Experiment: no_plant_soil sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00840 and ABZR87_RS00845 are separated by 369 nucleotides ABZR87_RS00845 and ABZR87_RS00850 are separated by 142 nucleotides ABZR87_RS00850 and ABZR87_RS00855 are separated by 315 nucleotides
ABZR87_RS00840: ABZR87_RS00840 - ornithine carbamoyltransferase, at 168,984 to 169,910
_RS00840
ABZR87_RS00845: ABZR87_RS00845 - DUF3579 domain-containing protein, at 170,280 to 170,603
_RS00845
ABZR87_RS00850: ABZR87_RS00850 - 30S ribosomal protein S20, at 170,746 to 171,012
_RS00850
ABZR87_RS00855: ABZR87_RS00855 - murein biosynthesis integral membrane protein MurJ, at 171,328 to 172,881
_RS00855
Position (kb) 170
171 Strain fitness (log2 ratio) -1
0
1
2
3 at 169.342 kb on + strand, within ABZR87_RS00840 at 169.798 kb on + strand, within ABZR87_RS00840 at 169.843 kb on + strand at 169.843 kb on + strand at 169.844 kb on - strand at 169.844 kb on - strand at 169.844 kb on - strand at 169.850 kb on - strand at 169.882 kb on + strand at 169.911 kb on - strand at 169.911 kb on - strand at 169.957 kb on - strand at 170.003 kb on + strand at 170.003 kb on + strand at 170.052 kb on - strand at 170.056 kb on + strand at 170.056 kb on + strand at 170.056 kb on + strand at 170.090 kb on + strand at 170.090 kb on + strand at 170.090 kb on + strand at 170.090 kb on + strand at 170.091 kb on - strand at 170.091 kb on - strand at 170.092 kb on + strand at 170.092 kb on + strand at 170.097 kb on + strand at 170.098 kb on - strand at 170.099 kb on + strand at 170.100 kb on - strand at 170.103 kb on - strand at 170.142 kb on - strand at 170.557 kb on + strand, within ABZR87_RS00845 at 170.557 kb on + strand, within ABZR87_RS00845 at 170.557 kb on + strand, within ABZR87_RS00845 at 170.557 kb on + strand, within ABZR87_RS00845 at 170.557 kb on + strand, within ABZR87_RS00845 at 170.557 kb on + strand, within ABZR87_RS00845 at 170.558 kb on - strand, within ABZR87_RS00845 at 170.558 kb on - strand, within ABZR87_RS00845 at 170.558 kb on - strand, within ABZR87_RS00845 at 170.558 kb on - strand, within ABZR87_RS00845 at 170.747 kb on + strand at 170.747 kb on + strand at 170.747 kb on + strand at 170.748 kb on - strand at 170.748 kb on - strand at 171.200 kb on + strand at 171.200 kb on + strand at 171.201 kb on - strand at 171.201 kb on - strand at 171.201 kb on - strand at 171.202 kb on + strand at 171.202 kb on + strand at 171.202 kb on + strand at 171.203 kb on - strand at 171.203 kb on - strand at 171.203 kb on - strand at 171.203 kb on - strand at 171.203 kb on - strand at 171.205 kb on + strand at 171.205 kb on + strand at 171.205 kb on + strand at 171.205 kb on + strand at 171.206 kb on - strand at 171.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_soil sample 2; outgrowth in LB remove 169,342 + ABZR87_RS00840 0.39 +2.0 169,798 + ABZR87_RS00840 0.88 -0.0 169,843 + +2.0 169,843 + +1.4 169,844 - +1.4 169,844 - +1.0 169,844 - +3.0 169,850 - +0.4 169,882 + +2.0 169,911 - +0.0 169,911 - +0.5 169,957 - +1.3 170,003 + -0.2 170,003 + +0.2 170,052 - -1.0 170,056 + -0.9 170,056 + -0.7 170,056 + -0.5 170,090 + -0.6 170,090 + +0.5 170,090 + +0.2 170,090 + -0.4 170,091 - -0.2 170,091 - +1.8 170,092 + -0.3 170,092 + +0.7 170,097 + +0.2 170,098 - -0.5 170,099 + -0.5 170,100 - +0.8 170,103 - -1.0 170,142 - -0.9 170,557 + ABZR87_RS00845 0.85 -0.4 170,557 + ABZR87_RS00845 0.85 -0.5 170,557 + ABZR87_RS00845 0.85 +0.4 170,557 + ABZR87_RS00845 0.85 -1.7 170,557 + ABZR87_RS00845 0.85 -0.5 170,557 + ABZR87_RS00845 0.85 -0.8 170,558 - ABZR87_RS00845 0.86 -0.5 170,558 - ABZR87_RS00845 0.86 +0.6 170,558 - ABZR87_RS00845 0.86 -1.0 170,558 - ABZR87_RS00845 0.86 +2.0 170,747 + +0.8 170,747 + -0.1 170,747 + -0.3 170,748 - +0.5 170,748 - -0.3 171,200 + +0.2 171,200 + -0.2 171,201 - -0.1 171,201 - +0.3 171,201 - -0.5 171,202 + +0.1 171,202 + -0.7 171,202 + +0.1 171,203 - +0.1 171,203 - -0.5 171,203 - +0.3 171,203 - -1.6 171,203 - -0.3 171,205 + +1.5 171,205 + -0.4 171,205 + -0.2 171,205 + +2.3 171,206 - -1.5 171,206 - -0.6
Or see this region's nucleotide sequence