Experiment: Tetracycline 0.024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS21520 and ABZR86_RS21525 are separated by 202 nucleotides ABZR86_RS21525 and ABZR86_RS21530 are separated by 31 nucleotides
ABZR86_RS21520: ABZR86_RS21520 - penicillin acylase family protein, at 269,747 to 272,167
_RS21520
ABZR86_RS21525: ABZR86_RS21525 - DUF4019 domain-containing protein, at 272,370 to 272,864
_RS21525
ABZR86_RS21530: ABZR86_RS21530 - type II toxin-antitoxin system HipA family toxin, at 272,896 to 274,206
_RS21530
Position (kb) 272
273 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 271.572 kb on - strand, within ABZR86_RS21520 at 271.581 kb on + strand, within ABZR86_RS21520 at 271.581 kb on + strand, within ABZR86_RS21520 at 271.614 kb on + strand, within ABZR86_RS21520 at 271.649 kb on + strand, within ABZR86_RS21520 at 271.650 kb on - strand, within ABZR86_RS21520 at 271.650 kb on - strand, within ABZR86_RS21520 at 272.063 kb on + strand at 272.064 kb on - strand at 272.066 kb on + strand at 272.066 kb on + strand at 272.066 kb on + strand at 272.067 kb on - strand at 272.067 kb on - strand at 272.228 kb on + strand at 272.228 kb on + strand at 272.228 kb on + strand at 272.229 kb on - strand at 272.229 kb on - strand at 272.229 kb on - strand at 272.307 kb on + strand at 272.307 kb on + strand at 272.307 kb on + strand at 272.308 kb on - strand at 272.308 kb on - strand at 272.308 kb on - strand at 272.308 kb on - strand at 272.308 kb on - strand at 272.308 kb on - strand at 272.308 kb on - strand at 272.308 kb on - strand at 272.308 kb on - strand at 272.369 kb on + strand at 272.369 kb on + strand at 272.369 kb on + strand at 272.369 kb on + strand at 272.369 kb on + strand at 272.369 kb on + strand at 272.369 kb on + strand at 272.370 kb on - strand at 272.370 kb on - strand at 272.370 kb on - strand at 272.586 kb on + strand, within ABZR86_RS21525 at 272.587 kb on - strand, within ABZR86_RS21525 at 272.587 kb on - strand, within ABZR86_RS21525 at 272.587 kb on - strand, within ABZR86_RS21525 at 272.782 kb on - strand, within ABZR86_RS21525 at 272.782 kb on - strand, within ABZR86_RS21525 at 272.782 kb on - strand, within ABZR86_RS21525 at 272.782 kb on - strand, within ABZR86_RS21525 at 273.227 kb on + strand, within ABZR86_RS21530 at 273.227 kb on + strand, within ABZR86_RS21530 at 273.228 kb on - strand, within ABZR86_RS21530 at 273.480 kb on + strand, within ABZR86_RS21530 at 273.480 kb on + strand, within ABZR86_RS21530 at 273.480 kb on + strand, within ABZR86_RS21530 at 273.480 kb on + strand, within ABZR86_RS21530 at 273.481 kb on - strand, within ABZR86_RS21530 at 273.481 kb on - strand, within ABZR86_RS21530 at 273.481 kb on - strand, within ABZR86_RS21530 at 273.481 kb on - strand, within ABZR86_RS21530 at 273.481 kb on - strand, within ABZR86_RS21530 at 273.481 kb on - strand, within ABZR86_RS21530 at 273.483 kb on + strand, within ABZR86_RS21530 at 273.483 kb on + strand, within ABZR86_RS21530 at 273.483 kb on + strand, within ABZR86_RS21530 at 273.483 kb on + strand, within ABZR86_RS21530 at 273.483 kb on + strand, within ABZR86_RS21530 at 273.483 kb on + strand, within ABZR86_RS21530 at 273.483 kb on + strand, within ABZR86_RS21530 at 273.483 kb on + strand, within ABZR86_RS21530 at 273.484 kb on - strand, within ABZR86_RS21530 at 273.484 kb on - strand, within ABZR86_RS21530 at 273.625 kb on - strand, within ABZR86_RS21530 at 273.625 kb on - strand, within ABZR86_RS21530 at 273.625 kb on - strand, within ABZR86_RS21530 at 273.625 kb on - strand, within ABZR86_RS21530
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.024 mg/ml remove 271,572 - ABZR86_RS21520 0.75 -0.0 271,581 + ABZR86_RS21520 0.76 -3.2 271,581 + ABZR86_RS21520 0.76 -0.5 271,614 + ABZR86_RS21520 0.77 +1.2 271,649 + ABZR86_RS21520 0.79 +0.0 271,650 - ABZR86_RS21520 0.79 -0.3 271,650 - ABZR86_RS21520 0.79 -0.1 272,063 + -1.9 272,064 - -0.9 272,066 + +0.6 272,066 + +0.7 272,066 + -0.1 272,067 - -0.1 272,067 - -0.1 272,228 + +0.3 272,228 + -0.6 272,228 + +0.0 272,229 - -0.5 272,229 - -1.0 272,229 - -0.6 272,307 + +0.5 272,307 + +0.7 272,307 + +0.1 272,308 - -0.8 272,308 - -1.2 272,308 - +0.3 272,308 - -2.2 272,308 - +1.3 272,308 - +0.6 272,308 - -0.4 272,308 - +0.2 272,308 - -1.4 272,369 + +1.0 272,369 + +0.2 272,369 + -0.8 272,369 + +0.8 272,369 + -0.2 272,369 + +0.7 272,369 + -0.4 272,370 - -0.3 272,370 - +0.6 272,370 - -0.1 272,586 + ABZR86_RS21525 0.44 -0.7 272,587 - ABZR86_RS21525 0.44 -1.2 272,587 - ABZR86_RS21525 0.44 -1.0 272,587 - ABZR86_RS21525 0.44 +0.4 272,782 - ABZR86_RS21525 0.83 -0.1 272,782 - ABZR86_RS21525 0.83 +0.8 272,782 - ABZR86_RS21525 0.83 +0.1 272,782 - ABZR86_RS21525 0.83 +2.2 273,227 + ABZR86_RS21530 0.25 +0.5 273,227 + ABZR86_RS21530 0.25 +0.2 273,228 - ABZR86_RS21530 0.25 +0.7 273,480 + ABZR86_RS21530 0.45 +0.5 273,480 + ABZR86_RS21530 0.45 -0.6 273,480 + ABZR86_RS21530 0.45 -0.5 273,480 + ABZR86_RS21530 0.45 -0.0 273,481 - ABZR86_RS21530 0.45 +0.9 273,481 - ABZR86_RS21530 0.45 -0.1 273,481 - ABZR86_RS21530 0.45 -0.5 273,481 - ABZR86_RS21530 0.45 -0.3 273,481 - ABZR86_RS21530 0.45 +0.7 273,481 - ABZR86_RS21530 0.45 -0.8 273,483 + ABZR86_RS21530 0.45 -0.1 273,483 + ABZR86_RS21530 0.45 +0.2 273,483 + ABZR86_RS21530 0.45 -0.4 273,483 + ABZR86_RS21530 0.45 -2.7 273,483 + ABZR86_RS21530 0.45 +1.3 273,483 + ABZR86_RS21530 0.45 +0.6 273,483 + ABZR86_RS21530 0.45 -0.6 273,483 + ABZR86_RS21530 0.45 +1.8 273,484 - ABZR86_RS21530 0.45 -0.1 273,484 - ABZR86_RS21530 0.45 -0.5 273,625 - ABZR86_RS21530 0.56 -0.1 273,625 - ABZR86_RS21530 0.56 -0.0 273,625 - ABZR86_RS21530 0.56 -0.3 273,625 - ABZR86_RS21530 0.56 -0.5
Or see this region's nucleotide sequence