Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00950

Experiment: no_plant_soil sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00940 and ABZR87_RS00945 are separated by 29 nucleotidesABZR87_RS00945 and ABZR87_RS00950 are separated by 60 nucleotidesABZR87_RS00950 and ABZR87_RS00955 are separated by 11 nucleotidesABZR87_RS00955 and ABZR87_RS00960 overlap by 4 nucleotides ABZR87_RS00940: ABZR87_RS00940 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 187,453 to 187,968 _RS00940 ABZR87_RS00945: ABZR87_RS00945 - deoxynucleoside kinase, at 187,998 to 188,642 _RS00945 ABZR87_RS00950: ABZR87_RS00950 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 188,703 to 189,521 _RS00950 ABZR87_RS00955: ABZR87_RS00955 - ABC transporter permease, at 189,533 to 190,240 _RS00955 ABZR87_RS00960: ABZR87_RS00960 - ATP-binding cassette domain-containing protein, at 190,237 to 190,935 _RS00960 Position (kb) 188 189 190Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 188.142 kb on + strand, within ABZR87_RS00945at 188.142 kb on + strand, within ABZR87_RS00945at 188.143 kb on - strand, within ABZR87_RS00945at 188.143 kb on - strand, within ABZR87_RS00945at 188.160 kb on + strand, within ABZR87_RS00945at 188.322 kb on + strand, within ABZR87_RS00945at 188.322 kb on + strand, within ABZR87_RS00945at 188.322 kb on + strand, within ABZR87_RS00945at 188.322 kb on + strand, within ABZR87_RS00945at 188.322 kb on + strand, within ABZR87_RS00945at 188.323 kb on - strand, within ABZR87_RS00945at 188.323 kb on - strand, within ABZR87_RS00945at 188.436 kb on + strand, within ABZR87_RS00945at 188.436 kb on + strand, within ABZR87_RS00945at 188.436 kb on + strand, within ABZR87_RS00945at 188.460 kb on + strand, within ABZR87_RS00945at 188.460 kb on + strand, within ABZR87_RS00945at 188.461 kb on - strand, within ABZR87_RS00945at 188.461 kb on - strand, within ABZR87_RS00945at 188.502 kb on + strand, within ABZR87_RS00945at 188.502 kb on + strand, within ABZR87_RS00945at 188.502 kb on + strand, within ABZR87_RS00945at 188.503 kb on - strand, within ABZR87_RS00945at 188.505 kb on + strand, within ABZR87_RS00945at 188.505 kb on + strand, within ABZR87_RS00945at 188.505 kb on + strand, within ABZR87_RS00945at 188.505 kb on + strand, within ABZR87_RS00945at 188.505 kb on + strand, within ABZR87_RS00945at 188.505 kb on + strand, within ABZR87_RS00945at 188.506 kb on - strand, within ABZR87_RS00945at 188.506 kb on - strand, within ABZR87_RS00945at 188.506 kb on - strand, within ABZR87_RS00945at 188.506 kb on - strand, within ABZR87_RS00945at 188.506 kb on - strand, within ABZR87_RS00945at 188.506 kb on - strand, within ABZR87_RS00945at 188.709 kb on + strandat 188.709 kb on + strandat 188.709 kb on + strandat 189.674 kb on + strand, within ABZR87_RS00955at 189.674 kb on + strand, within ABZR87_RS00955at 189.674 kb on + strand, within ABZR87_RS00955at 189.675 kb on - strand, within ABZR87_RS00955at 189.675 kb on - strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.773 kb on + strand, within ABZR87_RS00955at 189.774 kb on - strand, within ABZR87_RS00955at 189.774 kb on - strand, within ABZR87_RS00955at 189.774 kb on - strand, within ABZR87_RS00955at 190.220 kb on + strandat 190.220 kb on + strandat 190.221 kb on - strandat 190.221 kb on - strandat 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.495 kb on + strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.496 kb on - strand, within ABZR87_RS00960at 190.513 kb on + strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960at 190.514 kb on - strand, within ABZR87_RS00960

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_soil sample 2; outgrowth in LB
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188,142 + ABZR87_RS00945 0.22 +0.5
188,142 + ABZR87_RS00945 0.22 +0.0
188,143 - ABZR87_RS00945 0.22 -0.4
188,143 - ABZR87_RS00945 0.22 +0.0
188,160 + ABZR87_RS00945 0.25 -1.7
188,322 + ABZR87_RS00945 0.50 +0.6
188,322 + ABZR87_RS00945 0.50 +0.5
188,322 + ABZR87_RS00945 0.50 +0.0
188,322 + ABZR87_RS00945 0.50 -0.0
188,322 + ABZR87_RS00945 0.50 -0.7
188,323 - ABZR87_RS00945 0.50 +0.3
188,323 - ABZR87_RS00945 0.50 +0.5
188,436 + ABZR87_RS00945 0.68 +0.1
188,436 + ABZR87_RS00945 0.68 -0.4
188,436 + ABZR87_RS00945 0.68 -0.9
188,460 + ABZR87_RS00945 0.72 -0.0
188,460 + ABZR87_RS00945 0.72 +0.6
188,461 - ABZR87_RS00945 0.72 -0.2
188,461 - ABZR87_RS00945 0.72 +0.3
188,502 + ABZR87_RS00945 0.78 +2.0
188,502 + ABZR87_RS00945 0.78 -0.9
188,502 + ABZR87_RS00945 0.78 -1.6
188,503 - ABZR87_RS00945 0.78 -0.2
188,505 + ABZR87_RS00945 0.79 +1.0
188,505 + ABZR87_RS00945 0.79 +1.4
188,505 + ABZR87_RS00945 0.79 -0.3
188,505 + ABZR87_RS00945 0.79 +0.4
188,505 + ABZR87_RS00945 0.79 -0.6
188,505 + ABZR87_RS00945 0.79 +0.4
188,506 - ABZR87_RS00945 0.79 +0.4
188,506 - ABZR87_RS00945 0.79 -0.1
188,506 - ABZR87_RS00945 0.79 +0.2
188,506 - ABZR87_RS00945 0.79 +0.6
188,506 - ABZR87_RS00945 0.79 -1.2
188,506 - ABZR87_RS00945 0.79 -1.0
188,709 + -2.2
188,709 + -0.6
188,709 + -0.0
189,674 + ABZR87_RS00955 0.20 -1.0
189,674 + ABZR87_RS00955 0.20 +0.2
189,674 + ABZR87_RS00955 0.20 -0.4
189,675 - ABZR87_RS00955 0.20 -2.0
189,675 - ABZR87_RS00955 0.20 -0.9
189,773 + ABZR87_RS00955 0.34 -0.6
189,773 + ABZR87_RS00955 0.34 -0.7
189,773 + ABZR87_RS00955 0.34 -0.3
189,773 + ABZR87_RS00955 0.34 -0.3
189,773 + ABZR87_RS00955 0.34 +0.8
189,773 + ABZR87_RS00955 0.34 -2.8
189,773 + ABZR87_RS00955 0.34 -2.4
189,774 - ABZR87_RS00955 0.34 +0.0
189,774 - ABZR87_RS00955 0.34 -2.5
189,774 - ABZR87_RS00955 0.34 +0.8
190,220 + -0.7
190,220 + -0.8
190,221 - -0.0
190,221 - -0.1
190,495 + ABZR87_RS00960 0.37 -0.3
190,495 + ABZR87_RS00960 0.37 -0.4
190,495 + ABZR87_RS00960 0.37 -0.5
190,495 + ABZR87_RS00960 0.37 +0.4
190,495 + ABZR87_RS00960 0.37 -0.9
190,495 + ABZR87_RS00960 0.37 +0.6
190,495 + ABZR87_RS00960 0.37 -1.7
190,495 + ABZR87_RS00960 0.37 +0.4
190,495 + ABZR87_RS00960 0.37 +0.2
190,495 + ABZR87_RS00960 0.37 -0.0
190,495 + ABZR87_RS00960 0.37 +0.1
190,496 - ABZR87_RS00960 0.37 -0.4
190,496 - ABZR87_RS00960 0.37 -1.2
190,496 - ABZR87_RS00960 0.37 -1.0
190,496 - ABZR87_RS00960 0.37 -0.3
190,496 - ABZR87_RS00960 0.37 -0.3
190,496 - ABZR87_RS00960 0.37 -1.0
190,513 + ABZR87_RS00960 0.39 -0.9
190,514 - ABZR87_RS00960 0.40 -0.8
190,514 - ABZR87_RS00960 0.40 -0.8
190,514 - ABZR87_RS00960 0.40 +0.3
190,514 - ABZR87_RS00960 0.40 -0.5

Or see this region's nucleotide sequence