Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS02600

Experiment: Tetracycline 0.024 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS02595 and ABZR86_RS02600 are separated by 54 nucleotidesABZR86_RS02600 and ABZR86_RS02605 are separated by 9 nucleotidesABZR86_RS02605 and ABZR86_RS02610 overlap by 4 nucleotidesABZR86_RS02610 and ABZR86_RS02615 overlap by 8 nucleotides ABZR86_RS02595: ABZR86_RS02595 - phage major capsid protein, at 526,731 to 527,969 _RS02595 ABZR86_RS02600: ABZR86_RS02600 - hypothetical protein, at 528,024 to 528,194 _RS02600 ABZR86_RS02605: ABZR86_RS02605 - head-tail connector protein, at 528,204 to 528,689 _RS02605 ABZR86_RS02610: ABZR86_RS02610 - head-tail adaptor protein, at 528,686 to 529,051 _RS02610 ABZR86_RS02615: ABZR86_RS02615 - HK97 gp10 family phage protein, at 529,044 to 529,571 _RS02615 Position (kb) 528 529Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 527.116 kb on - strand, within ABZR86_RS02595at 527.230 kb on - strand, within ABZR86_RS02595at 527.334 kb on + strand, within ABZR86_RS02595at 527.335 kb on - strand, within ABZR86_RS02595at 527.335 kb on - strand, within ABZR86_RS02595at 527.335 kb on - strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.446 kb on - strand, within ABZR86_RS02595at 527.446 kb on - strand, within ABZR86_RS02595at 527.490 kb on + strand, within ABZR86_RS02595at 527.490 kb on + strand, within ABZR86_RS02595at 527.491 kb on - strand, within ABZR86_RS02595at 527.598 kb on + strand, within ABZR86_RS02595at 527.598 kb on + strand, within ABZR86_RS02595at 527.599 kb on - strand, within ABZR86_RS02595at 527.599 kb on - strand, within ABZR86_RS02595at 527.599 kb on - strand, within ABZR86_RS02595at 527.768 kb on + strand, within ABZR86_RS02595at 527.769 kb on - strand, within ABZR86_RS02595at 527.826 kb on + strand, within ABZR86_RS02595at 527.826 kb on + strand, within ABZR86_RS02595at 527.827 kb on - strand, within ABZR86_RS02595at 527.827 kb on - strand, within ABZR86_RS02595at 527.898 kb on + strandat 527.898 kb on + strandat 527.899 kb on - strandat 527.901 kb on - strandat 527.901 kb on - strandat 527.967 kb on + strandat 527.967 kb on + strandat 527.968 kb on - strandat 527.984 kb on + strandat 528.068 kb on + strand, within ABZR86_RS02600at 528.069 kb on - strand, within ABZR86_RS02600at 528.170 kb on + strand, within ABZR86_RS02600at 528.171 kb on - strand, within ABZR86_RS02600at 528.171 kb on - strand, within ABZR86_RS02600at 528.188 kb on + strandat 528.189 kb on - strandat 528.189 kb on - strandat 528.192 kb on + strandat 528.193 kb on - strandat 528.315 kb on + strand, within ABZR86_RS02605at 528.316 kb on - strand, within ABZR86_RS02605at 528.331 kb on + strand, within ABZR86_RS02605at 528.405 kb on + strand, within ABZR86_RS02605at 528.405 kb on + strand, within ABZR86_RS02605at 528.406 kb on - strand, within ABZR86_RS02605at 528.571 kb on + strand, within ABZR86_RS02605at 528.571 kb on + strand, within ABZR86_RS02605at 528.571 kb on + strand, within ABZR86_RS02605at 528.652 kb on - strandat 528.727 kb on - strand, within ABZR86_RS02610at 528.727 kb on - strand, within ABZR86_RS02610at 528.730 kb on + strand, within ABZR86_RS02610at 528.731 kb on - strand, within ABZR86_RS02610at 528.769 kb on + strand, within ABZR86_RS02610at 528.783 kb on + strand, within ABZR86_RS02610at 528.796 kb on - strand, within ABZR86_RS02610at 528.876 kb on - strand, within ABZR86_RS02610at 528.876 kb on - strand, within ABZR86_RS02610at 528.979 kb on - strand, within ABZR86_RS02610at 529.166 kb on - strand, within ABZR86_RS02615at 529.166 kb on - strand, within ABZR86_RS02615

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.024 mg/ml
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527,116 - ABZR86_RS02595 0.31 -0.7
527,230 - ABZR86_RS02595 0.40 +0.4
527,334 + ABZR86_RS02595 0.49 +0.6
527,335 - ABZR86_RS02595 0.49 +0.6
527,335 - ABZR86_RS02595 0.49 +0.4
527,335 - ABZR86_RS02595 0.49 -0.6
527,445 + ABZR86_RS02595 0.58 +0.2
527,445 + ABZR86_RS02595 0.58 -1.0
527,445 + ABZR86_RS02595 0.58 +0.1
527,445 + ABZR86_RS02595 0.58 -0.1
527,445 + ABZR86_RS02595 0.58 -2.8
527,445 + ABZR86_RS02595 0.58 -0.0
527,445 + ABZR86_RS02595 0.58 +0.4
527,445 + ABZR86_RS02595 0.58 -1.1
527,445 + ABZR86_RS02595 0.58 +1.1
527,445 + ABZR86_RS02595 0.58 +1.6
527,446 - ABZR86_RS02595 0.58 +0.1
527,446 - ABZR86_RS02595 0.58 +0.6
527,490 + ABZR86_RS02595 0.61 +0.6
527,490 + ABZR86_RS02595 0.61 -2.0
527,491 - ABZR86_RS02595 0.61 +0.8
527,598 + ABZR86_RS02595 0.70 +0.6
527,598 + ABZR86_RS02595 0.70 +1.1
527,599 - ABZR86_RS02595 0.70 +0.4
527,599 - ABZR86_RS02595 0.70 +0.6
527,599 - ABZR86_RS02595 0.70 +0.0
527,768 + ABZR86_RS02595 0.84 -0.7
527,769 - ABZR86_RS02595 0.84 +1.0
527,826 + ABZR86_RS02595 0.88 +0.3
527,826 + ABZR86_RS02595 0.88 -0.4
527,827 - ABZR86_RS02595 0.88 -0.7
527,827 - ABZR86_RS02595 0.88 +0.4
527,898 + +0.6
527,898 + -0.4
527,899 - -0.1
527,901 - -0.4
527,901 - +1.8
527,967 + +0.5
527,967 + +0.2
527,968 - -0.3
527,984 + -0.5
528,068 + ABZR86_RS02600 0.26 +0.2
528,069 - ABZR86_RS02600 0.26 -3.1
528,170 + ABZR86_RS02600 0.85 -4.0
528,171 - ABZR86_RS02600 0.86 -0.5
528,171 - ABZR86_RS02600 0.86 +0.2
528,188 + -0.6
528,189 - -1.1
528,189 - +0.3
528,192 + +0.4
528,193 - -0.8
528,315 + ABZR86_RS02605 0.23 -0.3
528,316 - ABZR86_RS02605 0.23 +0.0
528,331 + ABZR86_RS02605 0.26 +1.1
528,405 + ABZR86_RS02605 0.41 +1.3
528,405 + ABZR86_RS02605 0.41 -0.8
528,406 - ABZR86_RS02605 0.42 +0.1
528,571 + ABZR86_RS02605 0.76 -0.0
528,571 + ABZR86_RS02605 0.76 -0.6
528,571 + ABZR86_RS02605 0.76 -0.3
528,652 - -1.8
528,727 - ABZR86_RS02610 0.11 -0.1
528,727 - ABZR86_RS02610 0.11 -0.1
528,730 + ABZR86_RS02610 0.12 +0.8
528,731 - ABZR86_RS02610 0.12 -0.1
528,769 + ABZR86_RS02610 0.23 +0.3
528,783 + ABZR86_RS02610 0.27 -0.5
528,796 - ABZR86_RS02610 0.30 -0.0
528,876 - ABZR86_RS02610 0.52 +0.6
528,876 - ABZR86_RS02610 0.52 +0.0
528,979 - ABZR86_RS02610 0.80 +1.1
529,166 - ABZR86_RS02615 0.23 -0.4
529,166 - ABZR86_RS02615 0.23 +0.8

Or see this region's nucleotide sequence