Experiment: no_plant_soil sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00955 and ABZR87_RS00960 overlap by 4 nucleotides ABZR87_RS00960 and ABZR87_RS00965 overlap by 57 nucleotides ABZR87_RS00965 and ABZR87_RS00970 are separated by 150 nucleotides
ABZR87_RS00955: ABZR87_RS00955 - ABC transporter permease, at 189,533 to 190,240
_RS00955
ABZR87_RS00960: ABZR87_RS00960 - ATP-binding cassette domain-containing protein, at 190,237 to 190,935
_RS00960
ABZR87_RS00965: ABZR87_RS00965 - bifunctional anthranilate synthase component I family protein/class IV aminotransferase, at 190,879 to 192,777
_RS00965
ABZR87_RS00970: ABZR87_RS00970 - molecular chaperone DnaJ, at 192,928 to 194,076
_RS00970
Position (kb) 190
191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 190.220 kb on + strand at 190.220 kb on + strand at 190.221 kb on - strand at 190.221 kb on - strand at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.513 kb on + strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.532 kb on + strand, within ABZR87_RS00960 at 190.550 kb on - strand, within ABZR87_RS00960 at 190.880 kb on + strand at 190.880 kb on + strand at 190.880 kb on + strand at 190.881 kb on - strand at 190.881 kb on - strand at 190.881 kb on - strand at 190.881 kb on - strand at 190.934 kb on - strand at 190.945 kb on + strand at 190.946 kb on - strand at 190.946 kb on - strand at 190.946 kb on - strand at 191.210 kb on + strand, within ABZR87_RS00965 at 191.210 kb on + strand, within ABZR87_RS00965 at 191.210 kb on + strand, within ABZR87_RS00965 at 191.210 kb on + strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.335 kb on + strand, within ABZR87_RS00965 at 191.365 kb on + strand, within ABZR87_RS00965 at 191.366 kb on - strand, within ABZR87_RS00965 at 191.598 kb on - strand, within ABZR87_RS00965 at 191.598 kb on - strand, within ABZR87_RS00965 at 191.774 kb on + strand, within ABZR87_RS00965 at 191.774 kb on + strand, within ABZR87_RS00965 at 191.775 kb on - strand, within ABZR87_RS00965 at 191.775 kb on - strand, within ABZR87_RS00965 at 192.225 kb on - strand, within ABZR87_RS00965 at 192.258 kb on - strand, within ABZR87_RS00965 at 192.258 kb on - strand, within ABZR87_RS00965 at 192.299 kb on + strand, within ABZR87_RS00965 at 192.299 kb on + strand, within ABZR87_RS00965 at 192.300 kb on - strand, within ABZR87_RS00965 at 192.305 kb on + strand, within ABZR87_RS00965 at 192.305 kb on + strand, within ABZR87_RS00965 at 192.306 kb on - strand, within ABZR87_RS00965 at 192.306 kb on - strand, within ABZR87_RS00965 at 192.306 kb on - strand, within ABZR87_RS00965 at 192.317 kb on + strand, within ABZR87_RS00965 at 192.317 kb on + strand, within ABZR87_RS00965 at 192.318 kb on - strand, within ABZR87_RS00965 at 192.318 kb on - strand, within ABZR87_RS00965 at 192.318 kb on - strand, within ABZR87_RS00965 at 192.318 kb on - strand, within ABZR87_RS00965 at 192.318 kb on - strand, within ABZR87_RS00965 at 192.366 kb on + strand, within ABZR87_RS00965 at 192.367 kb on - strand, within ABZR87_RS00965 at 192.367 kb on - strand, within ABZR87_RS00965 at 192.367 kb on - strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.369 kb on - strand, within ABZR87_RS00965 at 192.369 kb on - strand, within ABZR87_RS00965 at 192.369 kb on - strand, within ABZR87_RS00965 at 192.369 kb on - strand, within ABZR87_RS00965 at 192.369 kb on - strand, within ABZR87_RS00965 at 192.378 kb on - strand, within ABZR87_RS00965 at 192.378 kb on - strand, within ABZR87_RS00965 at 192.579 kb on - strand, within ABZR87_RS00965 at 192.680 kb on + strand at 192.680 kb on + strand at 192.680 kb on + strand at 192.681 kb on - strand at 192.681 kb on - strand at 192.681 kb on - strand at 192.681 kb on - strand at 192.689 kb on + strand at 192.808 kb on + strand at 192.808 kb on + strand at 192.808 kb on + strand at 192.809 kb on - strand at 192.809 kb on - strand at 192.809 kb on - strand at 192.827 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.866 kb on - strand at 192.866 kb on - strand at 192.866 kb on - strand at 192.866 kb on - strand at 192.866 kb on - strand at 192.866 kb on - strand at 192.866 kb on - strand at 192.874 kb on - strand at 192.883 kb on - strand at 192.911 kb on + strand at 192.917 kb on + strand at 192.917 kb on + strand at 192.918 kb on - strand at 192.918 kb on - strand at 192.929 kb on + strand at 192.929 kb on + strand at 192.930 kb on - strand at 192.930 kb on - strand at 192.930 kb on - strand at 192.949 kb on + strand at 192.950 kb on - strand at 192.950 kb on - strand at 192.950 kb on - strand at 193.082 kb on + strand, within ABZR87_RS00970 at 193.082 kb on + strand, within ABZR87_RS00970 at 193.313 kb on + strand, within ABZR87_RS00970 at 193.313 kb on + strand, within ABZR87_RS00970 at 193.357 kb on - strand, within ABZR87_RS00970
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 2; outgrowth in LB remove 190,220 + -0.7 190,220 + -0.8 190,221 - -0.0 190,221 - -0.1 190,495 + ABZR87_RS00960 0.37 -0.3 190,495 + ABZR87_RS00960 0.37 -0.4 190,495 + ABZR87_RS00960 0.37 -0.5 190,495 + ABZR87_RS00960 0.37 +0.4 190,495 + ABZR87_RS00960 0.37 -0.9 190,495 + ABZR87_RS00960 0.37 +0.6 190,495 + ABZR87_RS00960 0.37 -1.7 190,495 + ABZR87_RS00960 0.37 +0.4 190,495 + ABZR87_RS00960 0.37 +0.2 190,495 + ABZR87_RS00960 0.37 -0.0 190,495 + ABZR87_RS00960 0.37 +0.1 190,496 - ABZR87_RS00960 0.37 -0.4 190,496 - ABZR87_RS00960 0.37 -1.2 190,496 - ABZR87_RS00960 0.37 -1.0 190,496 - ABZR87_RS00960 0.37 -0.3 190,496 - ABZR87_RS00960 0.37 -0.3 190,496 - ABZR87_RS00960 0.37 -1.0 190,513 + ABZR87_RS00960 0.39 -0.9 190,514 - ABZR87_RS00960 0.40 -0.8 190,514 - ABZR87_RS00960 0.40 -0.8 190,514 - ABZR87_RS00960 0.40 +0.3 190,514 - ABZR87_RS00960 0.40 -0.5 190,532 + ABZR87_RS00960 0.42 -1.6 190,550 - ABZR87_RS00960 0.45 -1.4 190,880 + +0.2 190,880 + -0.7 190,880 + -1.4 190,881 - +0.4 190,881 - -1.8 190,881 - +0.3 190,881 - -1.7 190,934 - -0.1 190,945 + -0.5 190,946 - -0.8 190,946 - -0.3 190,946 - -0.5 191,210 + ABZR87_RS00965 0.17 +1.9 191,210 + ABZR87_RS00965 0.17 -0.8 191,210 + ABZR87_RS00965 0.17 -0.3 191,210 + ABZR87_RS00965 0.17 +0.4 191,211 - ABZR87_RS00965 0.17 -0.4 191,211 - ABZR87_RS00965 0.17 +0.3 191,211 - ABZR87_RS00965 0.17 -0.5 191,211 - ABZR87_RS00965 0.17 -0.2 191,335 + ABZR87_RS00965 0.24 -0.4 191,365 + ABZR87_RS00965 0.26 -3.0 191,366 - ABZR87_RS00965 0.26 -0.4 191,598 - ABZR87_RS00965 0.38 -0.7 191,598 - ABZR87_RS00965 0.38 -0.1 191,774 + ABZR87_RS00965 0.47 -0.1 191,774 + ABZR87_RS00965 0.47 +0.1 191,775 - ABZR87_RS00965 0.47 -0.5 191,775 - ABZR87_RS00965 0.47 +1.2 192,225 - ABZR87_RS00965 0.71 +1.3 192,258 - ABZR87_RS00965 0.73 +0.5 192,258 - ABZR87_RS00965 0.73 +0.6 192,299 + ABZR87_RS00965 0.75 -0.3 192,299 + ABZR87_RS00965 0.75 +0.4 192,300 - ABZR87_RS00965 0.75 +0.3 192,305 + ABZR87_RS00965 0.75 +1.3 192,305 + ABZR87_RS00965 0.75 -1.7 192,306 - ABZR87_RS00965 0.75 -0.5 192,306 - ABZR87_RS00965 0.75 -2.5 192,306 - ABZR87_RS00965 0.75 -0.1 192,317 + ABZR87_RS00965 0.76 -0.0 192,317 + ABZR87_RS00965 0.76 +0.2 192,318 - ABZR87_RS00965 0.76 +0.4 192,318 - ABZR87_RS00965 0.76 -1.1 192,318 - ABZR87_RS00965 0.76 -0.3 192,318 - ABZR87_RS00965 0.76 -0.3 192,318 - ABZR87_RS00965 0.76 -0.4 192,366 + ABZR87_RS00965 0.78 +0.6 192,367 - ABZR87_RS00965 0.78 -0.8 192,367 - ABZR87_RS00965 0.78 -1.0 192,367 - ABZR87_RS00965 0.78 +0.2 192,368 + ABZR87_RS00965 0.78 +0.2 192,368 + ABZR87_RS00965 0.78 -0.6 192,368 + ABZR87_RS00965 0.78 +0.7 192,368 + ABZR87_RS00965 0.78 -0.1 192,368 + ABZR87_RS00965 0.78 -0.6 192,368 + ABZR87_RS00965 0.78 +0.3 192,368 + ABZR87_RS00965 0.78 -1.2 192,368 + ABZR87_RS00965 0.78 +0.4 192,368 + ABZR87_RS00965 0.78 -0.3 192,369 - ABZR87_RS00965 0.78 +0.8 192,369 - ABZR87_RS00965 0.78 +0.3 192,369 - ABZR87_RS00965 0.78 -0.0 192,369 - ABZR87_RS00965 0.78 -0.2 192,369 - ABZR87_RS00965 0.78 -0.7 192,378 - ABZR87_RS00965 0.79 +0.3 192,378 - ABZR87_RS00965 0.79 +0.6 192,579 - ABZR87_RS00965 0.90 +0.2 192,680 + +0.0 192,680 + -0.7 192,680 + -0.3 192,681 - +1.1 192,681 - +0.4 192,681 - +0.4 192,681 - +0.6 192,689 + -0.6 192,808 + -0.2 192,808 + +0.6 192,808 + -0.2 192,809 - +0.8 192,809 - +1.7 192,809 - +0.5 192,827 + +0.3 192,865 + +0.6 192,865 + +0.0 192,865 + +0.0 192,865 + +0.1 192,865 + +0.9 192,865 + -1.5 192,865 + -0.5 192,866 - +0.1 192,866 - -0.2 192,866 - +1.0 192,866 - +0.4 192,866 - -0.3 192,866 - +0.4 192,866 - -0.5 192,874 - -0.1 192,883 - -0.3 192,911 + -0.4 192,917 + +0.7 192,917 + +0.2 192,918 - +0.4 192,918 - +1.8 192,929 + -0.4 192,929 + -0.1 192,930 - -0.5 192,930 - -1.7 192,930 - -0.2 192,949 + +0.9 192,950 - -0.4 192,950 - +0.2 192,950 - +0.5 193,082 + ABZR87_RS00970 0.13 -0.6 193,082 + ABZR87_RS00970 0.13 +0.4 193,313 + ABZR87_RS00970 0.34 +3.0 193,313 + ABZR87_RS00970 0.34 +1.0 193,357 - ABZR87_RS00970 0.37 -1.4
Or see this region's nucleotide sequence