Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0485

Experiment: BG11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0484 and gpmB are separated by 100 nucleotidesgpmB and pyrC are separated by 6 nucleotides Synpcc7942_0484: Synpcc7942_0484 - hypothetical protein, at 469,432 to 470,874 _0484 Synpcc7942_0485: gpmB - phosphoglycerate mutase, at 470,975 to 472,312 gpmB Synpcc7942_0486: pyrC - dihydroorotase, at 472,319 to 473,554 pyrC Position (kb) 470 471 472 473Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 470.144 kb on + strand, within Synpcc7942_0484at 470.167 kb on - strand, within Synpcc7942_0484at 470.302 kb on - strand, within Synpcc7942_0484at 470.573 kb on - strand, within Synpcc7942_0484at 470.599 kb on + strand, within Synpcc7942_0484at 470.654 kb on + strand, within Synpcc7942_0484at 470.719 kb on - strand, within Synpcc7942_0484at 470.764 kb on - strandat 470.780 kb on + strandat 470.836 kb on - strandat 470.853 kb on - strandat 470.860 kb on - strandat 470.860 kb on - strandat 470.860 kb on - strandat 470.871 kb on + strandat 470.906 kb on - strandat 470.945 kb on + strandat 470.947 kb on + strandat 470.947 kb on + strandat 470.947 kb on + strandat 472.306 kb on + strandat 472.314 kb on - strandat 472.316 kb on + strandat 472.316 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11
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470,144 + Synpcc7942_0484 0.49 -0.2
470,167 - Synpcc7942_0484 0.51 -0.2
470,302 - Synpcc7942_0484 0.60 -2.6
470,573 - Synpcc7942_0484 0.79 -2.6
470,599 + Synpcc7942_0484 0.81 -2.0
470,654 + Synpcc7942_0484 0.85 -3.6
470,719 - Synpcc7942_0484 0.89 -2.0
470,764 - -1.0
470,780 + -2.0
470,836 - -0.0
470,853 - -2.6
470,860 - +1.7
470,860 - +3.4
470,860 - +2.1
470,871 + -0.1
470,906 - -0.4
470,945 + -2.0
470,947 + +0.6
470,947 + -1.7
470,947 + -0.3
472,306 + +1.1
472,314 - +2.4
472,316 + +1.8
472,316 + +0.4

Or see this region's nucleotide sequence