Experiment: Tetracycline 0.024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS03635 and ABZR86_RS03640 are separated by 199 nucleotides ABZR86_RS03640 and ABZR86_RS03645 are separated by 2 nucleotides ABZR86_RS03645 and ABZR86_RS03650 are separated by 435 nucleotides
ABZR86_RS03635: ABZR86_RS03635 - hypothetical protein, at 789,153 to 792,686
_RS03635
ABZR86_RS03640: ABZR86_RS03640 - DUF488 family protein, at 792,886 to 793,440
_RS03640
ABZR86_RS03645: ABZR86_RS03645 - DUF2945 domain-containing protein, at 793,443 to 793,664
_RS03645
ABZR86_RS03650: ABZR86_RS03650 - TonB-dependent receptor, at 794,100 to 796,928
_RS03650
Position (kb) 793
794 Strain fitness (log2 ratio) -1
0
1 at 792.471 kb on + strand at 792.565 kb on - strand at 792.565 kb on - strand at 792.565 kb on - strand at 792.681 kb on + strand at 792.827 kb on + strand at 792.828 kb on - strand at 792.828 kb on - strand at 792.920 kb on + strand at 792.920 kb on + strand at 792.921 kb on - strand at 792.997 kb on - strand, within ABZR86_RS03640 at 793.029 kb on - strand, within ABZR86_RS03640 at 793.029 kb on - strand, within ABZR86_RS03640 at 793.444 kb on + strand at 793.481 kb on + strand, within ABZR86_RS03645 at 793.522 kb on + strand, within ABZR86_RS03645 at 793.565 kb on - strand, within ABZR86_RS03645 at 793.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.024 mg/ml remove 792,471 + +0.3 792,565 - +0.5 792,565 - +1.0 792,565 - +0.3 792,681 + +0.1 792,827 + -0.2 792,828 - -0.4 792,828 - +0.8 792,920 + +0.1 792,920 + -0.0 792,921 - -0.5 792,997 - ABZR86_RS03640 0.20 +1.7 793,029 - ABZR86_RS03640 0.26 +0.2 793,029 - ABZR86_RS03640 0.26 -1.7 793,444 + -1.7 793,481 + ABZR86_RS03645 0.17 +1.2 793,522 + ABZR86_RS03645 0.36 +0.1 793,565 - ABZR86_RS03645 0.55 +0.7 793,875 - -0.0
Or see this region's nucleotide sequence