Experiment: no_plant_soil sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01690 and ABZR87_RS01695 are separated by 132 nucleotides
ABZR87_RS01690: ABZR87_RS01690 - collagen-like triple helix repeat-containing protein, at 354,942 to 355,742
_RS01690
ABZR87_RS01695: ABZR87_RS01695 - collagen-like triple helix repeat-containing protein, at 355,875 to 357,032
_RS01695
Position (kb) 354
355
356 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.125 kb on + strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.126 kb on - strand at 354.169 kb on + strand at 354.169 kb on + strand at 354.170 kb on - strand at 354.201 kb on + strand at 354.202 kb on - strand at 354.202 kb on - strand at 354.202 kb on - strand at 354.583 kb on - strand at 354.590 kb on + strand at 354.590 kb on + strand at 354.590 kb on + strand at 354.590 kb on + strand at 354.591 kb on - strand at 354.591 kb on - strand at 354.604 kb on + strand at 354.927 kb on + strand at 354.928 kb on - strand at 355.505 kb on + strand, within ABZR87_RS01690 at 355.679 kb on + strand at 355.679 kb on + strand at 355.679 kb on + strand at 355.679 kb on + strand at 355.679 kb on + strand at 355.740 kb on + strand at 355.741 kb on - strand at 355.741 kb on - strand at 355.741 kb on - strand at 355.741 kb on - strand at 355.741 kb on - strand at 355.754 kb on + strand at 355.755 kb on - strand at 355.755 kb on - strand at 355.795 kb on + strand at 355.839 kb on + strand at 355.859 kb on + strand at 355.859 kb on + strand at 355.860 kb on - strand at 355.860 kb on - strand at 355.860 kb on - strand at 355.860 kb on - strand at 355.860 kb on - strand at 356.015 kb on + strand, within ABZR87_RS01695 at 356.015 kb on + strand, within ABZR87_RS01695 at 356.015 kb on + strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.016 kb on - strand, within ABZR87_RS01695 at 356.622 kb on - strand, within ABZR87_RS01695 at 356.622 kb on - strand, within ABZR87_RS01695
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 2; outgrowth in LB remove 354,125 + +0.7 354,125 + +1.2 354,125 + +1.2 354,125 + +1.0 354,125 + +1.3 354,125 + +0.4 354,125 + +0.6 354,125 + +0.5 354,126 - +0.6 354,126 - +0.1 354,126 - +0.2 354,126 - -0.0 354,126 - +0.7 354,126 - +0.0 354,126 - -1.1 354,126 - -2.0 354,169 + +0.4 354,169 + +1.0 354,170 - -0.9 354,201 + +0.9 354,202 - +0.5 354,202 - -0.4 354,202 - +0.6 354,583 - -1.0 354,590 + +0.4 354,590 + -1.6 354,590 + +0.6 354,590 + -2.2 354,591 - -1.5 354,591 - -1.1 354,604 + +0.5 354,927 + -0.6 354,928 - -0.6 355,505 + ABZR87_RS01690 0.70 -1.2 355,679 + -1.6 355,679 + +0.2 355,679 + +0.5 355,679 + +0.4 355,679 + +1.0 355,740 + -0.9 355,741 - -0.9 355,741 - -2.8 355,741 - -0.1 355,741 - +2.4 355,741 - -0.2 355,754 + +0.6 355,755 - -0.0 355,755 - +1.4 355,795 + -1.4 355,839 + -1.4 355,859 + +0.1 355,859 + -0.3 355,860 - -1.6 355,860 - +0.1 355,860 - +1.1 355,860 - +0.4 355,860 - +0.2 356,015 + ABZR87_RS01695 0.12 +0.6 356,015 + ABZR87_RS01695 0.12 -2.5 356,015 + ABZR87_RS01695 0.12 -0.3 356,016 - ABZR87_RS01695 0.12 -0.0 356,016 - ABZR87_RS01695 0.12 +0.1 356,016 - ABZR87_RS01695 0.12 +2.1 356,016 - ABZR87_RS01695 0.12 -0.5 356,016 - ABZR87_RS01695 0.12 +0.3 356,016 - ABZR87_RS01695 0.12 +0.1 356,622 - ABZR87_RS01695 0.65 +1.3 356,622 - ABZR87_RS01695 0.65 -0.8
Or see this region's nucleotide sequence