Experiment: Tetracycline 0.024 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00630 and ABZR86_RS00635 are separated by 265 nucleotides ABZR86_RS00635 and ABZR86_RS00640 overlap by 13 nucleotides ABZR86_RS00640 and ABZR86_RS00645 overlap by 1 nucleotides
ABZR86_RS00630: ABZR86_RS00630 - DNA mismatch repair protein MutS, at 120,955 to 123,528
_RS00630
ABZR86_RS00635: ABZR86_RS00635 - DUF535 family protein, at 123,794 to 124,831
_RS00635
ABZR86_RS00640: ABZR86_RS00640 - sigma-70 family RNA polymerase sigma factor, at 124,819 to 125,370
_RS00640
ABZR86_RS00645: ABZR86_RS00645 - FecR domain-containing protein, at 125,370 to 126,341
_RS00645
Position (kb) 123
124
125 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 122.804 kb on + strand, within ABZR86_RS00630 at 122.804 kb on + strand, within ABZR86_RS00630 at 122.804 kb on + strand, within ABZR86_RS00630 at 122.805 kb on - strand, within ABZR86_RS00630 at 122.805 kb on - strand, within ABZR86_RS00630 at 122.805 kb on - strand, within ABZR86_RS00630 at 123.105 kb on - strand, within ABZR86_RS00630 at 123.105 kb on - strand, within ABZR86_RS00630 at 123.105 kb on - strand, within ABZR86_RS00630 at 123.105 kb on - strand, within ABZR86_RS00630 at 123.299 kb on + strand at 123.299 kb on + strand at 123.299 kb on + strand at 123.299 kb on + strand at 123.299 kb on + strand at 123.299 kb on + strand at 123.300 kb on - strand at 123.300 kb on - strand at 123.317 kb on + strand at 123.318 kb on - strand at 123.413 kb on + strand at 123.413 kb on + strand at 123.425 kb on + strand at 123.425 kb on + strand at 123.425 kb on + strand at 123.426 kb on - strand at 123.426 kb on - strand at 123.485 kb on + strand at 123.735 kb on + strand at 123.735 kb on + strand at 123.735 kb on + strand at 123.736 kb on - strand at 123.932 kb on + strand, within ABZR86_RS00635 at 123.932 kb on + strand, within ABZR86_RS00635 at 123.932 kb on + strand, within ABZR86_RS00635 at 123.932 kb on + strand, within ABZR86_RS00635 at 123.933 kb on - strand, within ABZR86_RS00635 at 123.933 kb on - strand, within ABZR86_RS00635 at 123.933 kb on - strand, within ABZR86_RS00635 at 123.933 kb on - strand, within ABZR86_RS00635 at 123.933 kb on - strand, within ABZR86_RS00635 at 123.967 kb on + strand, within ABZR86_RS00635 at 123.975 kb on - strand, within ABZR86_RS00635 at 124.112 kb on + strand, within ABZR86_RS00635 at 124.160 kb on + strand, within ABZR86_RS00635 at 124.160 kb on + strand, within ABZR86_RS00635 at 124.160 kb on + strand, within ABZR86_RS00635 at 124.160 kb on + strand, within ABZR86_RS00635 at 124.160 kb on + strand, within ABZR86_RS00635 at 124.160 kb on + strand, within ABZR86_RS00635 at 124.160 kb on + strand, within ABZR86_RS00635 at 124.160 kb on + strand, within ABZR86_RS00635 at 124.161 kb on - strand, within ABZR86_RS00635 at 124.161 kb on - strand, within ABZR86_RS00635 at 124.161 kb on - strand, within ABZR86_RS00635 at 124.161 kb on - strand, within ABZR86_RS00635 at 124.301 kb on + strand, within ABZR86_RS00635 at 124.302 kb on - strand, within ABZR86_RS00635 at 124.302 kb on - strand, within ABZR86_RS00635 at 124.302 kb on - strand, within ABZR86_RS00635 at 124.553 kb on + strand, within ABZR86_RS00635 at 124.553 kb on + strand, within ABZR86_RS00635 at 124.553 kb on + strand, within ABZR86_RS00635 at 124.554 kb on - strand, within ABZR86_RS00635 at 124.554 kb on - strand, within ABZR86_RS00635 at 124.554 kb on - strand, within ABZR86_RS00635 at 124.981 kb on + strand, within ABZR86_RS00640 at 124.981 kb on + strand, within ABZR86_RS00640 at 124.981 kb on + strand, within ABZR86_RS00640 at 124.981 kb on + strand, within ABZR86_RS00640 at 124.981 kb on + strand, within ABZR86_RS00640 at 124.981 kb on + strand, within ABZR86_RS00640 at 124.982 kb on - strand, within ABZR86_RS00640 at 124.982 kb on - strand, within ABZR86_RS00640 at 124.982 kb on - strand, within ABZR86_RS00640 at 124.982 kb on - strand, within ABZR86_RS00640 at 125.035 kb on + strand, within ABZR86_RS00640 at 125.035 kb on + strand, within ABZR86_RS00640 at 125.035 kb on + strand, within ABZR86_RS00640 at 125.036 kb on - strand, within ABZR86_RS00640 at 125.036 kb on - strand, within ABZR86_RS00640 at 125.036 kb on - strand, within ABZR86_RS00640 at 125.707 kb on - strand, within ABZR86_RS00645
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.024 mg/ml remove 122,804 + ABZR86_RS00630 0.72 -0.1 122,804 + ABZR86_RS00630 0.72 -0.3 122,804 + ABZR86_RS00630 0.72 -0.7 122,805 - ABZR86_RS00630 0.72 -0.6 122,805 - ABZR86_RS00630 0.72 -0.3 122,805 - ABZR86_RS00630 0.72 -1.0 123,105 - ABZR86_RS00630 0.84 -0.5 123,105 - ABZR86_RS00630 0.84 +0.2 123,105 - ABZR86_RS00630 0.84 -0.4 123,105 - ABZR86_RS00630 0.84 +0.6 123,299 + -1.4 123,299 + -0.9 123,299 + -1.0 123,299 + -1.5 123,299 + -0.6 123,299 + +0.3 123,300 - -0.2 123,300 - +0.4 123,317 + +0.4 123,318 - -0.4 123,413 + -1.8 123,413 + +0.4 123,425 + -0.4 123,425 + +0.9 123,425 + -2.3 123,426 - +0.1 123,426 - +0.3 123,485 + -2.8 123,735 + -1.4 123,735 + +0.2 123,735 + -2.3 123,736 - +0.9 123,932 + ABZR86_RS00635 0.13 -0.4 123,932 + ABZR86_RS00635 0.13 +0.3 123,932 + ABZR86_RS00635 0.13 -0.6 123,932 + ABZR86_RS00635 0.13 -1.6 123,933 - ABZR86_RS00635 0.13 +0.7 123,933 - ABZR86_RS00635 0.13 +0.1 123,933 - ABZR86_RS00635 0.13 +2.0 123,933 - ABZR86_RS00635 0.13 +0.4 123,933 - ABZR86_RS00635 0.13 +0.8 123,967 + ABZR86_RS00635 0.17 -2.5 123,975 - ABZR86_RS00635 0.17 -2.0 124,112 + ABZR86_RS00635 0.31 -0.4 124,160 + ABZR86_RS00635 0.35 -0.2 124,160 + ABZR86_RS00635 0.35 -1.0 124,160 + ABZR86_RS00635 0.35 -2.1 124,160 + ABZR86_RS00635 0.35 -1.2 124,160 + ABZR86_RS00635 0.35 -2.0 124,160 + ABZR86_RS00635 0.35 -0.3 124,160 + ABZR86_RS00635 0.35 -3.4 124,160 + ABZR86_RS00635 0.35 -2.2 124,161 - ABZR86_RS00635 0.35 -0.1 124,161 - ABZR86_RS00635 0.35 -0.6 124,161 - ABZR86_RS00635 0.35 -2.6 124,161 - ABZR86_RS00635 0.35 -1.8 124,301 + ABZR86_RS00635 0.49 -2.0 124,302 - ABZR86_RS00635 0.49 -0.4 124,302 - ABZR86_RS00635 0.49 -0.6 124,302 - ABZR86_RS00635 0.49 -0.5 124,553 + ABZR86_RS00635 0.73 -1.6 124,553 + ABZR86_RS00635 0.73 -4.5 124,553 + ABZR86_RS00635 0.73 -3.1 124,554 - ABZR86_RS00635 0.73 -2.5 124,554 - ABZR86_RS00635 0.73 -4.1 124,554 - ABZR86_RS00635 0.73 -1.2 124,981 + ABZR86_RS00640 0.29 -1.4 124,981 + ABZR86_RS00640 0.29 -3.4 124,981 + ABZR86_RS00640 0.29 -3.6 124,981 + ABZR86_RS00640 0.29 -2.1 124,981 + ABZR86_RS00640 0.29 -4.4 124,981 + ABZR86_RS00640 0.29 -4.0 124,982 - ABZR86_RS00640 0.30 -0.5 124,982 - ABZR86_RS00640 0.30 -0.8 124,982 - ABZR86_RS00640 0.30 -0.2 124,982 - ABZR86_RS00640 0.30 -0.9 125,035 + ABZR86_RS00640 0.39 -4.5 125,035 + ABZR86_RS00640 0.39 -3.7 125,035 + ABZR86_RS00640 0.39 -3.0 125,036 - ABZR86_RS00640 0.39 -0.9 125,036 - ABZR86_RS00640 0.39 -1.1 125,036 - ABZR86_RS00640 0.39 -2.0 125,707 - ABZR86_RS00645 0.35 +3.4
Or see this region's nucleotide sequence