Experiment: no_plant_soil sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01885 and ABZR87_RS01890 are separated by 73 nucleotides ABZR87_RS01890 and ABZR87_RS01895 are separated by 251 nucleotides
ABZR87_RS01885: ABZR87_RS01885 - bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ, at 398,056 to 399,285
_RS01885
ABZR87_RS01890: ABZR87_RS01890 - preprotein translocase subunit SecA, at 399,359 to 402,163
_RS01890
ABZR87_RS01895: ABZR87_RS01895 - M23 family metallopeptidase, at 402,415 to 403,377
_RS01895
Position (kb) 399
400
401
402
403 Strain fitness (log2 ratio) -1
0
1 at 398.376 kb on - strand, within ABZR87_RS01885 at 398.516 kb on + strand, within ABZR87_RS01885 at 398.516 kb on + strand, within ABZR87_RS01885 at 398.517 kb on - strand, within ABZR87_RS01885 at 398.806 kb on + strand, within ABZR87_RS01885 at 398.807 kb on - strand, within ABZR87_RS01885 at 399.567 kb on + strand at 399.567 kb on + strand at 399.568 kb on - strand at 399.568 kb on - strand at 402.266 kb on + strand at 402.266 kb on + strand at 402.267 kb on - strand at 402.267 kb on - strand at 402.267 kb on - strand at 402.267 kb on - strand at 402.267 kb on - strand at 402.267 kb on - strand at 402.665 kb on + strand, within ABZR87_RS01895 at 402.665 kb on + strand, within ABZR87_RS01895 at 402.666 kb on - strand, within ABZR87_RS01895 at 402.666 kb on - strand, within ABZR87_RS01895 at 402.666 kb on - strand, within ABZR87_RS01895 at 402.703 kb on - strand, within ABZR87_RS01895 at 402.713 kb on + strand, within ABZR87_RS01895 at 402.713 kb on + strand, within ABZR87_RS01895 at 402.761 kb on - strand, within ABZR87_RS01895 at 402.761 kb on - strand, within ABZR87_RS01895 at 402.860 kb on + strand, within ABZR87_RS01895 at 402.945 kb on - strand, within ABZR87_RS01895
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 2; outgrowth in LB remove 398,376 - ABZR87_RS01885 0.26 -1.2 398,516 + ABZR87_RS01885 0.37 -1.2 398,516 + ABZR87_RS01885 0.37 +0.4 398,517 - ABZR87_RS01885 0.37 -1.7 398,806 + ABZR87_RS01885 0.61 +0.4 398,807 - ABZR87_RS01885 0.61 -1.4 399,567 + -1.0 399,567 + -0.0 399,568 - +0.2 399,568 - +1.0 402,266 + -0.7 402,266 + -1.6 402,267 - -0.3 402,267 - +0.1 402,267 - -0.3 402,267 - +0.2 402,267 - -1.3 402,267 - -0.5 402,665 + ABZR87_RS01895 0.26 +0.7 402,665 + ABZR87_RS01895 0.26 +0.1 402,666 - ABZR87_RS01895 0.26 -0.7 402,666 - ABZR87_RS01895 0.26 -0.5 402,666 - ABZR87_RS01895 0.26 +0.3 402,703 - ABZR87_RS01895 0.30 -0.2 402,713 + ABZR87_RS01895 0.31 -0.5 402,713 + ABZR87_RS01895 0.31 +0.4 402,761 - ABZR87_RS01895 0.36 +1.1 402,761 - ABZR87_RS01895 0.36 +1.2 402,860 + ABZR87_RS01895 0.46 +0.6 402,945 - ABZR87_RS01895 0.55 +0.1
Or see this region's nucleotide sequence