494 kb on + strand, within ABZR87_RS03555 at 747.495 kb on - strand, within ABZR87_RS03555 at 747.661 kb on + strand, within ABZR87_RS03555 at 747.662 kb on - strand, within ABZR87_RS03555 at 747.715 kb on + strand, within ABZR87_RS03555 at 747.766 kb on + strand, within ABZR87_RS03555 at 747.766 kb on + strand, within ABZR87_RS03555 at 747.766 kb on + strand, within ABZR87_RS03555 at 747.766 kb on + strand, within ABZR87_RS03555 at 747.767 kb on - strand, within ABZR87_RS03555 at 747.767 kb on - strand, within ABZR87_RS03555 at 748.183 kb on - strand, within ABZR87_RS03560 at 748.183 kb on - strand, within ABZR87_RS03560 at 748.272 kb on + strand, within ABZR87_RS03560 at 748.272 kb on + strand, within ABZR87_RS03560 at 748.290 kb on + strand, within ABZR87_RS03560 at 748.290 kb on + strand, within ABZR87_RS03560 at 748.290 kb on + strand, within ABZR87_RS03560 at 748.291 kb on - strand, within ABZR87_RS03560 at 748.291 kb on - strand, within ABZR87_RS03560 at 748.291 kb on - strand, within ABZR87_RS03560 at 748.338 kb on + strand, within ABZR87_RS03560 at 748.338 kb on + strand, within ABZR87_RS03560 at 748.339 kb on - strand, within ABZR87_RS03560 at 748.339 kb on - strand, within ABZR87_RS03560 at 748.339 kb on - strand, within ABZR87_RS03560 at 748.339 kb on - strand, within ABZR87_RS03560 at 748.357 kb on + strand, within ABZR87_RS03560 at 748.357 kb on + strand, within ABZR87_RS03560 at 748.358 kb on - strand, within ABZR87_RS03560 at 748.358 kb on - strand, within ABZR87_RS03560 at 748.557 kb on + strand, within ABZR87_RS03560 at 748.557 kb on + strand, within ABZR87_RS03560 at 748.557 kb on + strand, within ABZR87_RS03560 at 748.558 kb on - strand, within ABZR87_RS03560 at 748.558 kb on - strand, within ABZR87_RS03560 at 748.558 kb on - strand, within ABZR87_RS03560 at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.686 kb on + strand at 748.686 kb on + strand at 748.687 kb on - strand at 748.687 kb on - strand at 748.687 kb on - strand at 748.935 kb on + strand, within ABZR87_RS03565 at 749.016 kb on - strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 2; outgrowth in LB remove 746,199 - +0.5 746,199 - +0.2 746,199 - +0.9 746,805 + ABZR87_RS03550 0.73 -0.1 746,805 + ABZR87_RS03550 0.73 +0.6 746,805 + ABZR87_RS03550 0.73 +0.6 746,805 + ABZR87_RS03550 0.73 +0.7 746,806 - ABZR87_RS03550 0.73 +0.1 746,806 - ABZR87_RS03550 0.73 -0.5 747,036 + +0.9 747,036 + -0.2 747,036 + -0.6 747,036 + -0.6 747,036 + +0.2 747,036 + +0.2 747,036 + -0.3 747,036 + -0.2 747,037 - +1.3 747,037 - -0.8 747,037 - -0.5 747,037 - -0.5 747,037 - -0.4 747,037 - +0.2 747,037 - -0.4 747,071 + -0.8 747,071 + +0.0 747,071 + +0.1 747,071 + -0.3 747,071 + -0.1 747,072 - +0.3 747,072 - -0.8 747,072 - +0.0 747,072 - +0.3 747,072 - +0.8 747,072 - +0.1 747,072 - -0.2 747,072 - +0.6 747,072 - +0.0 747,072 - -0.3 747,072 - -0.3 747,072 - -0.2 747,072 - -0.3 747,074 + -0.5 747,074 + +1.7 747,074 + +0.1 747,074 + -0.5 747,074 + -0.4 747,074 + -0.7 747,075 + -1.6 747,075 - -0.8 747,075 - +0.6 747,075 - -0.0 747,075 - -0.6 747,134 - -0.1 747,151 + -1.3 747,206 - ABZR87_RS03555 0.12 +0.1 747,206 - ABZR87_RS03555 0.12 -0.7 747,262 + ABZR87_RS03555 0.18 -0.3 747,262 + ABZR87_RS03555 0.18 -1.9 747,262 + ABZR87_RS03555 0.18 -0.1 747,262 + ABZR87_RS03555 0.18 -2.2 747,262 + ABZR87_RS03555 0.18 +0.1 747,263 - ABZR87_RS03555 0.18 -0.6 747,263 - ABZR87_RS03555 0.18 +0.2 747,263 - ABZR87_RS03555 0.18 -0.2 747,263 - ABZR87_RS03555 0.18 +0.3 747,263 - ABZR87_RS03555 0.18 -0.1 747,263 - ABZR87_RS03555 0.18 -0.1 747,263 - ABZR87_RS03555 0.18 -0.8 747,263 - ABZR87_RS03555 0.18 -0.7 747,466 + ABZR87_RS03555 0.40 -2.4 747,466 + ABZR87_RS03555 0.40 -1.6 747,467 - ABZR87_RS03555 0.40 -0.6 747,494 + ABZR87_RS03555 0.43 -0.1 747,495 - ABZR87_RS03555 0.43 +0.2 747,661 + ABZR87_RS03555 0.61 -0.5 747,662 - ABZR87_RS03555 0.61 -0.3 747,715 + ABZR87_RS03555 0.66 -0.3 747,766 + ABZR87_RS03555 0.72 -0.9 747,766 + ABZR87_RS03555 0.72 -0.0 747,766 + ABZR87_RS03555 0.72 +0.1 747,766 + ABZR87_RS03555 0.72 +2.6 747,767 - ABZR87_RS03555 0.72 -0.1 747,767 - ABZR87_RS03555 0.72 +0.1 748,183 - ABZR87_RS03560 0.24 +0.5 748,183 - ABZR87_RS03560 0.24 -0.5 748,272 + ABZR87_RS03560 0.39 +0.6 748,272 + ABZR87_RS03560 0.39 +0.1 748,290 + ABZR87_RS03560 0.42 -1.1 748,290 + ABZR87_RS03560 0.42 -0.7 748,290 + ABZR87_RS03560 0.42 +0.1 748,291 - ABZR87_RS03560 0.42 -0.1 748,291 - ABZR87_RS03560 0.42 +0.4 748,291 - ABZR87_RS03560 0.42 +1.1 748,338 + ABZR87_RS03560 0.50 -1.3 748,338 + ABZR87_RS03560 0.50 -0.1 748,339 - ABZR87_RS03560 0.50 -1.0 748,339 - ABZR87_RS03560 0.50 -0.2 748,339 - ABZR87_RS03560 0.50 +0.2 748,339 - ABZR87_RS03560 0.50 -0.2 748,357 + ABZR87_RS03560 0.53 +0.4 748,357 + ABZR87_RS03560 0.53 -1.4 748,358 - ABZR87_RS03560 0.54 -0.6 748,358 - ABZR87_RS03560 0.54 +0.3 748,557 + ABZR87_RS03560 0.87 +0.3 748,557 + ABZR87_RS03560 0.87 -1.7 748,557 + ABZR87_RS03560 0.87 -0.9 748,558 - ABZR87_RS03560 0.88 -0.2 748,558 - ABZR87_RS03560 0.88 -0.5 748,558 - ABZR87_RS03560 0.88 +1.3 748,630 + -1.3 748,630 + +2.0 748,630 + +0.0 748,630 + +0.1 748,630 + -0.0 748,630 + -0.0 748,630 + -0.5 748,631 - -1.1 748,631 - -0.2 748,631 - -0.4 748,631 - +0.6 748,631 - -0.2 748,631 - -0.4 748,631 - -1.1 748,686 + +0.2 748,686 + -1.2 748,687 - +0.2 748,687 - -0.3 748,687 - +1.2 748,935 + ABZR87_RS03565 0.28 -0.2 749,016 - ABZR87_RS03565 0.42 -0.9 749,021 + ABZR87_RS03565 0.43 -0.0 749,021 + ABZR87_RS03565 0.43 -1.6 749,021 + ABZR87_RS03565 0.43 -0.4 749,021 + ABZR87_RS03565 0.43 -1.2 749,021 + ABZR87_RS03565 0.43 -1.8 749,022 - ABZR87_RS03565 0.43 -2.0 749,022 - ABZR87_RS03565 0.43 -1.3 749,022 - ABZR87_RS03565 0.43 -2.3 749,022 - ABZR87_RS03565 0.43 -1.0 749,022 - ABZR87_RS03565 0.43 -0.8 749,022 - ABZR87_RS03565 0.43 -0.2 749,022 - ABZR87_RS03565 0.43 -2.0 749,022 - ABZR87_RS03565 0.43 -0.8
Or see this region's nucleotide sequence