Experiment: Tetracycline 0.024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS21005 and ABZR86_RS21010 are separated by 172 nucleotides ABZR86_RS21010 and ABZR86_RS21015 are separated by 4 nucleotides ABZR86_RS21015 and ABZR86_RS21020 are separated by 118 nucleotides
ABZR86_RS21005: ABZR86_RS21005 - omptin family outer membrane protease, at 173,586 to 174,575
_RS21005
ABZR86_RS21010: ABZR86_RS21010 - hypothetical protein, at 174,748 to 175,326
_RS21010
ABZR86_RS21015: ABZR86_RS21015 - SDR family oxidoreductase, at 175,331 to 176,134
_RS21015
ABZR86_RS21020: ABZR86_RS21020 - ATP-binding protein, at 176,253 to 177,569
_RS21020
Position (kb) 175
176
177 Strain fitness (log2 ratio) -2
-1
0
1 at 174.399 kb on + strand, within ABZR86_RS21005 at 174.400 kb on - strand, within ABZR86_RS21005 at 174.400 kb on - strand, within ABZR86_RS21005 at 174.450 kb on + strand, within ABZR86_RS21005 at 174.451 kb on - strand, within ABZR86_RS21005 at 174.603 kb on + strand at 174.776 kb on - strand at 174.776 kb on - strand at 174.835 kb on + strand, within ABZR86_RS21010 at 174.836 kb on - strand, within ABZR86_RS21010 at 174.997 kb on + strand, within ABZR86_RS21010 at 174.997 kb on + strand, within ABZR86_RS21010 at 175.142 kb on + strand, within ABZR86_RS21010 at 175.142 kb on + strand, within ABZR86_RS21010 at 175.143 kb on - strand, within ABZR86_RS21010 at 175.143 kb on - strand, within ABZR86_RS21010 at 175.176 kb on + strand, within ABZR86_RS21010 at 175.279 kb on + strand at 175.351 kb on - strand at 175.351 kb on - strand at 175.653 kb on + strand, within ABZR86_RS21015 at 175.653 kb on + strand, within ABZR86_RS21015 at 175.654 kb on - strand, within ABZR86_RS21015 at 175.671 kb on + strand, within ABZR86_RS21015 at 175.671 kb on + strand, within ABZR86_RS21015 at 175.717 kb on + strand, within ABZR86_RS21015 at 175.767 kb on + strand, within ABZR86_RS21015 at 175.767 kb on + strand, within ABZR86_RS21015 at 175.767 kb on + strand, within ABZR86_RS21015 at 175.768 kb on - strand, within ABZR86_RS21015 at 175.955 kb on + strand, within ABZR86_RS21015 at 175.956 kb on - strand, within ABZR86_RS21015 at 175.956 kb on - strand, within ABZR86_RS21015 at 175.956 kb on - strand, within ABZR86_RS21015 at 176.071 kb on - strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.184 kb on - strand at 176.184 kb on - strand at 176.184 kb on - strand at 176.184 kb on - strand at 176.402 kb on - strand, within ABZR86_RS21020 at 176.441 kb on + strand, within ABZR86_RS21020 at 176.522 kb on - strand, within ABZR86_RS21020 at 176.635 kb on + strand, within ABZR86_RS21020 at 176.635 kb on + strand, within ABZR86_RS21020 at 176.636 kb on - strand, within ABZR86_RS21020 at 176.717 kb on - strand, within ABZR86_RS21020
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.024 mg/ml remove 174,399 + ABZR86_RS21005 0.82 +0.1 174,400 - ABZR86_RS21005 0.82 -1.4 174,400 - ABZR86_RS21005 0.82 -0.1 174,450 + ABZR86_RS21005 0.87 +1.2 174,451 - ABZR86_RS21005 0.87 -0.7 174,603 + -0.6 174,776 - -0.1 174,776 - -1.1 174,835 + ABZR86_RS21010 0.15 +0.1 174,836 - ABZR86_RS21010 0.15 +1.2 174,997 + ABZR86_RS21010 0.43 -0.2 174,997 + ABZR86_RS21010 0.43 +0.3 175,142 + ABZR86_RS21010 0.68 +0.3 175,142 + ABZR86_RS21010 0.68 +0.2 175,143 - ABZR86_RS21010 0.68 -0.6 175,143 - ABZR86_RS21010 0.68 +1.1 175,176 + ABZR86_RS21010 0.74 +0.4 175,279 + +0.1 175,351 - -1.7 175,351 - +0.7 175,653 + ABZR86_RS21015 0.40 +0.7 175,653 + ABZR86_RS21015 0.40 +0.1 175,654 - ABZR86_RS21015 0.40 -0.3 175,671 + ABZR86_RS21015 0.42 +0.3 175,671 + ABZR86_RS21015 0.42 -0.1 175,717 + ABZR86_RS21015 0.48 -0.1 175,767 + ABZR86_RS21015 0.54 -0.7 175,767 + ABZR86_RS21015 0.54 +0.4 175,767 + ABZR86_RS21015 0.54 -0.7 175,768 - ABZR86_RS21015 0.54 -0.5 175,955 + ABZR86_RS21015 0.78 +0.1 175,956 - ABZR86_RS21015 0.78 +0.5 175,956 - ABZR86_RS21015 0.78 +0.0 175,956 - ABZR86_RS21015 0.78 +0.4 176,071 - -0.3 176,183 + +1.2 176,183 + +1.4 176,183 + +1.5 176,183 + +1.2 176,183 + -1.4 176,183 + +0.3 176,183 + +0.4 176,183 + -0.5 176,183 + +0.3 176,183 + +0.7 176,184 - -2.5 176,184 - +0.7 176,184 - -0.4 176,184 - -1.1 176,402 - ABZR86_RS21020 0.11 -0.3 176,441 + ABZR86_RS21020 0.14 -0.6 176,522 - ABZR86_RS21020 0.20 -0.7 176,635 + ABZR86_RS21020 0.29 +0.4 176,635 + ABZR86_RS21020 0.29 +0.2 176,636 - ABZR86_RS21020 0.29 +0.1 176,717 - ABZR86_RS21020 0.35 +1.1
Or see this region's nucleotide sequence