Experiment: Tetracycline 0.024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02010 and ABZR86_RS02015 are separated by 86 nucleotides ABZR86_RS02015 and ABZR86_RS02020 are separated by 79 nucleotides ABZR86_RS02020 and ABZR86_RS02025 overlap by 4 nucleotides ABZR86_RS02025 and ABZR86_RS02030 are separated by 721 nucleotides
ABZR86_RS02010: ABZR86_RS02010 - hypothetical protein, at 433,453 to 434,010
_RS02010
ABZR86_RS02015: ABZR86_RS02015 - AlpA family transcriptional regulator, at 434,097 to 434,309
_RS02015
ABZR86_RS02020: ABZR86_RS02020 - DNA primase, at 434,389 to 434,823
_RS02020
ABZR86_RS02025: ABZR86_RS02025 - AAA family ATPase, at 434,820 to 435,992
_RS02025
ABZR86_RS02030: ABZR86_RS02030 - hypothetical protein, at 436,714 to 437,517
_RS02030
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 433.822 kb on - strand, within ABZR86_RS02010 at 433.827 kb on + strand, within ABZR86_RS02010 at 433.852 kb on - strand, within ABZR86_RS02010 at 433.852 kb on - strand, within ABZR86_RS02010 at 433.869 kb on + strand, within ABZR86_RS02010 at 433.869 kb on + strand, within ABZR86_RS02010 at 433.869 kb on + strand, within ABZR86_RS02010 at 433.870 kb on - strand, within ABZR86_RS02010 at 433.870 kb on - strand, within ABZR86_RS02010 at 433.870 kb on - strand, within ABZR86_RS02010 at 433.871 kb on + strand, within ABZR86_RS02010 at 433.871 kb on + strand, within ABZR86_RS02010 at 433.871 kb on + strand, within ABZR86_RS02010 at 433.897 kb on + strand, within ABZR86_RS02010 at 433.897 kb on + strand, within ABZR86_RS02010 at 433.898 kb on - strand, within ABZR86_RS02010 at 433.898 kb on - strand, within ABZR86_RS02010 at 433.898 kb on - strand, within ABZR86_RS02010 at 433.941 kb on - strand, within ABZR86_RS02010 at 433.977 kb on + strand at 433.978 kb on - strand at 434.008 kb on + strand at 434.008 kb on + strand at 434.008 kb on + strand at 434.009 kb on - strand at 434.011 kb on + strand at 434.012 kb on - strand at 434.092 kb on + strand at 434.092 kb on + strand at 434.093 kb on - strand at 434.162 kb on + strand, within ABZR86_RS02015 at 434.162 kb on + strand, within ABZR86_RS02015 at 434.179 kb on - strand, within ABZR86_RS02015 at 434.245 kb on + strand, within ABZR86_RS02015 at 434.373 kb on + strand at 434.373 kb on + strand at 434.373 kb on + strand at 434.373 kb on + strand at 434.374 kb on - strand at 434.374 kb on - strand at 434.374 kb on - strand at 434.418 kb on + strand at 434.418 kb on + strand at 434.418 kb on + strand at 434.419 kb on - strand at 434.499 kb on + strand, within ABZR86_RS02020 at 434.595 kb on - strand, within ABZR86_RS02020 at 434.624 kb on + strand, within ABZR86_RS02020 at 434.625 kb on - strand, within ABZR86_RS02020 at 434.625 kb on - strand, within ABZR86_RS02020 at 434.715 kb on + strand, within ABZR86_RS02020 at 434.775 kb on + strand, within ABZR86_RS02020 at 434.776 kb on - strand, within ABZR86_RS02020 at 434.776 kb on - strand, within ABZR86_RS02020 at 434.819 kb on + strand at 434.819 kb on + strand at 434.820 kb on - strand at 434.820 kb on - strand at 434.961 kb on + strand, within ABZR86_RS02025 at 434.961 kb on + strand, within ABZR86_RS02025 at 434.961 kb on + strand, within ABZR86_RS02025 at 434.962 kb on - strand, within ABZR86_RS02025 at 434.962 kb on - strand, within ABZR86_RS02025 at 434.962 kb on - strand, within ABZR86_RS02025 at 434.987 kb on + strand, within ABZR86_RS02025 at 434.988 kb on - strand, within ABZR86_RS02025 at 435.091 kb on + strand, within ABZR86_RS02025 at 435.092 kb on - strand, within ABZR86_RS02025 at 435.092 kb on - strand, within ABZR86_RS02025 at 435.092 kb on - strand, within ABZR86_RS02025 at 435.110 kb on + strand, within ABZR86_RS02025 at 435.110 kb on + strand, within ABZR86_RS02025 at 435.111 kb on - strand, within ABZR86_RS02025 at 435.111 kb on - strand, within ABZR86_RS02025 at 435.132 kb on + strand, within ABZR86_RS02025 at 435.132 kb on + strand, within ABZR86_RS02025 at 435.132 kb on + strand, within ABZR86_RS02025 at 435.152 kb on + strand, within ABZR86_RS02025 at 435.152 kb on + strand, within ABZR86_RS02025 at 435.232 kb on + strand, within ABZR86_RS02025 at 435.243 kb on + strand, within ABZR86_RS02025 at 435.243 kb on + strand, within ABZR86_RS02025 at 435.243 kb on + strand, within ABZR86_RS02025 at 435.243 kb on + strand, within ABZR86_RS02025 at 435.243 kb on + strand, within ABZR86_RS02025 at 435.243 kb on + strand, within ABZR86_RS02025 at 435.244 kb on - strand, within ABZR86_RS02025 at 435.244 kb on - strand, within ABZR86_RS02025 at 435.244 kb on - strand, within ABZR86_RS02025 at 435.244 kb on - strand, within ABZR86_RS02025 at 435.244 kb on - strand, within ABZR86_RS02025 at 435.245 kb on + strand, within ABZR86_RS02025 at 435.334 kb on + strand, within ABZR86_RS02025 at 435.335 kb on - strand, within ABZR86_RS02025 at 435.335 kb on - strand, within ABZR86_RS02025 at 435.335 kb on - strand, within ABZR86_RS02025 at 435.335 kb on - strand, within ABZR86_RS02025 at 435.335 kb on - strand, within ABZR86_RS02025 at 435.384 kb on + strand, within ABZR86_RS02025 at 435.616 kb on + strand, within ABZR86_RS02025 at 435.616 kb on + strand, within ABZR86_RS02025 at 435.616 kb on + strand, within ABZR86_RS02025 at 435.616 kb on + strand, within ABZR86_RS02025 at 435.616 kb on + strand, within ABZR86_RS02025 at 435.617 kb on - strand, within ABZR86_RS02025 at 435.617 kb on - strand, within ABZR86_RS02025 at 435.617 kb on - strand, within ABZR86_RS02025 at 435.621 kb on - strand, within ABZR86_RS02025 at 435.621 kb on - strand, within ABZR86_RS02025 at 435.651 kb on + strand, within ABZR86_RS02025 at 435.651 kb on + strand, within ABZR86_RS02025 at 435.651 kb on + strand, within ABZR86_RS02025 at 435.652 kb on - strand, within ABZR86_RS02025 at 435.652 kb on - strand, within ABZR86_RS02025 at 435.652 kb on - strand, within ABZR86_RS02025 at 435.652 kb on - strand, within ABZR86_RS02025 at 435.652 kb on - strand, within ABZR86_RS02025 at 435.652 kb on - strand, within ABZR86_RS02025 at 435.685 kb on - strand, within ABZR86_RS02025 at 435.791 kb on - strand, within ABZR86_RS02025 at 435.791 kb on - strand, within ABZR86_RS02025 at 435.791 kb on - strand, within ABZR86_RS02025 at 435.791 kb on - strand, within ABZR86_RS02025 at 435.833 kb on + strand, within ABZR86_RS02025 at 435.872 kb on + strand, within ABZR86_RS02025 at 435.872 kb on + strand, within ABZR86_RS02025 at 435.872 kb on + strand, within ABZR86_RS02025 at 435.873 kb on - strand, within ABZR86_RS02025 at 435.873 kb on - strand, within ABZR86_RS02025 at 435.873 kb on - strand, within ABZR86_RS02025 at 435.938 kb on + strand at 435.938 kb on + strand at 435.939 kb on - strand at 435.957 kb on - strand at 435.957 kb on - strand at 436.052 kb on + strand at 436.052 kb on + strand at 436.076 kb on + strand at 436.176 kb on - strand at 436.279 kb on + strand at 436.280 kb on - strand at 436.283 kb on + strand at 436.283 kb on + strand at 436.283 kb on + strand at 436.283 kb on + strand at 436.284 kb on - strand at 436.392 kb on - strand at 436.392 kb on - strand at 436.400 kb on + strand at 436.403 kb on + strand at 436.403 kb on + strand at 436.404 kb on - strand at 436.471 kb on + strand at 436.471 kb on + strand at 436.471 kb on + strand at 436.471 kb on + strand at 436.472 kb on - strand at 436.472 kb on - strand at 436.472 kb on - strand at 436.577 kb on - strand at 436.577 kb on - strand at 436.577 kb on - strand at 436.579 kb on + strand at 436.635 kb on + strand at 436.635 kb on + strand at 436.636 kb on - strand at 436.636 kb on - strand at 436.822 kb on + strand, within ABZR86_RS02030 at 436.822 kb on + strand, within ABZR86_RS02030 at 436.822 kb on + strand, within ABZR86_RS02030 at 436.823 kb on - strand, within ABZR86_RS02030 at 436.823 kb on - strand, within ABZR86_RS02030 at 436.823 kb on - strand, within ABZR86_RS02030 at 436.826 kb on + strand, within ABZR86_RS02030 at 436.827 kb on - strand, within ABZR86_RS02030 at 436.909 kb on - strand, within ABZR86_RS02030 at 436.957 kb on - strand, within ABZR86_RS02030 at 436.981 kb on - strand, within ABZR86_RS02030
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.024 mg/ml remove 433,822 - ABZR86_RS02010 0.66 -1.7 433,827 + ABZR86_RS02010 0.67 +0.4 433,852 - ABZR86_RS02010 0.72 -2.7 433,852 - ABZR86_RS02010 0.72 -1.5 433,869 + ABZR86_RS02010 0.75 -0.5 433,869 + ABZR86_RS02010 0.75 +0.9 433,869 + ABZR86_RS02010 0.75 +0.1 433,870 - ABZR86_RS02010 0.75 +0.4 433,870 - ABZR86_RS02010 0.75 +0.6 433,870 - ABZR86_RS02010 0.75 +1.0 433,871 + ABZR86_RS02010 0.75 +1.3 433,871 + ABZR86_RS02010 0.75 -0.1 433,871 + ABZR86_RS02010 0.75 -0.4 433,897 + ABZR86_RS02010 0.80 +1.0 433,897 + ABZR86_RS02010 0.80 +0.4 433,898 - ABZR86_RS02010 0.80 -0.0 433,898 - ABZR86_RS02010 0.80 +0.3 433,898 - ABZR86_RS02010 0.80 -3.2 433,941 - ABZR86_RS02010 0.87 +0.4 433,977 + -1.5 433,978 - +0.5 434,008 + +0.4 434,008 + -0.6 434,008 + -0.0 434,009 - -0.3 434,011 + +0.4 434,012 - -0.1 434,092 + +0.2 434,092 + +1.0 434,093 - +0.8 434,162 + ABZR86_RS02015 0.31 +0.5 434,162 + ABZR86_RS02015 0.31 -0.6 434,179 - ABZR86_RS02015 0.38 -0.4 434,245 + ABZR86_RS02015 0.69 +0.2 434,373 + +0.9 434,373 + +0.4 434,373 + -0.3 434,373 + +0.0 434,374 - +0.0 434,374 - +0.2 434,374 - -1.1 434,418 + +1.1 434,418 + +2.0 434,418 + -0.4 434,419 - +0.2 434,499 + ABZR86_RS02020 0.25 +0.5 434,595 - ABZR86_RS02020 0.47 +0.3 434,624 + ABZR86_RS02020 0.54 -0.1 434,625 - ABZR86_RS02020 0.54 +0.0 434,625 - ABZR86_RS02020 0.54 -0.1 434,715 + ABZR86_RS02020 0.75 -0.1 434,775 + ABZR86_RS02020 0.89 -1.0 434,776 - ABZR86_RS02020 0.89 +0.8 434,776 - ABZR86_RS02020 0.89 -1.0 434,819 + +0.2 434,819 + -0.7 434,820 - +0.4 434,820 - +0.0 434,961 + ABZR86_RS02025 0.12 +0.3 434,961 + ABZR86_RS02025 0.12 -1.5 434,961 + ABZR86_RS02025 0.12 +0.4 434,962 - ABZR86_RS02025 0.12 +0.6 434,962 - ABZR86_RS02025 0.12 -1.0 434,962 - ABZR86_RS02025 0.12 -1.2 434,987 + ABZR86_RS02025 0.14 +2.2 434,988 - ABZR86_RS02025 0.14 +0.1 435,091 + ABZR86_RS02025 0.23 -0.1 435,092 - ABZR86_RS02025 0.23 +0.6 435,092 - ABZR86_RS02025 0.23 +0.1 435,092 - ABZR86_RS02025 0.23 +0.2 435,110 + ABZR86_RS02025 0.25 +0.2 435,110 + ABZR86_RS02025 0.25 -1.6 435,111 - ABZR86_RS02025 0.25 -1.1 435,111 - ABZR86_RS02025 0.25 +0.6 435,132 + ABZR86_RS02025 0.27 +0.2 435,132 + ABZR86_RS02025 0.27 -0.3 435,132 + ABZR86_RS02025 0.27 -1.8 435,152 + ABZR86_RS02025 0.28 +0.1 435,152 + ABZR86_RS02025 0.28 +0.7 435,232 + ABZR86_RS02025 0.35 +1.0 435,243 + ABZR86_RS02025 0.36 -0.4 435,243 + ABZR86_RS02025 0.36 +0.6 435,243 + ABZR86_RS02025 0.36 -0.0 435,243 + ABZR86_RS02025 0.36 -3.1 435,243 + ABZR86_RS02025 0.36 -0.1 435,243 + ABZR86_RS02025 0.36 -0.5 435,244 - ABZR86_RS02025 0.36 +0.9 435,244 - ABZR86_RS02025 0.36 +1.1 435,244 - ABZR86_RS02025 0.36 -0.4 435,244 - ABZR86_RS02025 0.36 -1.2 435,244 - ABZR86_RS02025 0.36 +0.8 435,245 + ABZR86_RS02025 0.36 +0.7 435,334 + ABZR86_RS02025 0.44 +0.9 435,335 - ABZR86_RS02025 0.44 -0.6 435,335 - ABZR86_RS02025 0.44 +0.5 435,335 - ABZR86_RS02025 0.44 -1.4 435,335 - ABZR86_RS02025 0.44 -0.6 435,335 - ABZR86_RS02025 0.44 -0.9 435,384 + ABZR86_RS02025 0.48 +1.2 435,616 + ABZR86_RS02025 0.68 +0.3 435,616 + ABZR86_RS02025 0.68 +0.4 435,616 + ABZR86_RS02025 0.68 -3.0 435,616 + ABZR86_RS02025 0.68 -2.3 435,616 + ABZR86_RS02025 0.68 +0.6 435,617 - ABZR86_RS02025 0.68 -0.5 435,617 - ABZR86_RS02025 0.68 +1.2 435,617 - ABZR86_RS02025 0.68 -0.2 435,621 - ABZR86_RS02025 0.68 -1.5 435,621 - ABZR86_RS02025 0.68 -0.8 435,651 + ABZR86_RS02025 0.71 -0.5 435,651 + ABZR86_RS02025 0.71 -1.0 435,651 + ABZR86_RS02025 0.71 -1.5 435,652 - ABZR86_RS02025 0.71 +1.6 435,652 - ABZR86_RS02025 0.71 +0.3 435,652 - ABZR86_RS02025 0.71 -0.1 435,652 - ABZR86_RS02025 0.71 +1.0 435,652 - ABZR86_RS02025 0.71 +0.3 435,652 - ABZR86_RS02025 0.71 +0.6 435,685 - ABZR86_RS02025 0.74 -2.1 435,791 - ABZR86_RS02025 0.83 +1.2 435,791 - ABZR86_RS02025 0.83 -0.6 435,791 - ABZR86_RS02025 0.83 -0.7 435,791 - ABZR86_RS02025 0.83 -0.5 435,833 + ABZR86_RS02025 0.86 +0.5 435,872 + ABZR86_RS02025 0.90 -0.2 435,872 + ABZR86_RS02025 0.90 +0.3 435,872 + ABZR86_RS02025 0.90 +0.1 435,873 - ABZR86_RS02025 0.90 -0.1 435,873 - ABZR86_RS02025 0.90 +0.9 435,873 - ABZR86_RS02025 0.90 +0.2 435,938 + +1.5 435,938 + +0.6 435,939 - +2.0 435,957 - -0.0 435,957 - -0.7 436,052 + +0.3 436,052 + -1.9 436,076 + -1.0 436,176 - +0.3 436,279 + -0.3 436,280 - -0.6 436,283 + -0.0 436,283 + -0.1 436,283 + -0.7 436,283 + -0.2 436,284 - +0.1 436,392 - +1.2 436,392 - +0.1 436,400 + +1.3 436,403 + -0.4 436,403 + -0.6 436,404 - +0.8 436,471 + -0.2 436,471 + +0.4 436,471 + +0.3 436,471 + +0.4 436,472 - -0.4 436,472 - -0.1 436,472 - -2.3 436,577 - -1.2 436,577 - +0.6 436,577 - +0.3 436,579 + -0.8 436,635 + -0.1 436,635 + +1.2 436,636 - +0.2 436,636 - +0.2 436,822 + ABZR86_RS02030 0.13 -1.2 436,822 + ABZR86_RS02030 0.13 +0.3 436,822 + ABZR86_RS02030 0.13 -0.2 436,823 - ABZR86_RS02030 0.14 +0.2 436,823 - ABZR86_RS02030 0.14 -0.6 436,823 - ABZR86_RS02030 0.14 +0.2 436,826 + ABZR86_RS02030 0.14 +0.9 436,827 - ABZR86_RS02030 0.14 +0.5 436,909 - ABZR86_RS02030 0.24 +0.3 436,957 - ABZR86_RS02030 0.30 +0.5 436,981 - ABZR86_RS02030 0.33 +0.3
Or see this region's nucleotide sequence