Experiment: Tetracycline 0.024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20360 and ABZR86_RS20365 overlap by 4 nucleotides ABZR86_RS20365 and ABZR86_RS20370 are separated by 88 nucleotides ABZR86_RS20370 and ABZR86_RS20375 are separated by 20 nucleotides
ABZR86_RS20360: ABZR86_RS20360 - ATP-binding protein, at 9,422 to 10,579
_RS20360
ABZR86_RS20365: ABZR86_RS20365 - response regulator transcription factor, at 10,576 to 11,238
_RS20365
ABZR86_RS20370: ABZR86_RS20370 - alpha/beta hydrolase, at 11,327 to 12,127
_RS20370
ABZR86_RS20375: ABZR86_RS20375 - nitrilase-related carbon-nitrogen hydrolase, at 12,148 to 13,575
_RS20375
Position (kb) 11
12
13 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 10.599 kb on - strand at 10.599 kb on - strand at 10.674 kb on + strand, within ABZR86_RS20365 at 10.675 kb on - strand, within ABZR86_RS20365 at 10.675 kb on - strand, within ABZR86_RS20365 at 10.703 kb on + strand, within ABZR86_RS20365 at 10.703 kb on + strand, within ABZR86_RS20365 at 10.703 kb on + strand, within ABZR86_RS20365 at 10.703 kb on + strand, within ABZR86_RS20365 at 10.704 kb on - strand, within ABZR86_RS20365 at 10.707 kb on + strand, within ABZR86_RS20365 at 10.707 kb on + strand, within ABZR86_RS20365 at 10.708 kb on - strand, within ABZR86_RS20365 at 10.708 kb on - strand, within ABZR86_RS20365 at 10.708 kb on - strand, within ABZR86_RS20365 at 11.031 kb on - strand, within ABZR86_RS20365 at 11.104 kb on - strand, within ABZR86_RS20365 at 11.106 kb on - strand, within ABZR86_RS20365 at 11.106 kb on - strand, within ABZR86_RS20365 at 11.234 kb on + strand at 11.234 kb on + strand at 11.625 kb on + strand, within ABZR86_RS20370 at 11.626 kb on - strand, within ABZR86_RS20370 at 11.931 kb on + strand, within ABZR86_RS20370 at 12.243 kb on - strand at 12.243 kb on - strand at 12.243 kb on - strand at 12.486 kb on - strand, within ABZR86_RS20375 at 12.564 kb on - strand, within ABZR86_RS20375 at 12.582 kb on - strand, within ABZR86_RS20375 at 12.941 kb on + strand, within ABZR86_RS20375 at 12.953 kb on + strand, within ABZR86_RS20375 at 12.953 kb on + strand, within ABZR86_RS20375
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.024 mg/ml remove 10,599 - -0.6 10,599 - -0.3 10,674 + ABZR86_RS20365 0.15 -1.4 10,675 - ABZR86_RS20365 0.15 +1.3 10,675 - ABZR86_RS20365 0.15 -0.2 10,703 + ABZR86_RS20365 0.19 -0.0 10,703 + ABZR86_RS20365 0.19 +0.7 10,703 + ABZR86_RS20365 0.19 -0.8 10,703 + ABZR86_RS20365 0.19 -0.5 10,704 - ABZR86_RS20365 0.19 -3.8 10,707 + ABZR86_RS20365 0.20 -1.4 10,707 + ABZR86_RS20365 0.20 +0.0 10,708 - ABZR86_RS20365 0.20 +0.1 10,708 - ABZR86_RS20365 0.20 +1.1 10,708 - ABZR86_RS20365 0.20 -0.8 11,031 - ABZR86_RS20365 0.69 -0.2 11,104 - ABZR86_RS20365 0.80 -0.5 11,106 - ABZR86_RS20365 0.80 +0.1 11,106 - ABZR86_RS20365 0.80 -1.2 11,234 + -0.8 11,234 + +0.3 11,625 + ABZR86_RS20370 0.37 -0.7 11,626 - ABZR86_RS20370 0.37 +0.7 11,931 + ABZR86_RS20370 0.75 +1.1 12,243 - -1.3 12,243 - +0.5 12,243 - -0.2 12,486 - ABZR86_RS20375 0.24 +1.5 12,564 - ABZR86_RS20375 0.29 -0.3 12,582 - ABZR86_RS20375 0.30 -0.1 12,941 + ABZR86_RS20375 0.56 +0.1 12,953 + ABZR86_RS20375 0.56 +0.6 12,953 + ABZR86_RS20375 0.56 +0.5
Or see this region's nucleotide sequence