Experiment: Tetracycline 0.024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01930 and ABZR86_RS01935 are separated by 1 nucleotides ABZR86_RS01935 and ABZR86_RS01940 are separated by 131 nucleotides ABZR86_RS01940 and ABZR86_RS01945 are separated by 22 nucleotides ABZR86_RS01945 and ABZR86_RS01950 are separated by 13 nucleotides ABZR86_RS01950 and ABZR86_RS01955 are separated by 165 nucleotides
ABZR86_RS01930: ABZR86_RS01930 - hypothetical protein, at 419,677 to 420,162
_RS01930
ABZR86_RS01935: ABZR86_RS01935 - SDR family oxidoreductase, at 420,164 to 420,976
_RS01935
ABZR86_RS01940: ABZR86_RS01940 - triose-phosphate isomerase, at 421,108 to 421,857
_RS01940
ABZR86_RS01945: ABZR86_RS01945 - preprotein translocase subunit SecG, at 421,880 to 422,335
_RS01945
ABZR86_RS01950: ABZR86_RS01950 - tRNA-Leu, at 422,349 to 422,433
_RS01950
ABZR86_RS01955: ABZR86_RS01955 - integrase arm-type DNA-binding domain-containing protein, at 422,599 to 423,900
_RS01955
Position (kb) 421
422 Strain fitness (log2 ratio) -2
-1
0
1
2 at 420.139 kb on - strand at 420.144 kb on + strand at 420.144 kb on + strand at 420.144 kb on + strand at 420.145 kb on - strand at 420.145 kb on - strand at 420.145 kb on - strand at 420.145 kb on - strand at 420.412 kb on + strand, within ABZR86_RS01935 at 420.413 kb on - strand, within ABZR86_RS01935 at 420.492 kb on + strand, within ABZR86_RS01935 at 420.492 kb on + strand, within ABZR86_RS01935 at 420.492 kb on + strand, within ABZR86_RS01935 at 420.492 kb on + strand, within ABZR86_RS01935 at 420.492 kb on + strand, within ABZR86_RS01935 at 420.493 kb on - strand, within ABZR86_RS01935 at 420.493 kb on - strand, within ABZR86_RS01935 at 420.493 kb on - strand, within ABZR86_RS01935 at 420.493 kb on - strand, within ABZR86_RS01935 at 420.493 kb on - strand, within ABZR86_RS01935 at 420.511 kb on - strand, within ABZR86_RS01935 at 420.511 kb on - strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.517 kb on + strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 420.518 kb on - strand, within ABZR86_RS01935 at 421.046 kb on + strand at 421.047 kb on - strand at 421.047 kb on - strand at 421.074 kb on - strand at 422.096 kb on + strand, within ABZR86_RS01945 at 422.096 kb on + strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.097 kb on - strand, within ABZR86_RS01945 at 422.333 kb on + strand at 422.333 kb on + strand at 422.333 kb on + strand at 422.333 kb on + strand at 422.333 kb on + strand at 422.486 kb on + strand at 422.599 kb on - strand at 422.609 kb on + strand at 422.609 kb on + strand at 422.610 kb on - strand at 422.622 kb on + strand at 422.623 kb on - strand at 422.665 kb on + strand at 422.665 kb on + strand at 422.665 kb on + strand at 422.697 kb on - strand at 422.697 kb on - strand at 422.718 kb on + strand at 422.719 kb on - strand at 422.719 kb on - strand at 422.831 kb on + strand, within ABZR86_RS01955 at 422.831 kb on + strand, within ABZR86_RS01955 at 422.832 kb on - strand, within ABZR86_RS01955 at 422.832 kb on - strand, within ABZR86_RS01955
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.024 mg/ml remove 420,139 - +0.3 420,144 + -2.5 420,144 + -1.7 420,144 + +0.5 420,145 - -0.6 420,145 - +0.2 420,145 - +0.9 420,145 - +0.4 420,412 + ABZR86_RS01935 0.31 -0.4 420,413 - ABZR86_RS01935 0.31 -0.2 420,492 + ABZR86_RS01935 0.40 +1.9 420,492 + ABZR86_RS01935 0.40 +0.5 420,492 + ABZR86_RS01935 0.40 -0.2 420,492 + ABZR86_RS01935 0.40 -0.7 420,492 + ABZR86_RS01935 0.40 +1.0 420,493 - ABZR86_RS01935 0.40 +0.1 420,493 - ABZR86_RS01935 0.40 +0.3 420,493 - ABZR86_RS01935 0.40 +0.1 420,493 - ABZR86_RS01935 0.40 +0.7 420,493 - ABZR86_RS01935 0.40 +0.5 420,511 - ABZR86_RS01935 0.43 -0.1 420,511 - ABZR86_RS01935 0.43 -0.6 420,517 + ABZR86_RS01935 0.43 +1.6 420,517 + ABZR86_RS01935 0.43 -0.4 420,517 + ABZR86_RS01935 0.43 -0.4 420,517 + ABZR86_RS01935 0.43 -0.3 420,517 + ABZR86_RS01935 0.43 +0.0 420,517 + ABZR86_RS01935 0.43 +0.3 420,517 + ABZR86_RS01935 0.43 +0.4 420,517 + ABZR86_RS01935 0.43 -0.7 420,517 + ABZR86_RS01935 0.43 -1.3 420,517 + ABZR86_RS01935 0.43 +0.7 420,517 + ABZR86_RS01935 0.43 -0.3 420,518 - ABZR86_RS01935 0.44 -1.8 420,518 - ABZR86_RS01935 0.44 +1.0 420,518 - ABZR86_RS01935 0.44 -0.2 420,518 - ABZR86_RS01935 0.44 -0.1 420,518 - ABZR86_RS01935 0.44 +0.1 420,518 - ABZR86_RS01935 0.44 +0.5 420,518 - ABZR86_RS01935 0.44 +0.2 420,518 - ABZR86_RS01935 0.44 +0.5 420,518 - ABZR86_RS01935 0.44 +0.1 420,518 - ABZR86_RS01935 0.44 -2.2 421,046 + -0.4 421,047 - +0.4 421,047 - +0.1 421,074 - -0.3 422,096 + ABZR86_RS01945 0.47 -0.2 422,096 + ABZR86_RS01945 0.47 -0.3 422,097 - ABZR86_RS01945 0.48 +0.6 422,097 - ABZR86_RS01945 0.48 -0.8 422,097 - ABZR86_RS01945 0.48 -1.6 422,097 - ABZR86_RS01945 0.48 -0.4 422,097 - ABZR86_RS01945 0.48 -0.3 422,333 + -0.8 422,333 + -0.8 422,333 + +0.3 422,333 + -0.5 422,333 + -1.6 422,486 + +0.2 422,599 - -0.7 422,609 + +0.3 422,609 + -0.8 422,610 - -1.1 422,622 + +1.0 422,623 - -0.7 422,665 + +1.9 422,665 + +1.1 422,665 + -1.0 422,697 - +1.1 422,697 - -0.1 422,718 + +1.5 422,719 - +1.1 422,719 - +0.4 422,831 + ABZR86_RS01955 0.18 -1.8 422,831 + ABZR86_RS01955 0.18 +0.2 422,832 - ABZR86_RS01955 0.18 +0.3 422,832 - ABZR86_RS01955 0.18 -0.3
Or see this region's nucleotide sequence