Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10530

Experiment: Tetracycline 0.024 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10525 and ABZR86_RS10530 are separated by 316 nucleotidesABZR86_RS10530 and ABZR86_RS10535 are separated by 728 nucleotides ABZR86_RS10525: ABZR86_RS10525 - proline--tRNA ligase, at 2,338,913 to 2,340,610 _RS10525 ABZR86_RS10530: ABZR86_RS10530 - H-NS histone family protein, at 2,340,927 to 2,341,256 _RS10530 ABZR86_RS10535: ABZR86_RS10535 - threonine/serine exporter family protein, at 2,341,985 to 2,343,295 _RS10535 Position (kb) 2340 2341 2342Strain fitness (log2 ratio) -3 -2 -1 0 1at 2340.707 kb on - strandat 2340.724 kb on - strandat 2340.733 kb on + strandat 2340.749 kb on + strandat 2340.867 kb on - strandat 2340.882 kb on + strandat 2340.893 kb on - strandat 2340.893 kb on - strandat 2340.902 kb on - strandat 2340.902 kb on - strandat 2340.922 kb on + strandat 2340.923 kb on - strandat 2340.957 kb on - strandat 2341.085 kb on - strand, within ABZR86_RS10530at 2341.340 kb on + strandat 2341.609 kb on + strandat 2341.693 kb on + strandat 2341.730 kb on - strandat 2341.888 kb on + strandat 2341.889 kb on - strandat 2341.889 kb on - strandat 2341.889 kb on - strandat 2342.067 kb on - strandat 2342.093 kb on - strandat 2342.109 kb on + strandat 2342.152 kb on + strand, within ABZR86_RS10535at 2342.202 kb on + strand, within ABZR86_RS10535at 2342.202 kb on + strand, within ABZR86_RS10535at 2342.203 kb on - strand, within ABZR86_RS10535at 2342.203 kb on - strand, within ABZR86_RS10535

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.024 mg/ml
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2,340,707 - -0.4
2,340,724 - -0.4
2,340,733 + -0.9
2,340,749 + -0.1
2,340,867 - +1.2
2,340,882 + +0.4
2,340,893 - +0.1
2,340,893 - -0.1
2,340,902 - +0.7
2,340,902 - +0.4
2,340,922 + -0.1
2,340,923 - -1.0
2,340,957 - -3.1
2,341,085 - ABZR86_RS10530 0.48 -0.7
2,341,340 + +1.1
2,341,609 + -1.1
2,341,693 + +0.3
2,341,730 - +0.2
2,341,888 + +0.9
2,341,889 - -1.3
2,341,889 - -0.2
2,341,889 - -0.5
2,342,067 - -2.1
2,342,093 - +0.3
2,342,109 + +0.2
2,342,152 + ABZR86_RS10535 0.13 +1.2
2,342,202 + ABZR86_RS10535 0.17 +0.4
2,342,202 + ABZR86_RS10535 0.17 -0.9
2,342,203 - ABZR86_RS10535 0.17 -0.6
2,342,203 - ABZR86_RS10535 0.17 -0.6

Or see this region's nucleotide sequence