Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02440

Experiment: no_plant_soil sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02435 and ABZR87_RS02440 are separated by 84 nucleotidesABZR87_RS02440 and ABZR87_RS02445 are separated by 61 nucleotidesABZR87_RS02445 and ABZR87_RS02450 are separated by 20 nucleotidesABZR87_RS02450 and ABZR87_RS02455 are separated by 62 nucleotides ABZR87_RS02435: ABZR87_RS02435 - ABC transporter ATP-binding protein, at 521,108 to 522,193 _RS02435 ABZR87_RS02440: ABZR87_RS02440 - twin-arginine translocase subunit TatC, at 522,278 to 523,081 _RS02440 ABZR87_RS02445: ABZR87_RS02445 - Sec-independent protein translocase protein TatB, at 523,143 to 523,655 _RS02445 ABZR87_RS02450: ABZR87_RS02450 - Sec-independent protein translocase subunit TatA, at 523,676 to 523,924 _RS02450 ABZR87_RS02455: ABZR87_RS02455 - membrane protein, at 523,987 to 524,361 _RS02455 Position (kb) 522 523 524Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 521.287 kb on - strand, within ABZR87_RS02435at 521.287 kb on - strand, within ABZR87_RS02435at 521.375 kb on + strand, within ABZR87_RS02435at 521.376 kb on - strand, within ABZR87_RS02435at 521.376 kb on - strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.573 kb on + strand, within ABZR87_RS02435at 521.574 kb on - strand, within ABZR87_RS02435at 521.574 kb on - strand, within ABZR87_RS02435at 521.574 kb on - strand, within ABZR87_RS02435at 521.576 kb on - strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.789 kb on + strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 521.790 kb on - strand, within ABZR87_RS02435at 522.041 kb on + strand, within ABZR87_RS02435at 522.041 kb on + strand, within ABZR87_RS02435at 522.041 kb on + strand, within ABZR87_RS02435at 522.041 kb on + strand, within ABZR87_RS02435at 522.042 kb on - strand, within ABZR87_RS02435at 522.042 kb on - strand, within ABZR87_RS02435at 522.042 kb on - strand, within ABZR87_RS02435at 522.042 kb on - strand, within ABZR87_RS02435at 522.042 kb on - strand, within ABZR87_RS02435at 522.146 kb on + strandat 522.146 kb on + strandat 522.147 kb on - strandat 522.147 kb on - strandat 522.147 kb on - strandat 522.183 kb on - strandat 522.369 kb on + strand, within ABZR87_RS02440at 522.369 kb on + strand, within ABZR87_RS02440at 522.369 kb on + strand, within ABZR87_RS02440at 522.369 kb on + strand, within ABZR87_RS02440at 522.370 kb on - strand, within ABZR87_RS02440at 522.370 kb on - strand, within ABZR87_RS02440at 522.370 kb on - strand, within ABZR87_RS02440at 522.370 kb on - strand, within ABZR87_RS02440at 522.462 kb on + strand, within ABZR87_RS02440at 522.462 kb on + strand, within ABZR87_RS02440at 522.462 kb on + strand, within ABZR87_RS02440at 522.462 kb on + strand, within ABZR87_RS02440at 522.462 kb on + strand, within ABZR87_RS02440at 522.463 kb on - strand, within ABZR87_RS02440at 522.463 kb on - strand, within ABZR87_RS02440at 522.528 kb on - strand, within ABZR87_RS02440at 522.528 kb on - strand, within ABZR87_RS02440at 522.528 kb on - strand, within ABZR87_RS02440at 522.528 kb on - strand, within ABZR87_RS02440at 522.533 kb on + strand, within ABZR87_RS02440at 522.534 kb on - strand, within ABZR87_RS02440at 522.534 kb on - strand, within ABZR87_RS02440at 522.585 kb on + strand, within ABZR87_RS02440at 522.585 kb on + strand, within ABZR87_RS02440at 522.586 kb on - strand, within ABZR87_RS02440at 522.586 kb on - strand, within ABZR87_RS02440at 522.586 kb on - strand, within ABZR87_RS02440at 522.586 kb on - strand, within ABZR87_RS02440at 522.586 kb on - strand, within ABZR87_RS02440at 522.586 kb on - strand, within ABZR87_RS02440at 522.630 kb on + strand, within ABZR87_RS02440at 522.630 kb on + strand, within ABZR87_RS02440at 522.630 kb on + strand, within ABZR87_RS02440at 522.631 kb on - strand, within ABZR87_RS02440at 522.631 kb on - strand, within ABZR87_RS02440at 522.672 kb on + strand, within ABZR87_RS02440at 522.673 kb on - strand, within ABZR87_RS02440at 522.673 kb on - strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.706 kb on - strand, within ABZR87_RS02440at 522.706 kb on - strand, within ABZR87_RS02440at 522.706 kb on - strand, within ABZR87_RS02440at 522.706 kb on - strand, within ABZR87_RS02440at 522.750 kb on + strand, within ABZR87_RS02440at 522.750 kb on + strand, within ABZR87_RS02440at 522.751 kb on - strand, within ABZR87_RS02440at 522.751 kb on - strand, within ABZR87_RS02440at 522.751 kb on - strand, within ABZR87_RS02440at 522.783 kb on + strand, within ABZR87_RS02440at 522.783 kb on + strand, within ABZR87_RS02440at 522.784 kb on - strand, within ABZR87_RS02440at 522.942 kb on + strand, within ABZR87_RS02440at 522.942 kb on + strand, within ABZR87_RS02440at 523.295 kb on + strand, within ABZR87_RS02445at 523.296 kb on - strand, within ABZR87_RS02445at 523.531 kb on + strand, within ABZR87_RS02445at 523.531 kb on + strand, within ABZR87_RS02445at 523.531 kb on + strand, within ABZR87_RS02445at 523.531 kb on + strand, within ABZR87_RS02445at 523.532 kb on - strand, within ABZR87_RS02445at 523.532 kb on - strand, within ABZR87_RS02445at 523.532 kb on - strand, within ABZR87_RS02445at 523.532 kb on - strand, within ABZR87_RS02445at 523.532 kb on - strand, within ABZR87_RS02445at 523.532 kb on - strand, within ABZR87_RS02445at 523.913 kb on - strandat 523.929 kb on + strandat 523.930 kb on - strandat 523.930 kb on - strandat 523.930 kb on - strandat 523.930 kb on - strandat 523.930 kb on - strandat 523.930 kb on - strandat 523.939 kb on + strandat 523.939 kb on + strandat 523.940 kb on - strandat 523.940 kb on - strandat 523.943 kb on + strandat 523.943 kb on + strandat 523.944 kb on - strandat 524.000 kb on + strandat 524.001 kb on - strandat 524.001 kb on - strandat 524.001 kb on - strandat 524.001 kb on - strandat 524.001 kb on - strandat 524.024 kb on + strandat 524.025 kb on - strand, within ABZR87_RS02455at 524.043 kb on + strand, within ABZR87_RS02455at 524.043 kb on + strand, within ABZR87_RS02455at 524.044 kb on - strand, within ABZR87_RS02455at 524.044 kb on - strand, within ABZR87_RS02455at 524.044 kb on - strand, within ABZR87_RS02455at 524.044 kb on - strand, within ABZR87_RS02455at 524.048 kb on + strand, within ABZR87_RS02455at 524.048 kb on + strand, within ABZR87_RS02455at 524.048 kb on + strand, within ABZR87_RS02455at 524.048 kb on + strand, within ABZR87_RS02455at 524.049 kb on - strand, within ABZR87_RS02455

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 2; outgrowth in LB
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521,287 - ABZR87_RS02435 0.16 -0.9
521,287 - ABZR87_RS02435 0.16 -0.5
521,375 + ABZR87_RS02435 0.25 +0.4
521,376 - ABZR87_RS02435 0.25 +0.3
521,376 - ABZR87_RS02435 0.25 +1.0
521,573 + ABZR87_RS02435 0.43 +0.4
521,573 + ABZR87_RS02435 0.43 +0.2
521,573 + ABZR87_RS02435 0.43 +0.4
521,573 + ABZR87_RS02435 0.43 -0.6
521,573 + ABZR87_RS02435 0.43 +0.6
521,573 + ABZR87_RS02435 0.43 -1.3
521,573 + ABZR87_RS02435 0.43 -0.5
521,573 + ABZR87_RS02435 0.43 +0.3
521,573 + ABZR87_RS02435 0.43 -0.4
521,574 - ABZR87_RS02435 0.43 +0.5
521,574 - ABZR87_RS02435 0.43 -1.0
521,574 - ABZR87_RS02435 0.43 +0.5
521,576 - ABZR87_RS02435 0.43 +0.9
521,789 + ABZR87_RS02435 0.63 +0.0
521,789 + ABZR87_RS02435 0.63 -0.3
521,789 + ABZR87_RS02435 0.63 -1.5
521,789 + ABZR87_RS02435 0.63 -0.2
521,789 + ABZR87_RS02435 0.63 -0.5
521,789 + ABZR87_RS02435 0.63 -1.0
521,789 + ABZR87_RS02435 0.63 +0.5
521,789 + ABZR87_RS02435 0.63 -1.2
521,789 + ABZR87_RS02435 0.63 +0.3
521,789 + ABZR87_RS02435 0.63 -0.4
521,789 + ABZR87_RS02435 0.63 +0.7
521,789 + ABZR87_RS02435 0.63 -0.9
521,789 + ABZR87_RS02435 0.63 -0.1
521,789 + ABZR87_RS02435 0.63 +0.7
521,789 + ABZR87_RS02435 0.63 -0.6
521,789 + ABZR87_RS02435 0.63 +0.4
521,789 + ABZR87_RS02435 0.63 +1.2
521,789 + ABZR87_RS02435 0.63 -0.1
521,789 + ABZR87_RS02435 0.63 +0.1
521,789 + ABZR87_RS02435 0.63 -1.4
521,789 + ABZR87_RS02435 0.63 +0.3
521,789 + ABZR87_RS02435 0.63 +0.6
521,789 + ABZR87_RS02435 0.63 +0.0
521,789 + ABZR87_RS02435 0.63 -0.9
521,789 + ABZR87_RS02435 0.63 +1.1
521,789 + ABZR87_RS02435 0.63 -1.2
521,789 + ABZR87_RS02435 0.63 -0.2
521,789 + ABZR87_RS02435 0.63 -0.2
521,789 + ABZR87_RS02435 0.63 +0.6
521,789 + ABZR87_RS02435 0.63 +0.3
521,790 - ABZR87_RS02435 0.63 -0.4
521,790 - ABZR87_RS02435 0.63 -0.2
521,790 - ABZR87_RS02435 0.63 +0.0
521,790 - ABZR87_RS02435 0.63 +0.1
521,790 - ABZR87_RS02435 0.63 +0.5
521,790 - ABZR87_RS02435 0.63 -0.2
521,790 - ABZR87_RS02435 0.63 +0.3
521,790 - ABZR87_RS02435 0.63 +0.9
521,790 - ABZR87_RS02435 0.63 +1.3
521,790 - ABZR87_RS02435 0.63 -0.6
521,790 - ABZR87_RS02435 0.63 +0.8
521,790 - ABZR87_RS02435 0.63 +0.0
521,790 - ABZR87_RS02435 0.63 +0.0
521,790 - ABZR87_RS02435 0.63 -0.5
521,790 - ABZR87_RS02435 0.63 +1.0
521,790 - ABZR87_RS02435 0.63 -0.1
521,790 - ABZR87_RS02435 0.63 +0.7
521,790 - ABZR87_RS02435 0.63 +0.2
521,790 - ABZR87_RS02435 0.63 +0.2
521,790 - ABZR87_RS02435 0.63 +0.5
521,790 - ABZR87_RS02435 0.63 +0.7
521,790 - ABZR87_RS02435 0.63 -0.1
521,790 - ABZR87_RS02435 0.63 -0.1
521,790 - ABZR87_RS02435 0.63 -0.1
521,790 - ABZR87_RS02435 0.63 +0.3
521,790 - ABZR87_RS02435 0.63 +0.2
521,790 - ABZR87_RS02435 0.63 -0.2
521,790 - ABZR87_RS02435 0.63 +0.2
521,790 - ABZR87_RS02435 0.63 -0.1
521,790 - ABZR87_RS02435 0.63 -0.4
521,790 - ABZR87_RS02435 0.63 +0.2
521,790 - ABZR87_RS02435 0.63 -0.9
522,041 + ABZR87_RS02435 0.86 -1.6
522,041 + ABZR87_RS02435 0.86 +0.6
522,041 + ABZR87_RS02435 0.86 +1.0
522,041 + ABZR87_RS02435 0.86 +0.1
522,042 - ABZR87_RS02435 0.86 -0.2
522,042 - ABZR87_RS02435 0.86 +0.5
522,042 - ABZR87_RS02435 0.86 +1.0
522,042 - ABZR87_RS02435 0.86 +0.7
522,042 - ABZR87_RS02435 0.86 +0.3
522,146 + -0.3
522,146 + -0.8
522,147 - -0.0
522,147 - +0.0
522,147 - -0.7
522,183 - -0.9
522,369 + ABZR87_RS02440 0.11 -2.2
522,369 + ABZR87_RS02440 0.11 +0.6
522,369 + ABZR87_RS02440 0.11 -2.8
522,369 + ABZR87_RS02440 0.11 -2.2
522,370 - ABZR87_RS02440 0.11 -2.6
522,370 - ABZR87_RS02440 0.11 -2.0
522,370 - ABZR87_RS02440 0.11 -0.2
522,370 - ABZR87_RS02440 0.11 -3.1
522,462 + ABZR87_RS02440 0.23 -1.0
522,462 + ABZR87_RS02440 0.23 -1.0
522,462 + ABZR87_RS02440 0.23 -0.4
522,462 + ABZR87_RS02440 0.23 -0.7
522,462 + ABZR87_RS02440 0.23 -2.4
522,463 - ABZR87_RS02440 0.23 -2.0
522,463 - ABZR87_RS02440 0.23 -1.4
522,528 - ABZR87_RS02440 0.31 -3.5
522,528 - ABZR87_RS02440 0.31 -1.2
522,528 - ABZR87_RS02440 0.31 -0.9
522,528 - ABZR87_RS02440 0.31 -0.4
522,533 + ABZR87_RS02440 0.32 -2.1
522,534 - ABZR87_RS02440 0.32 -0.1
522,534 - ABZR87_RS02440 0.32 -1.8
522,585 + ABZR87_RS02440 0.38 +0.1
522,585 + ABZR87_RS02440 0.38 -0.5
522,586 - ABZR87_RS02440 0.38 -3.5
522,586 - ABZR87_RS02440 0.38 -1.5
522,586 - ABZR87_RS02440 0.38 -2.5
522,586 - ABZR87_RS02440 0.38 -2.0
522,586 - ABZR87_RS02440 0.38 -1.7
522,586 - ABZR87_RS02440 0.38 -1.3
522,630 + ABZR87_RS02440 0.44 -3.3
522,630 + ABZR87_RS02440 0.44 -2.1
522,630 + ABZR87_RS02440 0.44 -3.1
522,631 - ABZR87_RS02440 0.44 -0.2
522,631 - ABZR87_RS02440 0.44 -1.9
522,672 + ABZR87_RS02440 0.49 -0.4
522,673 - ABZR87_RS02440 0.49 -2.4
522,673 - ABZR87_RS02440 0.49 -1.9
522,705 + ABZR87_RS02440 0.53 -1.3
522,705 + ABZR87_RS02440 0.53 -2.9
522,705 + ABZR87_RS02440 0.53 -2.7
522,705 + ABZR87_RS02440 0.53 -1.5
522,705 + ABZR87_RS02440 0.53 -3.0
522,705 + ABZR87_RS02440 0.53 -1.9
522,705 + ABZR87_RS02440 0.53 -1.0
522,705 + ABZR87_RS02440 0.53 -1.7
522,705 + ABZR87_RS02440 0.53 -0.5
522,705 + ABZR87_RS02440 0.53 -1.2
522,706 - ABZR87_RS02440 0.53 -1.9
522,706 - ABZR87_RS02440 0.53 -0.5
522,706 - ABZR87_RS02440 0.53 -1.4
522,706 - ABZR87_RS02440 0.53 -2.6
522,750 + ABZR87_RS02440 0.59 -1.2
522,750 + ABZR87_RS02440 0.59 -1.2
522,751 - ABZR87_RS02440 0.59 -2.4
522,751 - ABZR87_RS02440 0.59 -2.1
522,751 - ABZR87_RS02440 0.59 -1.5
522,783 + ABZR87_RS02440 0.63 -0.1
522,783 + ABZR87_RS02440 0.63 -2.1
522,784 - ABZR87_RS02440 0.63 -1.5
522,942 + ABZR87_RS02440 0.83 -0.5
522,942 + ABZR87_RS02440 0.83 -1.5
523,295 + ABZR87_RS02445 0.30 -0.8
523,296 - ABZR87_RS02445 0.30 -1.8
523,531 + ABZR87_RS02445 0.76 -2.7
523,531 + ABZR87_RS02445 0.76 -2.7
523,531 + ABZR87_RS02445 0.76 -1.4
523,531 + ABZR87_RS02445 0.76 +0.3
523,532 - ABZR87_RS02445 0.76 -2.5
523,532 - ABZR87_RS02445 0.76 -2.9
523,532 - ABZR87_RS02445 0.76 -1.7
523,532 - ABZR87_RS02445 0.76 -1.0
523,532 - ABZR87_RS02445 0.76 -1.7
523,532 - ABZR87_RS02445 0.76 -1.3
523,913 - -1.3
523,929 + -2.8
523,930 - -2.5
523,930 - -2.1
523,930 - -0.8
523,930 - -1.5
523,930 - -2.2
523,930 - -1.5
523,939 + -1.0
523,939 + -2.1
523,940 - -0.1
523,940 - -0.3
523,943 + -1.9
523,943 + +1.9
523,944 - +0.5
524,000 + -1.6
524,001 - +0.0
524,001 - +0.0
524,001 - -1.2
524,001 - +0.3
524,001 - -0.9
524,024 + -2.1
524,025 - ABZR87_RS02455 0.10 +0.3
524,043 + ABZR87_RS02455 0.15 -0.5
524,043 + ABZR87_RS02455 0.15 +0.3
524,044 - ABZR87_RS02455 0.15 +0.7
524,044 - ABZR87_RS02455 0.15 +0.8
524,044 - ABZR87_RS02455 0.15 +0.3
524,044 - ABZR87_RS02455 0.15 +0.7
524,048 + ABZR87_RS02455 0.16 -0.1
524,048 + ABZR87_RS02455 0.16 -0.7
524,048 + ABZR87_RS02455 0.16 -3.8
524,048 + ABZR87_RS02455 0.16 -1.7
524,049 - ABZR87_RS02455 0.17 -0.4

Or see this region's nucleotide sequence