Experiment: Tetracycline 0.024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01040 and ABZR86_RS01045 are separated by 112 nucleotides ABZR86_RS01045 and ABZR86_RS01050 are separated by 70 nucleotides ABZR86_RS01050 and ABZR86_RS01055 are separated by 2 nucleotides
ABZR86_RS01040: ABZR86_RS01040 - histidine kinase dimerization/phospho-acceptor domain-containing protein, at 204,457 to 206,286
_RS01040
ABZR86_RS01045: ABZR86_RS01045 - response regulator transcription factor, at 206,399 to 207,037
_RS01045
ABZR86_RS01050: ABZR86_RS01050 - response regulator transcription factor, at 207,108 to 207,737
_RS01050
ABZR86_RS01055: ABZR86_RS01055 - CHASE2 domain-containing protein, at 207,740 to 208,891
_RS01055
Position (kb) 206
207
208 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 205.547 kb on - strand, within ABZR86_RS01040 at 205.547 kb on - strand, within ABZR86_RS01040 at 205.547 kb on - strand, within ABZR86_RS01040 at 205.925 kb on + strand, within ABZR86_RS01040 at 205.925 kb on + strand, within ABZR86_RS01040 at 205.925 kb on + strand, within ABZR86_RS01040 at 205.926 kb on - strand, within ABZR86_RS01040 at 205.957 kb on + strand, within ABZR86_RS01040 at 205.958 kb on - strand, within ABZR86_RS01040 at 205.958 kb on - strand, within ABZR86_RS01040 at 206.044 kb on + strand, within ABZR86_RS01040 at 206.044 kb on + strand, within ABZR86_RS01040 at 206.044 kb on + strand, within ABZR86_RS01040 at 206.045 kb on - strand, within ABZR86_RS01040 at 206.045 kb on - strand, within ABZR86_RS01040 at 206.045 kb on - strand, within ABZR86_RS01040 at 206.045 kb on - strand, within ABZR86_RS01040 at 206.157 kb on + strand at 206.157 kb on + strand at 206.157 kb on + strand at 206.158 kb on - strand at 206.158 kb on - strand at 206.158 kb on - strand at 206.158 kb on - strand at 206.158 kb on - strand at 206.161 kb on + strand at 206.161 kb on + strand at 206.161 kb on + strand at 206.161 kb on + strand at 206.162 kb on - strand at 206.162 kb on - strand at 206.162 kb on - strand at 206.196 kb on + strand at 206.196 kb on + strand at 206.196 kb on + strand at 206.217 kb on + strand at 206.218 kb on - strand at 206.218 kb on - strand at 206.226 kb on + strand at 206.226 kb on + strand at 206.227 kb on - strand at 206.227 kb on - strand at 206.227 kb on - strand at 206.227 kb on - strand at 206.235 kb on + strand at 206.276 kb on + strand at 206.276 kb on + strand at 206.277 kb on - strand at 206.277 kb on - strand at 206.277 kb on - strand at 206.362 kb on - strand at 206.579 kb on + strand, within ABZR86_RS01045 at 206.579 kb on + strand, within ABZR86_RS01045 at 206.579 kb on + strand, within ABZR86_RS01045 at 206.580 kb on - strand, within ABZR86_RS01045 at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.008 kb on + strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.009 kb on - strand at 207.014 kb on + strand at 207.015 kb on - strand at 207.091 kb on + strand at 207.092 kb on - strand at 207.092 kb on - strand at 207.097 kb on + strand at 207.098 kb on - strand at 207.098 kb on - strand at 207.098 kb on - strand at 207.113 kb on + strand at 207.114 kb on - strand at 207.477 kb on + strand, within ABZR86_RS01050 at 207.477 kb on + strand, within ABZR86_RS01050 at 207.477 kb on + strand, within ABZR86_RS01050 at 207.478 kb on - strand, within ABZR86_RS01050 at 207.478 kb on - strand, within ABZR86_RS01050 at 207.924 kb on + strand, within ABZR86_RS01055 at 207.924 kb on + strand, within ABZR86_RS01055 at 207.925 kb on - strand, within ABZR86_RS01055 at 207.925 kb on - strand, within ABZR86_RS01055
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.024 mg/ml remove 205,547 - ABZR86_RS01040 0.60 +0.3 205,547 - ABZR86_RS01040 0.60 -0.4 205,547 - ABZR86_RS01040 0.60 +0.6 205,925 + ABZR86_RS01040 0.80 -1.1 205,925 + ABZR86_RS01040 0.80 -0.7 205,925 + ABZR86_RS01040 0.80 +0.1 205,926 - ABZR86_RS01040 0.80 +0.2 205,957 + ABZR86_RS01040 0.82 -1.8 205,958 - ABZR86_RS01040 0.82 +0.9 205,958 - ABZR86_RS01040 0.82 +0.1 206,044 + ABZR86_RS01040 0.87 +0.6 206,044 + ABZR86_RS01040 0.87 +0.3 206,044 + ABZR86_RS01040 0.87 +0.1 206,045 - ABZR86_RS01040 0.87 +1.3 206,045 - ABZR86_RS01040 0.87 -0.6 206,045 - ABZR86_RS01040 0.87 +0.4 206,045 - ABZR86_RS01040 0.87 -1.2 206,157 + +1.0 206,157 + -1.4 206,157 + -0.2 206,158 - -1.4 206,158 - -0.9 206,158 - -3.0 206,158 - +1.1 206,158 - -0.7 206,161 + +0.3 206,161 + -0.7 206,161 + -0.1 206,161 + +0.4 206,162 - -1.5 206,162 - -0.3 206,162 - +1.3 206,196 + -0.6 206,196 + +0.8 206,196 + -1.1 206,217 + +0.5 206,218 - +0.7 206,218 - +0.6 206,226 + -0.7 206,226 + -0.3 206,227 - -0.4 206,227 - +0.5 206,227 - +0.1 206,227 - +0.2 206,235 + -0.3 206,276 + -0.1 206,276 + -0.2 206,277 - -0.1 206,277 - -0.3 206,277 - +0.5 206,362 - -0.2 206,579 + ABZR86_RS01045 0.28 +1.1 206,579 + ABZR86_RS01045 0.28 -1.1 206,579 + ABZR86_RS01045 0.28 -0.4 206,580 - ABZR86_RS01045 0.28 +0.3 207,008 + +1.5 207,008 + +0.4 207,008 + -2.1 207,008 + +0.1 207,008 + -0.2 207,008 + +0.9 207,008 + -0.4 207,008 + +0.6 207,008 + +0.5 207,008 + +0.8 207,008 + +0.7 207,008 + -1.1 207,008 + +1.3 207,008 + -1.2 207,008 + +0.9 207,008 + -0.2 207,009 - +0.0 207,009 - -1.7 207,009 - +0.9 207,009 - -1.5 207,009 - -1.7 207,009 - +0.2 207,009 - -0.2 207,009 - -0.3 207,009 - +0.8 207,009 - +0.6 207,009 - +0.3 207,009 - -0.6 207,009 - +0.4 207,009 - +0.5 207,009 - +0.8 207,009 - +1.3 207,009 - -0.1 207,009 - +0.5 207,009 - -2.3 207,009 - -0.0 207,009 - -0.4 207,014 + +0.2 207,015 - -1.9 207,091 + -1.1 207,092 - -0.6 207,092 - -0.1 207,097 + -1.2 207,098 - -0.1 207,098 - -0.2 207,098 - +0.5 207,113 + -1.6 207,114 - +0.2 207,477 + ABZR86_RS01050 0.59 -1.3 207,477 + ABZR86_RS01050 0.59 +0.3 207,477 + ABZR86_RS01050 0.59 +0.0 207,478 - ABZR86_RS01050 0.59 +0.3 207,478 - ABZR86_RS01050 0.59 -0.7 207,924 + ABZR86_RS01055 0.16 -0.2 207,924 + ABZR86_RS01055 0.16 +0.7 207,925 - ABZR86_RS01055 0.16 -1.1 207,925 - ABZR86_RS01055 0.16 +0.2
Or see this region's nucleotide sequence