Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02855

Experiment: no_plant_soil sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02850 and ABZR87_RS02855 are separated by 83 nucleotidesABZR87_RS02855 and ABZR87_RS02860 are separated by 114 nucleotidesABZR87_RS02860 and ABZR87_RS02865 are separated by 186 nucleotides ABZR87_RS02850: ABZR87_RS02850 - elongation factor Tu, at 590,138 to 591,346 _RS02850 ABZR87_RS02855: ABZR87_RS02855 - elongation factor G, at 591,430 to 593,556 _RS02855 ABZR87_RS02860: ABZR87_RS02860 - 30S ribosomal protein S7, at 593,671 to 594,141 _RS02860 ABZR87_RS02865: ABZR87_RS02865 - 30S ribosomal protein S12, at 594,328 to 594,705 _RS02865 Position (kb) 591 592 593 594Strain fitness (log2 ratio) -1 0 1 2at 590.495 kb on - strand, within ABZR87_RS02850at 590.959 kb on - strand, within ABZR87_RS02850at 590.959 kb on - strand, within ABZR87_RS02850at 590.959 kb on - strand, within ABZR87_RS02850at 590.959 kb on - strand, within ABZR87_RS02850at 590.959 kb on - strand, within ABZR87_RS02850at 591.373 kb on - strandat 591.380 kb on - strandat 591.432 kb on - strandat 591.432 kb on - strandat 591.432 kb on - strandat 591.439 kb on - strandat 591.439 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 2; outgrowth in LB
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590,495 - ABZR87_RS02850 0.30 -0.7
590,959 - ABZR87_RS02850 0.68 -0.8
590,959 - ABZR87_RS02850 0.68 -1.2
590,959 - ABZR87_RS02850 0.68 +1.9
590,959 - ABZR87_RS02850 0.68 +0.3
590,959 - ABZR87_RS02850 0.68 -0.8
591,373 - +0.3
591,380 - -0.6
591,432 - +0.0
591,432 - -0.3
591,432 - -0.8
591,439 - -0.5
591,439 - +0.8

Or see this region's nucleotide sequence