Experiment: Tetracycline 0.024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02995 and ABZR86_RS03000 are separated by 420 nucleotides ABZR86_RS03000 and ABZR86_RS03005 are separated by 22 nucleotides ABZR86_RS03005 and ABZR86_RS03010 overlap by 4 nucleotides
ABZR86_RS02995: ABZR86_RS02995 - hypothetical protein, at 612,594 to 613,526
_RS02995
ABZR86_RS03000: ABZR86_RS03000 - SDR family oxidoreductase, at 613,947 to 614,951
_RS03000
ABZR86_RS03005: ABZR86_RS03005 - YetF domain-containing protein, at 614,974 to 615,441
_RS03005
ABZR86_RS03010: ABZR86_RS03010 - cation diffusion facilitator family transporter, at 615,438 to 616,406
_RS03010
Position (kb) 613
614
615 Strain fitness (log2 ratio) -2
-1
0
1 at 613.034 kb on + strand, within ABZR86_RS02995 at 613.034 kb on + strand, within ABZR86_RS02995 at 613.035 kb on - strand, within ABZR86_RS02995 at 613.083 kb on + strand, within ABZR86_RS02995 at 613.087 kb on + strand, within ABZR86_RS02995 at 613.088 kb on - strand, within ABZR86_RS02995 at 613.088 kb on - strand, within ABZR86_RS02995 at 613.232 kb on - strand, within ABZR86_RS02995 at 613.237 kb on + strand, within ABZR86_RS02995 at 613.237 kb on + strand, within ABZR86_RS02995 at 613.246 kb on + strand, within ABZR86_RS02995 at 613.246 kb on + strand, within ABZR86_RS02995 at 613.247 kb on - strand, within ABZR86_RS02995 at 613.250 kb on + strand, within ABZR86_RS02995 at 613.251 kb on - strand, within ABZR86_RS02995 at 613.306 kb on - strand, within ABZR86_RS02995 at 613.407 kb on + strand, within ABZR86_RS02995 at 613.435 kb on + strand at 613.579 kb on + strand at 613.580 kb on - strand at 614.194 kb on - strand, within ABZR86_RS03000 at 614.525 kb on + strand, within ABZR86_RS03000 at 614.525 kb on + strand, within ABZR86_RS03000 at 614.526 kb on - strand, within ABZR86_RS03000 at 614.526 kb on - strand, within ABZR86_RS03000 at 614.526 kb on - strand, within ABZR86_RS03000 at 614.665 kb on - strand, within ABZR86_RS03000 at 614.871 kb on + strand at 614.871 kb on + strand at 614.875 kb on + strand at 614.876 kb on - strand at 614.876 kb on - strand at 614.876 kb on - strand at 614.876 kb on - strand at 614.876 kb on - strand at 614.904 kb on + strand at 614.904 kb on + strand at 614.905 kb on - strand at 614.963 kb on + strand at 614.964 kb on - strand at 615.005 kb on - strand at 615.005 kb on - strand at 615.005 kb on - strand at 615.034 kb on + strand, within ABZR86_RS03005 at 615.720 kb on + strand, within ABZR86_RS03010 at 615.780 kb on + strand, within ABZR86_RS03010 at 615.781 kb on - strand, within ABZR86_RS03010
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.024 mg/ml remove 613,034 + ABZR86_RS02995 0.47 -1.3 613,034 + ABZR86_RS02995 0.47 +0.3 613,035 - ABZR86_RS02995 0.47 -1.2 613,083 + ABZR86_RS02995 0.52 -0.5 613,087 + ABZR86_RS02995 0.53 +0.7 613,088 - ABZR86_RS02995 0.53 -1.3 613,088 - ABZR86_RS02995 0.53 -1.4 613,232 - ABZR86_RS02995 0.68 +0.4 613,237 + ABZR86_RS02995 0.69 +0.1 613,237 + ABZR86_RS02995 0.69 +0.0 613,246 + ABZR86_RS02995 0.70 -0.3 613,246 + ABZR86_RS02995 0.70 -0.5 613,247 - ABZR86_RS02995 0.70 +0.3 613,250 + ABZR86_RS02995 0.70 +1.1 613,251 - ABZR86_RS02995 0.70 -0.0 613,306 - ABZR86_RS02995 0.76 -0.7 613,407 + ABZR86_RS02995 0.87 +0.4 613,435 + +0.0 613,579 + -0.0 613,580 - -0.2 614,194 - ABZR86_RS03000 0.25 -0.1 614,525 + ABZR86_RS03000 0.58 +0.9 614,525 + ABZR86_RS03000 0.58 -1.3 614,526 - ABZR86_RS03000 0.58 +0.2 614,526 - ABZR86_RS03000 0.58 -0.3 614,526 - ABZR86_RS03000 0.58 -2.2 614,665 - ABZR86_RS03000 0.71 -1.1 614,871 + -2.3 614,871 + -0.2 614,875 + +1.1 614,876 - -0.3 614,876 - -0.6 614,876 - -0.2 614,876 - -0.2 614,876 - -2.6 614,904 + -0.2 614,904 + -0.2 614,905 - -2.2 614,963 + -1.3 614,964 - -0.1 615,005 - +0.6 615,005 - -0.1 615,005 - +0.7 615,034 + ABZR86_RS03005 0.13 +1.7 615,720 + ABZR86_RS03010 0.29 -1.3 615,780 + ABZR86_RS03010 0.35 +0.3 615,781 - ABZR86_RS03010 0.35 +0.3
Or see this region's nucleotide sequence