Experiment: Tetracycline 0.024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS13525 and ABZR86_RS13530 are separated by 78 nucleotides ABZR86_RS13530 and ABZR86_RS13535 are separated by 144 nucleotides
ABZR86_RS13525: ABZR86_RS13525 - oxygen-dependent coproporphyrinogen oxidase, at 3,029,524 to 3,030,426
_RS13525
ABZR86_RS13530: ABZR86_RS13530 - YdcF family protein, at 3,030,505 to 3,031,215
_RS13530
ABZR86_RS13535: ABZR86_RS13535 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 3,031,360 to 3,032,544
_RS13535
Position (kb)
3030
3031
3032 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3030.462 kb on + strand at 3030.462 kb on + strand at 3030.462 kb on + strand at 3030.462 kb on + strand at 3030.462 kb on + strand at 3030.462 kb on + strand at 3030.462 kb on + strand at 3030.463 kb on - strand at 3030.463 kb on - strand at 3030.463 kb on - strand at 3030.463 kb on - strand at 3030.463 kb on - strand at 3030.463 kb on - strand at 3030.463 kb on - strand at 3030.463 kb on - strand at 3030.463 kb on - strand at 3030.506 kb on + strand at 3030.581 kb on + strand, within ABZR86_RS13530 at 3030.581 kb on + strand, within ABZR86_RS13530 at 3030.581 kb on + strand, within ABZR86_RS13530 at 3030.581 kb on + strand, within ABZR86_RS13530 at 3030.581 kb on + strand, within ABZR86_RS13530 at 3030.581 kb on + strand, within ABZR86_RS13530 at 3030.581 kb on + strand, within ABZR86_RS13530 at 3030.581 kb on + strand, within ABZR86_RS13530 at 3030.581 kb on + strand, within ABZR86_RS13530 at 3030.581 kb on + strand, within ABZR86_RS13530 at 3030.581 kb on + strand, within ABZR86_RS13530 at 3030.582 kb on - strand, within ABZR86_RS13530 at 3030.582 kb on - strand, within ABZR86_RS13530 at 3030.582 kb on - strand, within ABZR86_RS13530 at 3030.582 kb on - strand, within ABZR86_RS13530 at 3030.582 kb on - strand, within ABZR86_RS13530 at 3030.582 kb on - strand, within ABZR86_RS13530 at 3030.582 kb on - strand, within ABZR86_RS13530 at 3030.582 kb on - strand, within ABZR86_RS13530 at 3030.582 kb on - strand, within ABZR86_RS13530 at 3030.582 kb on - strand, within ABZR86_RS13530 at 3030.582 kb on - strand, within ABZR86_RS13530 at 3030.582 kb on - strand, within ABZR86_RS13530 at 3030.707 kb on + strand, within ABZR86_RS13530 at 3030.707 kb on + strand, within ABZR86_RS13530 at 3030.977 kb on + strand, within ABZR86_RS13530 at 3030.978 kb on - strand, within ABZR86_RS13530 at 3030.978 kb on - strand, within ABZR86_RS13530 at 3030.978 kb on - strand, within ABZR86_RS13530 at 3031.255 kb on + strand at 3031.255 kb on + strand at 3031.255 kb on + strand at 3031.255 kb on + strand at 3031.255 kb on + strand at 3031.255 kb on + strand at 3031.255 kb on + strand at 3031.255 kb on + strand at 3031.256 kb on - strand at 3031.256 kb on - strand at 3031.256 kb on - strand at 3031.256 kb on - strand at 3031.275 kb on + strand at 3031.275 kb on + strand at 3031.275 kb on + strand at 3031.275 kb on + strand at 3031.275 kb on + strand at 3031.275 kb on + strand at 3031.275 kb on + strand at 3031.275 kb on + strand at 3031.275 kb on + strand at 3031.276 kb on - strand at 3031.276 kb on - strand at 3031.288 kb on + strand at 3031.288 kb on + strand at 3031.288 kb on + strand at 3031.288 kb on + strand at 3031.289 kb on - strand at 3031.289 kb on - strand at 3031.289 kb on - strand at 3031.296 kb on + strand at 3031.296 kb on + strand at 3031.296 kb on + strand at 3031.297 kb on - strand at 3031.297 kb on - strand at 3031.297 kb on - strand at 3031.297 kb on - strand at 3031.297 kb on - strand at 3031.297 kb on - strand at 3031.297 kb on - strand at 3031.297 kb on - strand at 3031.297 kb on - strand at 3031.297 kb on - strand at 3031.297 kb on - strand at 3031.297 kb on - strand at 3031.297 kb on - strand at 3031.336 kb on + strand at 3031.336 kb on + strand at 3031.384 kb on + strand at 3031.384 kb on + strand at 3031.384 kb on + strand at 3031.385 kb on - strand at 3031.385 kb on - strand at 3031.386 kb on + strand at 3031.386 kb on + strand at 3031.386 kb on + strand at 3031.387 kb on - strand at 3031.387 kb on - strand at 3031.387 kb on - strand at 3032.092 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.209 kb on + strand, within ABZR86_RS13535 at 3032.210 kb on - strand, within ABZR86_RS13535 at 3032.210 kb on - strand, within ABZR86_RS13535 at 3032.210 kb on - strand, within ABZR86_RS13535 at 3032.210 kb on - strand, within ABZR86_RS13535 at 3032.210 kb on - strand, within ABZR86_RS13535 at 3032.210 kb on - strand, within ABZR86_RS13535
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.024 mg/ml remove 3,030,462 + +0.5 3,030,462 + -0.5 3,030,462 + -1.2 3,030,462 + -2.3 3,030,462 + +0.4 3,030,462 + +0.0 3,030,462 + -0.5 3,030,463 - -0.5 3,030,463 - -1.4 3,030,463 - -2.4 3,030,463 - +0.2 3,030,463 - +0.5 3,030,463 - -0.3 3,030,463 - -3.3 3,030,463 - +0.4 3,030,463 - +0.3 3,030,506 + -0.7 3,030,581 + ABZR86_RS13530 0.11 -0.5 3,030,581 + ABZR86_RS13530 0.11 -0.5 3,030,581 + ABZR86_RS13530 0.11 -0.3 3,030,581 + ABZR86_RS13530 0.11 -1.3 3,030,581 + ABZR86_RS13530 0.11 -0.3 3,030,581 + ABZR86_RS13530 0.11 -0.2 3,030,581 + ABZR86_RS13530 0.11 +1.1 3,030,581 + ABZR86_RS13530 0.11 -2.5 3,030,581 + ABZR86_RS13530 0.11 -0.2 3,030,581 + ABZR86_RS13530 0.11 -0.5 3,030,581 + ABZR86_RS13530 0.11 -1.6 3,030,582 - ABZR86_RS13530 0.11 -0.5 3,030,582 - ABZR86_RS13530 0.11 -0.1 3,030,582 - ABZR86_RS13530 0.11 -0.7 3,030,582 - ABZR86_RS13530 0.11 +0.3 3,030,582 - ABZR86_RS13530 0.11 +0.2 3,030,582 - ABZR86_RS13530 0.11 -1.0 3,030,582 - ABZR86_RS13530 0.11 -0.1 3,030,582 - ABZR86_RS13530 0.11 -0.4 3,030,582 - ABZR86_RS13530 0.11 -0.2 3,030,582 - ABZR86_RS13530 0.11 +0.7 3,030,582 - ABZR86_RS13530 0.11 +0.1 3,030,582 - ABZR86_RS13530 0.11 -0.7 3,030,707 + ABZR86_RS13530 0.28 -1.8 3,030,707 + ABZR86_RS13530 0.28 +0.0 3,030,977 + ABZR86_RS13530 0.66 -2.1 3,030,978 - ABZR86_RS13530 0.67 -0.0 3,030,978 - ABZR86_RS13530 0.67 -0.3 3,030,978 - ABZR86_RS13530 0.67 -0.7 3,031,255 + -1.6 3,031,255 + -2.6 3,031,255 + -3.2 3,031,255 + -0.3 3,031,255 + -2.8 3,031,255 + +0.4 3,031,255 + -1.0 3,031,255 + -3.0 3,031,256 - +0.0 3,031,256 - +0.6 3,031,256 - +0.4 3,031,256 - +0.8 3,031,275 + -0.5 3,031,275 + -0.3 3,031,275 + -1.4 3,031,275 + -0.1 3,031,275 + -1.6 3,031,275 + -1.7 3,031,275 + +0.5 3,031,275 + -0.1 3,031,275 + -0.8 3,031,276 - -0.4 3,031,276 - +0.6 3,031,288 + -2.4 3,031,288 + -1.0 3,031,288 + -0.9 3,031,288 + -1.6 3,031,289 - +0.1 3,031,289 - +1.6 3,031,289 - -0.1 3,031,296 + -3.4 3,031,296 + +0.2 3,031,296 + -2.4 3,031,297 - +2.5 3,031,297 - -1.9 3,031,297 - +1.3 3,031,297 - +0.4 3,031,297 - +0.1 3,031,297 - +0.1 3,031,297 - -0.7 3,031,297 - +0.4 3,031,297 - +1.0 3,031,297 - -0.3 3,031,297 - +0.9 3,031,297 - +0.3 3,031,297 - +0.3 3,031,336 + +1.5 3,031,336 + -0.7 3,031,384 + +0.8 3,031,384 + -0.3 3,031,384 + +0.6 3,031,385 - -1.2 3,031,385 - +1.2 3,031,386 + +0.2 3,031,386 + +1.9 3,031,386 + -0.0 3,031,387 - +0.1 3,031,387 - -0.5 3,031,387 - -0.5 3,032,092 + ABZR86_RS13535 0.62 +0.3 3,032,209 + ABZR86_RS13535 0.72 -0.9 3,032,209 + ABZR86_RS13535 0.72 +0.8 3,032,209 + ABZR86_RS13535 0.72 +0.5 3,032,209 + ABZR86_RS13535 0.72 +0.5 3,032,209 + ABZR86_RS13535 0.72 -0.9 3,032,209 + ABZR86_RS13535 0.72 +0.6 3,032,209 + ABZR86_RS13535 0.72 -2.8 3,032,209 + ABZR86_RS13535 0.72 -0.3 3,032,210 - ABZR86_RS13535 0.72 +0.6 3,032,210 - ABZR86_RS13535 0.72 +0.0 3,032,210 - ABZR86_RS13535 0.72 +0.1 3,032,210 - ABZR86_RS13535 0.72 -0.0 3,032,210 - ABZR86_RS13535 0.72 -0.3 3,032,210 - ABZR86_RS13535 0.72 +0.9
Or see this region's nucleotide sequence