Experiment: Tetracycline 0.024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02510 and ABZR86_RS02515 are separated by 14 nucleotides ABZR86_RS02515 and ABZR86_RS02520 overlap by 4 nucleotides
ABZR86_RS02510: ABZR86_RS02510 - DNA cytosine methyltransferase, at 513,391 to 515,451
_RS02510
ABZR86_RS02515: ABZR86_RS02515 - hypothetical protein, at 515,466 to 515,873
_RS02515
ABZR86_RS02520: ABZR86_RS02520 - DEAD/DEAH box helicase, at 515,870 to 517,621
_RS02520
Position (kb) 515
516 Strain fitness (log2 ratio) -2
-1
0
1
2 at 514.533 kb on - strand, within ABZR86_RS02510 at 515.227 kb on + strand, within ABZR86_RS02510 at 515.237 kb on + strand, within ABZR86_RS02510 at 515.237 kb on + strand, within ABZR86_RS02510 at 515.237 kb on + strand, within ABZR86_RS02510 at 515.237 kb on + strand, within ABZR86_RS02510 at 515.238 kb on - strand, within ABZR86_RS02510 at 515.242 kb on - strand, within ABZR86_RS02510 at 515.242 kb on - strand, within ABZR86_RS02510 at 515.242 kb on - strand, within ABZR86_RS02510 at 515.302 kb on + strand at 515.739 kb on + strand, within ABZR86_RS02515 at 515.739 kb on + strand, within ABZR86_RS02515 at 515.740 kb on - strand, within ABZR86_RS02515 at 515.740 kb on - strand, within ABZR86_RS02515 at 515.740 kb on - strand, within ABZR86_RS02515 at 515.740 kb on - strand, within ABZR86_RS02515 at 515.876 kb on + strand at 515.876 kb on + strand at 515.877 kb on - strand at 515.891 kb on + strand at 515.991 kb on + strand at 515.991 kb on + strand at 515.991 kb on + strand at 515.992 kb on - strand at 515.992 kb on - strand at 516.153 kb on + strand, within ABZR86_RS02520 at 516.153 kb on + strand, within ABZR86_RS02520 at 516.154 kb on - strand, within ABZR86_RS02520 at 516.189 kb on - strand, within ABZR86_RS02520 at 516.450 kb on + strand, within ABZR86_RS02520 at 516.450 kb on + strand, within ABZR86_RS02520 at 516.451 kb on - strand, within ABZR86_RS02520 at 516.451 kb on - strand, within ABZR86_RS02520 at 516.451 kb on - strand, within ABZR86_RS02520 at 516.451 kb on - strand, within ABZR86_RS02520 at 516.451 kb on - strand, within ABZR86_RS02520 at 516.451 kb on - strand, within ABZR86_RS02520 at 516.485 kb on + strand, within ABZR86_RS02520 at 516.485 kb on + strand, within ABZR86_RS02520 at 516.486 kb on - strand, within ABZR86_RS02520 at 516.584 kb on + strand, within ABZR86_RS02520 at 516.584 kb on + strand, within ABZR86_RS02520 at 516.584 kb on + strand, within ABZR86_RS02520 at 516.585 kb on - strand, within ABZR86_RS02520 at 516.600 kb on - strand, within ABZR86_RS02520 at 516.625 kb on + strand, within ABZR86_RS02520 at 516.625 kb on + strand, within ABZR86_RS02520 at 516.626 kb on - strand, within ABZR86_RS02520 at 516.626 kb on - strand, within ABZR86_RS02520 at 516.650 kb on + strand, within ABZR86_RS02520 at 516.650 kb on + strand, within ABZR86_RS02520 at 516.651 kb on - strand, within ABZR86_RS02520 at 516.656 kb on + strand, within ABZR86_RS02520 at 516.713 kb on + strand, within ABZR86_RS02520 at 516.713 kb on + strand, within ABZR86_RS02520 at 516.713 kb on + strand, within ABZR86_RS02520 at 516.713 kb on + strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.794 kb on + strand, within ABZR86_RS02520 at 516.794 kb on + strand, within ABZR86_RS02520 at 516.794 kb on + strand, within ABZR86_RS02520 at 516.795 kb on - strand, within ABZR86_RS02520
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.024 mg/ml remove 514,533 - ABZR86_RS02510 0.55 +0.6 515,227 + ABZR86_RS02510 0.89 -0.4 515,237 + ABZR86_RS02510 0.90 +0.1 515,237 + ABZR86_RS02510 0.90 -0.8 515,237 + ABZR86_RS02510 0.90 +0.0 515,237 + ABZR86_RS02510 0.90 +0.1 515,238 - ABZR86_RS02510 0.90 -0.2 515,242 - ABZR86_RS02510 0.90 +0.3 515,242 - ABZR86_RS02510 0.90 -0.4 515,242 - ABZR86_RS02510 0.90 +1.7 515,302 + -0.6 515,739 + ABZR86_RS02515 0.67 +1.3 515,739 + ABZR86_RS02515 0.67 -0.0 515,740 - ABZR86_RS02515 0.67 +0.6 515,740 - ABZR86_RS02515 0.67 +1.1 515,740 - ABZR86_RS02515 0.67 +0.1 515,740 - ABZR86_RS02515 0.67 -0.7 515,876 + -0.7 515,876 + -2.6 515,877 - +0.5 515,891 + -0.1 515,991 + -2.2 515,991 + +0.1 515,991 + -0.2 515,992 - -1.6 515,992 - -1.4 516,153 + ABZR86_RS02520 0.16 +0.3 516,153 + ABZR86_RS02520 0.16 -1.5 516,154 - ABZR86_RS02520 0.16 +0.7 516,189 - ABZR86_RS02520 0.18 +0.6 516,450 + ABZR86_RS02520 0.33 +1.5 516,450 + ABZR86_RS02520 0.33 +0.5 516,451 - ABZR86_RS02520 0.33 -0.3 516,451 - ABZR86_RS02520 0.33 +0.4 516,451 - ABZR86_RS02520 0.33 +0.9 516,451 - ABZR86_RS02520 0.33 -0.6 516,451 - ABZR86_RS02520 0.33 -0.5 516,451 - ABZR86_RS02520 0.33 -1.2 516,485 + ABZR86_RS02520 0.35 +0.4 516,485 + ABZR86_RS02520 0.35 -0.6 516,486 - ABZR86_RS02520 0.35 +0.1 516,584 + ABZR86_RS02520 0.41 +1.3 516,584 + ABZR86_RS02520 0.41 -0.4 516,584 + ABZR86_RS02520 0.41 +0.1 516,585 - ABZR86_RS02520 0.41 -0.7 516,600 - ABZR86_RS02520 0.42 -2.3 516,625 + ABZR86_RS02520 0.43 -0.2 516,625 + ABZR86_RS02520 0.43 +0.9 516,626 - ABZR86_RS02520 0.43 -1.1 516,626 - ABZR86_RS02520 0.43 +1.8 516,650 + ABZR86_RS02520 0.45 +0.6 516,650 + ABZR86_RS02520 0.45 +0.4 516,651 - ABZR86_RS02520 0.45 +0.9 516,656 + ABZR86_RS02520 0.45 +1.0 516,713 + ABZR86_RS02520 0.48 +0.3 516,713 + ABZR86_RS02520 0.48 -0.5 516,713 + ABZR86_RS02520 0.48 +0.5 516,713 + ABZR86_RS02520 0.48 +0.3 516,714 - ABZR86_RS02520 0.48 -0.4 516,714 - ABZR86_RS02520 0.48 +0.1 516,714 - ABZR86_RS02520 0.48 -0.2 516,714 - ABZR86_RS02520 0.48 +0.1 516,714 - ABZR86_RS02520 0.48 -0.8 516,714 - ABZR86_RS02520 0.48 -0.3 516,794 + ABZR86_RS02520 0.53 +0.1 516,794 + ABZR86_RS02520 0.53 -0.5 516,794 + ABZR86_RS02520 0.53 -0.9 516,795 - ABZR86_RS02520 0.53 -1.6
Or see this region's nucleotide sequence