Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS13530

Experiment: Tetracycline 0.024 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS13525 and ABZR86_RS13530 are separated by 78 nucleotidesABZR86_RS13530 and ABZR86_RS13535 are separated by 144 nucleotides ABZR86_RS13525: ABZR86_RS13525 - oxygen-dependent coproporphyrinogen oxidase, at 3,029,524 to 3,030,426 _RS13525 ABZR86_RS13530: ABZR86_RS13530 - YdcF family protein, at 3,030,505 to 3,031,215 _RS13530 ABZR86_RS13535: ABZR86_RS13535 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 3,031,360 to 3,032,544 _RS13535 Position (kb) 3030 3031 3032Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3030.462 kb on + strandat 3030.462 kb on + strandat 3030.462 kb on + strandat 3030.462 kb on + strandat 3030.462 kb on + strandat 3030.462 kb on + strandat 3030.462 kb on + strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.463 kb on - strandat 3030.506 kb on + strandat 3030.581 kb on + strand, within ABZR86_RS13530at 3030.581 kb on + strand, within ABZR86_RS13530at 3030.581 kb on + strand, within ABZR86_RS13530at 3030.581 kb on + strand, within ABZR86_RS13530at 3030.581 kb on + strand, within ABZR86_RS13530at 3030.581 kb on + strand, within ABZR86_RS13530at 3030.581 kb on + strand, within ABZR86_RS13530at 3030.581 kb on + strand, within ABZR86_RS13530at 3030.581 kb on + strand, within ABZR86_RS13530at 3030.581 kb on + strand, within ABZR86_RS13530at 3030.581 kb on + strand, within ABZR86_RS13530at 3030.582 kb on - strand, within ABZR86_RS13530at 3030.582 kb on - strand, within ABZR86_RS13530at 3030.582 kb on - strand, within ABZR86_RS13530at 3030.582 kb on - strand, within ABZR86_RS13530at 3030.582 kb on - strand, within ABZR86_RS13530at 3030.582 kb on - strand, within ABZR86_RS13530at 3030.582 kb on - strand, within ABZR86_RS13530at 3030.582 kb on - strand, within ABZR86_RS13530at 3030.582 kb on - strand, within ABZR86_RS13530at 3030.582 kb on - strand, within ABZR86_RS13530at 3030.582 kb on - strand, within ABZR86_RS13530at 3030.582 kb on - strand, within ABZR86_RS13530at 3030.707 kb on + strand, within ABZR86_RS13530at 3030.707 kb on + strand, within ABZR86_RS13530at 3030.977 kb on + strand, within ABZR86_RS13530at 3030.978 kb on - strand, within ABZR86_RS13530at 3030.978 kb on - strand, within ABZR86_RS13530at 3030.978 kb on - strand, within ABZR86_RS13530at 3031.255 kb on + strandat 3031.255 kb on + strandat 3031.255 kb on + strandat 3031.255 kb on + strandat 3031.255 kb on + strandat 3031.255 kb on + strandat 3031.255 kb on + strandat 3031.255 kb on + strandat 3031.256 kb on - strandat 3031.256 kb on - strandat 3031.256 kb on - strandat 3031.256 kb on - strandat 3031.275 kb on + strandat 3031.275 kb on + strandat 3031.275 kb on + strandat 3031.275 kb on + strandat 3031.275 kb on + strandat 3031.275 kb on + strandat 3031.275 kb on + strandat 3031.275 kb on + strandat 3031.275 kb on + strandat 3031.276 kb on - strandat 3031.276 kb on - strandat 3031.288 kb on + strandat 3031.288 kb on + strandat 3031.288 kb on + strandat 3031.288 kb on + strandat 3031.289 kb on - strandat 3031.289 kb on - strandat 3031.289 kb on - strandat 3031.296 kb on + strandat 3031.296 kb on + strandat 3031.296 kb on + strandat 3031.297 kb on - strandat 3031.297 kb on - strandat 3031.297 kb on - strandat 3031.297 kb on - strandat 3031.297 kb on - strandat 3031.297 kb on - strandat 3031.297 kb on - strandat 3031.297 kb on - strandat 3031.297 kb on - strandat 3031.297 kb on - strandat 3031.297 kb on - strandat 3031.297 kb on - strandat 3031.297 kb on - strandat 3031.336 kb on + strandat 3031.336 kb on + strandat 3031.384 kb on + strandat 3031.384 kb on + strandat 3031.384 kb on + strandat 3031.385 kb on - strandat 3031.385 kb on - strandat 3031.386 kb on + strandat 3031.386 kb on + strandat 3031.386 kb on + strandat 3031.387 kb on - strandat 3031.387 kb on - strandat 3031.387 kb on - strandat 3032.092 kb on + strand, within ABZR86_RS13535at 3032.209 kb on + strand, within ABZR86_RS13535at 3032.209 kb on + strand, within ABZR86_RS13535at 3032.209 kb on + strand, within ABZR86_RS13535at 3032.209 kb on + strand, within ABZR86_RS13535at 3032.209 kb on + strand, within ABZR86_RS13535at 3032.209 kb on + strand, within ABZR86_RS13535at 3032.209 kb on + strand, within ABZR86_RS13535at 3032.209 kb on + strand, within ABZR86_RS13535at 3032.210 kb on - strand, within ABZR86_RS13535at 3032.210 kb on - strand, within ABZR86_RS13535at 3032.210 kb on - strand, within ABZR86_RS13535at 3032.210 kb on - strand, within ABZR86_RS13535at 3032.210 kb on - strand, within ABZR86_RS13535at 3032.210 kb on - strand, within ABZR86_RS13535

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.024 mg/ml
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3,030,462 + +0.5
3,030,462 + -0.5
3,030,462 + -1.2
3,030,462 + -2.3
3,030,462 + +0.4
3,030,462 + +0.0
3,030,462 + -0.5
3,030,463 - -0.5
3,030,463 - -1.4
3,030,463 - -2.4
3,030,463 - +0.2
3,030,463 - +0.5
3,030,463 - -0.3
3,030,463 - -3.3
3,030,463 - +0.4
3,030,463 - +0.3
3,030,506 + -0.7
3,030,581 + ABZR86_RS13530 0.11 -0.5
3,030,581 + ABZR86_RS13530 0.11 -0.5
3,030,581 + ABZR86_RS13530 0.11 -0.3
3,030,581 + ABZR86_RS13530 0.11 -1.3
3,030,581 + ABZR86_RS13530 0.11 -0.3
3,030,581 + ABZR86_RS13530 0.11 -0.2
3,030,581 + ABZR86_RS13530 0.11 +1.1
3,030,581 + ABZR86_RS13530 0.11 -2.5
3,030,581 + ABZR86_RS13530 0.11 -0.2
3,030,581 + ABZR86_RS13530 0.11 -0.5
3,030,581 + ABZR86_RS13530 0.11 -1.6
3,030,582 - ABZR86_RS13530 0.11 -0.5
3,030,582 - ABZR86_RS13530 0.11 -0.1
3,030,582 - ABZR86_RS13530 0.11 -0.7
3,030,582 - ABZR86_RS13530 0.11 +0.3
3,030,582 - ABZR86_RS13530 0.11 +0.2
3,030,582 - ABZR86_RS13530 0.11 -1.0
3,030,582 - ABZR86_RS13530 0.11 -0.1
3,030,582 - ABZR86_RS13530 0.11 -0.4
3,030,582 - ABZR86_RS13530 0.11 -0.2
3,030,582 - ABZR86_RS13530 0.11 +0.7
3,030,582 - ABZR86_RS13530 0.11 +0.1
3,030,582 - ABZR86_RS13530 0.11 -0.7
3,030,707 + ABZR86_RS13530 0.28 -1.8
3,030,707 + ABZR86_RS13530 0.28 +0.0
3,030,977 + ABZR86_RS13530 0.66 -2.1
3,030,978 - ABZR86_RS13530 0.67 -0.0
3,030,978 - ABZR86_RS13530 0.67 -0.3
3,030,978 - ABZR86_RS13530 0.67 -0.7
3,031,255 + -1.6
3,031,255 + -2.6
3,031,255 + -3.2
3,031,255 + -0.3
3,031,255 + -2.8
3,031,255 + +0.4
3,031,255 + -1.0
3,031,255 + -3.0
3,031,256 - +0.0
3,031,256 - +0.6
3,031,256 - +0.4
3,031,256 - +0.8
3,031,275 + -0.5
3,031,275 + -0.3
3,031,275 + -1.4
3,031,275 + -0.1
3,031,275 + -1.6
3,031,275 + -1.7
3,031,275 + +0.5
3,031,275 + -0.1
3,031,275 + -0.8
3,031,276 - -0.4
3,031,276 - +0.6
3,031,288 + -2.4
3,031,288 + -1.0
3,031,288 + -0.9
3,031,288 + -1.6
3,031,289 - +0.1
3,031,289 - +1.6
3,031,289 - -0.1
3,031,296 + -3.4
3,031,296 + +0.2
3,031,296 + -2.4
3,031,297 - +2.5
3,031,297 - -1.9
3,031,297 - +1.3
3,031,297 - +0.4
3,031,297 - +0.1
3,031,297 - +0.1
3,031,297 - -0.7
3,031,297 - +0.4
3,031,297 - +1.0
3,031,297 - -0.3
3,031,297 - +0.9
3,031,297 - +0.3
3,031,297 - +0.3
3,031,336 + +1.5
3,031,336 + -0.7
3,031,384 + +0.8
3,031,384 + -0.3
3,031,384 + +0.6
3,031,385 - -1.2
3,031,385 - +1.2
3,031,386 + +0.2
3,031,386 + +1.9
3,031,386 + -0.0
3,031,387 - +0.1
3,031,387 - -0.5
3,031,387 - -0.5
3,032,092 + ABZR86_RS13535 0.62 +0.3
3,032,209 + ABZR86_RS13535 0.72 -0.9
3,032,209 + ABZR86_RS13535 0.72 +0.8
3,032,209 + ABZR86_RS13535 0.72 +0.5
3,032,209 + ABZR86_RS13535 0.72 +0.5
3,032,209 + ABZR86_RS13535 0.72 -0.9
3,032,209 + ABZR86_RS13535 0.72 +0.6
3,032,209 + ABZR86_RS13535 0.72 -2.8
3,032,209 + ABZR86_RS13535 0.72 -0.3
3,032,210 - ABZR86_RS13535 0.72 +0.6
3,032,210 - ABZR86_RS13535 0.72 +0.0
3,032,210 - ABZR86_RS13535 0.72 +0.1
3,032,210 - ABZR86_RS13535 0.72 -0.0
3,032,210 - ABZR86_RS13535 0.72 -0.3
3,032,210 - ABZR86_RS13535 0.72 +0.9

Or see this region's nucleotide sequence