Experiment: no_plant_soil sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01430 and ABZR87_RS01435 are separated by 314 nucleotides ABZR87_RS01435 and ABZR87_RS01440 are separated by 86 nucleotides
ABZR87_RS01430: ABZR87_RS01430 - LysR family transcriptional regulator, at 299,832 to 300,875
_RS01430
ABZR87_RS01435: ABZR87_RS01435 - type I glyceraldehyde-3-phosphate dehydrogenase, at 301,190 to 302,188
_RS01435
ABZR87_RS01440: ABZR87_RS01440 - transketolase, at 302,275 to 304,290
_RS01440
Position (kb) 301
302
303 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8 at 300.226 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.304 kb on + strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.305 kb on - strand, within ABZR87_RS01430 at 300.696 kb on - strand, within ABZR87_RS01430 at 300.696 kb on - strand, within ABZR87_RS01430 at 300.696 kb on - strand, within ABZR87_RS01430 at 300.808 kb on + strand at 300.808 kb on + strand at 300.808 kb on + strand at 300.808 kb on + strand at 300.808 kb on + strand at 300.809 kb on - strand at 300.809 kb on - strand at 300.809 kb on - strand at 300.809 kb on - strand at 300.809 kb on - strand at 300.972 kb on + strand at 300.972 kb on + strand at 300.975 kb on + strand at 300.976 kb on - strand at 300.976 kb on - strand at 300.989 kb on - strand at 300.989 kb on - strand at 301.045 kb on + strand at 301.110 kb on + strand at 301.111 kb on - strand at 301.112 kb on - strand at 301.192 kb on - strand at 301.192 kb on - strand at 301.192 kb on - strand at 301.192 kb on - strand at 301.192 kb on - strand at 301.192 kb on - strand at 302.230 kb on - strand at 302.276 kb on + strand at 302.277 kb on - strand at 302.277 kb on - strand at 302.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 2; outgrowth in LB remove 300,226 + ABZR87_RS01430 0.38 +6.5 300,304 + ABZR87_RS01430 0.45 +6.2 300,304 + ABZR87_RS01430 0.45 +6.7 300,304 + ABZR87_RS01430 0.45 +6.8 300,304 + ABZR87_RS01430 0.45 +6.9 300,304 + ABZR87_RS01430 0.45 +6.7 300,304 + ABZR87_RS01430 0.45 +6.6 300,305 - ABZR87_RS01430 0.45 +6.7 300,305 - ABZR87_RS01430 0.45 +6.6 300,305 - ABZR87_RS01430 0.45 +6.8 300,305 - ABZR87_RS01430 0.45 +6.8 300,305 - ABZR87_RS01430 0.45 +6.5 300,305 - ABZR87_RS01430 0.45 +6.1 300,696 - ABZR87_RS01430 0.83 +6.9 300,696 - ABZR87_RS01430 0.83 +6.8 300,696 - ABZR87_RS01430 0.83 +6.9 300,808 + +7.3 300,808 + +7.1 300,808 + +7.2 300,808 + +6.6 300,808 + +8.3 300,809 - +6.3 300,809 - +6.9 300,809 - +6.6 300,809 - +6.8 300,809 - +7.0 300,972 + +4.3 300,972 + +4.3 300,975 + +7.5 300,976 - -0.2 300,976 - -1.0 300,989 - -0.1 300,989 - -1.1 301,045 + +3.0 301,110 + +3.5 301,111 - -0.6 301,112 - +0.3 301,192 - +0.6 301,192 - +0.2 301,192 - +0.7 301,192 - -0.1 301,192 - -0.7 301,192 - +0.2 302,230 - +0.9 302,276 + +1.9 302,277 - +0.7 302,277 - +0.3 302,277 - -0.4
Or see this region's nucleotide sequence