Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0458

Experiment: BG11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpsbK and Synpcc7942_0457 are separated by 215 nucleotidesSynpcc7942_0457 and fghA are separated by 35 nucleotidesfghA and Synpcc7942_0459 are separated by 5 nucleotides Synpcc7942_0456: psbK - photosystem II reaction center protein PsbK precursor, at 445,209 to 445,346 psbK Synpcc7942_0457: Synpcc7942_0457 - hypothetical protein, at 445,562 to 446,179 _0457 Synpcc7942_0458: fghA - Carboxylesterase, at 446,215 to 447,051 fghA Synpcc7942_0459: Synpcc7942_0459 - glutathione-dependent formaldehyde dehydrogenase, at 447,057 to 448,166 _0459 Position (kb) 446 447 448Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 445.218 kb on + strandat 445.293 kb on - strand, within psbKat 445.349 kb on - strandat 445.356 kb on - strandat 445.364 kb on - strandat 445.395 kb on + strandat 445.446 kb on - strandat 445.573 kb on - strandat 445.583 kb on + strandat 445.593 kb on + strandat 445.601 kb on - strandat 445.641 kb on + strand, within Synpcc7942_0457at 445.670 kb on + strand, within Synpcc7942_0457at 445.670 kb on + strandat 445.670 kb on + strand, within Synpcc7942_0457at 445.670 kb on + strand, within Synpcc7942_0457at 445.675 kb on + strandat 445.678 kb on - strand, within Synpcc7942_0457at 445.678 kb on - strand, within Synpcc7942_0457at 445.678 kb on - strand, within Synpcc7942_0457at 445.678 kb on - strand, within Synpcc7942_0457at 445.681 kb on + strand, within Synpcc7942_0457at 445.686 kb on + strand, within Synpcc7942_0457at 445.689 kb on - strand, within Synpcc7942_0457at 445.691 kb on - strand, within Synpcc7942_0457at 445.755 kb on + strand, within Synpcc7942_0457at 445.763 kb on - strand, within Synpcc7942_0457at 445.771 kb on + strand, within Synpcc7942_0457at 445.783 kb on + strand, within Synpcc7942_0457at 445.790 kb on + strand, within Synpcc7942_0457at 445.798 kb on - strand, within Synpcc7942_0457at 445.799 kb on - strand, within Synpcc7942_0457at 445.806 kb on + strand, within Synpcc7942_0457at 445.814 kb on - strand, within Synpcc7942_0457at 445.832 kb on + strand, within Synpcc7942_0457at 445.874 kb on - strand, within Synpcc7942_0457at 445.897 kb on + strand, within Synpcc7942_0457at 445.900 kb on - strand, within Synpcc7942_0457at 445.933 kb on + strand, within Synpcc7942_0457at 445.933 kb on + strand, within Synpcc7942_0457at 445.933 kb on + strand, within Synpcc7942_0457at 445.938 kb on + strand, within Synpcc7942_0457at 445.941 kb on - strand, within Synpcc7942_0457at 445.951 kb on - strand, within Synpcc7942_0457at 445.988 kb on - strand, within Synpcc7942_0457at 446.071 kb on + strand, within Synpcc7942_0457at 446.120 kb on + strandat 446.169 kb on + strandat 446.169 kb on + strandat 446.185 kb on + strandat 446.200 kb on - strandat 446.234 kb on + strandat 446.242 kb on - strandat 446.287 kb on + strandat 446.318 kb on - strand, within fghAat 446.324 kb on - strand, within fghAat 446.337 kb on - strand, within fghAat 446.343 kb on + strand, within fghAat 446.453 kb on + strand, within fghAat 446.468 kb on - strand, within fghAat 446.477 kb on + strand, within fghAat 446.499 kb on - strand, within fghAat 446.507 kb on + strand, within fghAat 446.515 kb on - strand, within fghAat 446.533 kb on + strand, within fghAat 446.545 kb on + strand, within fghAat 446.553 kb on - strand, within fghAat 446.570 kb on + strand, within fghAat 446.578 kb on - strand, within fghAat 446.580 kb on + strand, within fghAat 446.588 kb on - strand, within fghAat 446.595 kb on - strand, within fghAat 446.665 kb on + strand, within fghAat 446.700 kb on + strand, within fghAat 446.708 kb on - strand, within fghAat 446.710 kb on - strand, within fghAat 446.741 kb on + strand, within fghAat 446.749 kb on - strand, within fghAat 446.782 kb on + strand, within fghAat 446.888 kb on + strand, within fghAat 446.896 kb on - strand, within fghAat 446.901 kb on - strand, within fghAat 446.901 kb on - strand, within fghAat 446.909 kb on + strand, within fghAat 446.917 kb on - strand, within fghAat 446.930 kb on - strand, within fghAat 446.930 kb on - strand, within fghAat 446.932 kb on - strand, within fghAat 446.947 kb on - strand, within fghAat 446.960 kb on - strand, within fghAat 446.965 kb on - strand, within fghAat 446.977 kb on + strandat 446.979 kb on + strandat 446.984 kb on + strandat 446.985 kb on - strandat 446.991 kb on + strandat 446.999 kb on - strandat 447.007 kb on - strandat 447.035 kb on + strandat 447.064 kb on - strandat 447.195 kb on - strand, within Synpcc7942_0459at 447.203 kb on + strand, within Synpcc7942_0459at 447.212 kb on - strand, within Synpcc7942_0459at 447.219 kb on - strand, within Synpcc7942_0459at 447.238 kb on + strand, within Synpcc7942_0459at 447.238 kb on + strand, within Synpcc7942_0459at 447.238 kb on + strand, within Synpcc7942_0459at 447.238 kb on + strand, within Synpcc7942_0459at 447.246 kb on - strand, within Synpcc7942_0459at 447.259 kb on + strand, within Synpcc7942_0459at 447.292 kb on + strand, within Synpcc7942_0459at 447.327 kb on + strand, within Synpcc7942_0459at 447.329 kb on - strand, within Synpcc7942_0459at 447.342 kb on + strand, within Synpcc7942_0459at 447.388 kb on - strand, within Synpcc7942_0459at 447.413 kb on + strand, within Synpcc7942_0459at 447.450 kb on - strand, within Synpcc7942_0459at 447.474 kb on + strand, within Synpcc7942_0459at 447.475 kb on + strand, within Synpcc7942_0459at 447.560 kb on - strand, within Synpcc7942_0459at 447.577 kb on - strand, within Synpcc7942_0459at 447.579 kb on + strand, within Synpcc7942_0459at 447.579 kb on + strand, within Synpcc7942_0459at 447.579 kb on + strand, within Synpcc7942_0459at 447.587 kb on - strandat 447.587 kb on - strand, within Synpcc7942_0459at 447.627 kb on + strand, within Synpcc7942_0459at 447.627 kb on + strand, within Synpcc7942_0459at 447.627 kb on + strand, within Synpcc7942_0459at 447.627 kb on + strand, within Synpcc7942_0459at 447.627 kb on + strand, within Synpcc7942_0459at 447.635 kb on - strand, within Synpcc7942_0459at 447.676 kb on + strand, within Synpcc7942_0459at 447.677 kb on + strand, within Synpcc7942_0459at 447.678 kb on - strand, within Synpcc7942_0459at 447.683 kb on - strand, within Synpcc7942_0459at 447.684 kb on - strand, within Synpcc7942_0459at 447.689 kb on - strand, within Synpcc7942_0459at 447.732 kb on + strand, within Synpcc7942_0459at 447.733 kb on + strand, within Synpcc7942_0459at 447.747 kb on + strand, within Synpcc7942_0459at 447.765 kb on + strand, within Synpcc7942_0459at 447.773 kb on - strand, within Synpcc7942_0459at 447.788 kb on + strand, within Synpcc7942_0459at 447.796 kb on - strand, within Synpcc7942_0459at 447.813 kb on + strand, within Synpcc7942_0459at 447.825 kb on + strand, within Synpcc7942_0459at 447.825 kb on + strand, within Synpcc7942_0459at 447.825 kb on + strand, within Synpcc7942_0459at 447.825 kb on + strand, within Synpcc7942_0459at 447.825 kb on + strand, within Synpcc7942_0459at 447.825 kb on + strand, within Synpcc7942_0459at 447.825 kb on + strand, within Synpcc7942_0459at 447.833 kb on - strand, within Synpcc7942_0459at 447.833 kb on - strand, within Synpcc7942_0459at 447.833 kb on - strand, within Synpcc7942_0459at 447.833 kb on - strand, within Synpcc7942_0459at 447.833 kb on - strand, within Synpcc7942_0459at 447.833 kb on - strand, within Synpcc7942_0459at 447.854 kb on + strand, within Synpcc7942_0459at 447.861 kb on - strand, within Synpcc7942_0459at 447.868 kb on + strand, within Synpcc7942_0459at 447.893 kb on + strand, within Synpcc7942_0459at 447.911 kb on + strand, within Synpcc7942_0459at 447.939 kb on + strand, within Synpcc7942_0459at 447.939 kb on + strand, within Synpcc7942_0459at 447.940 kb on + strand, within Synpcc7942_0459at 447.963 kb on + strand, within Synpcc7942_0459at 447.992 kb on - strand, within Synpcc7942_0459at 448.028 kb on + strand, within Synpcc7942_0459at 448.036 kb on - strand, within Synpcc7942_0459at 448.036 kb on - strand, within Synpcc7942_0459at 448.042 kb on + strand, within Synpcc7942_0459at 448.050 kb on - strand, within Synpcc7942_0459

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11
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445,218 + -2.0
445,293 - psbK Synpcc7942_0456 0.61 -1.0
445,349 - -1.2
445,356 - -1.0
445,364 - -0.0
445,395 + +0.6
445,446 - +3.2
445,573 - +1.0
445,583 + +2.3
445,593 + +2.2
445,601 - +2.3
445,641 + Synpcc7942_0457 0.13 -0.3
445,670 + Synpcc7942_0457 0.17 -1.0
445,670 + -1.0
445,670 + Synpcc7942_0457 0.17 +1.0
445,670 + Synpcc7942_0457 0.17 -1.0
445,675 + -1.0
445,678 - Synpcc7942_0457 0.19 +0.3
445,678 - Synpcc7942_0457 0.19 +1.0
445,678 - Synpcc7942_0457 0.19 -2.0
445,678 - Synpcc7942_0457 0.19 -0.2
445,681 + Synpcc7942_0457 0.19 +1.4
445,686 + Synpcc7942_0457 0.20 +0.7
445,689 - Synpcc7942_0457 0.21 +0.2
445,691 - Synpcc7942_0457 0.21 -1.0
445,755 + Synpcc7942_0457 0.31 +2.0
445,763 - Synpcc7942_0457 0.33 +1.0
445,771 + Synpcc7942_0457 0.34 +1.0
445,783 + Synpcc7942_0457 0.36 +1.1
445,790 + Synpcc7942_0457 0.37 +2.1
445,798 - Synpcc7942_0457 0.38 +0.3
445,799 - Synpcc7942_0457 0.38 +0.2
445,806 + Synpcc7942_0457 0.39 +1.4
445,814 - Synpcc7942_0457 0.41 +2.4
445,832 + Synpcc7942_0457 0.44 +2.0
445,874 - Synpcc7942_0457 0.50 +2.0
445,897 + Synpcc7942_0457 0.54 -2.0
445,900 - Synpcc7942_0457 0.55 -3.0
445,933 + Synpcc7942_0457 0.60 -2.3
445,933 + Synpcc7942_0457 0.60 +0.9
445,933 + Synpcc7942_0457 0.60 -1.6
445,938 + Synpcc7942_0457 0.61 +2.0
445,941 - Synpcc7942_0457 0.61 +0.6
445,951 - Synpcc7942_0457 0.63 +2.3
445,988 - Synpcc7942_0457 0.69 +0.6
446,071 + Synpcc7942_0457 0.82 -0.8
446,120 + +1.0
446,169 + -2.0
446,169 + -0.4
446,185 + +1.0
446,200 - -0.4
446,234 + +1.1
446,242 - -1.7
446,287 + -2.6
446,318 - fghA Synpcc7942_0458 0.12 +0.3
446,324 - fghA Synpcc7942_0458 0.13 -0.6
446,337 - fghA Synpcc7942_0458 0.15 -2.0
446,343 + fghA Synpcc7942_0458 0.15 -1.0
446,453 + fghA Synpcc7942_0458 0.28 -2.6
446,468 - fghA Synpcc7942_0458 0.30 -0.1
446,477 + fghA Synpcc7942_0458 0.31 -1.0
446,499 - fghA Synpcc7942_0458 0.34 +0.7
446,507 + fghA Synpcc7942_0458 0.35 -1.0
446,515 - fghA Synpcc7942_0458 0.36 -1.0
446,533 + fghA Synpcc7942_0458 0.38 -0.1
446,545 + fghA Synpcc7942_0458 0.39 +1.3
446,553 - fghA Synpcc7942_0458 0.40 -1.0
446,570 + fghA Synpcc7942_0458 0.42 -1.0
446,578 - fghA Synpcc7942_0458 0.43 -0.6
446,580 + fghA Synpcc7942_0458 0.44 -0.0
446,588 - fghA Synpcc7942_0458 0.45 -1.4
446,595 - fghA Synpcc7942_0458 0.45 -1.4
446,665 + fghA Synpcc7942_0458 0.54 -0.5
446,700 + fghA Synpcc7942_0458 0.58 -1.0
446,708 - fghA Synpcc7942_0458 0.59 -0.6
446,710 - fghA Synpcc7942_0458 0.59 -0.4
446,741 + fghA Synpcc7942_0458 0.63 -1.5
446,749 - fghA Synpcc7942_0458 0.64 -1.5
446,782 + fghA Synpcc7942_0458 0.68 -0.8
446,888 + fghA Synpcc7942_0458 0.80 -1.3
446,896 - fghA Synpcc7942_0458 0.81 -1.0
446,901 - fghA Synpcc7942_0458 0.82 -1.5
446,901 - fghA Synpcc7942_0458 0.82 -0.3
446,909 + fghA Synpcc7942_0458 0.83 +0.3
446,917 - fghA Synpcc7942_0458 0.84 -0.0
446,930 - fghA Synpcc7942_0458 0.85 -2.0
446,930 - fghA Synpcc7942_0458 0.85 -2.6
446,932 - fghA Synpcc7942_0458 0.86 -2.0
446,947 - fghA Synpcc7942_0458 0.87 +1.3
446,960 - fghA Synpcc7942_0458 0.89 -1.0
446,965 - fghA Synpcc7942_0458 0.90 -0.9
446,977 + -0.6
446,979 + +1.1
446,984 + -1.0
446,985 - +0.6
446,991 + +1.0
446,999 - +1.1
447,007 - +1.0
447,035 + -0.4
447,064 - -2.0
447,195 - Synpcc7942_0459 0.12 -3.7
447,203 + Synpcc7942_0459 0.13 -0.7
447,212 - Synpcc7942_0459 0.14 -1.6
447,219 - Synpcc7942_0459 0.15 +2.0
447,238 + Synpcc7942_0459 0.16 -2.0
447,238 + Synpcc7942_0459 0.16 -0.4
447,238 + Synpcc7942_0459 0.16 -2.6
447,238 + Synpcc7942_0459 0.16 +0.6
447,246 - Synpcc7942_0459 0.17 -1.0
447,259 + Synpcc7942_0459 0.18 -0.0
447,292 + Synpcc7942_0459 0.21 -3.8
447,327 + Synpcc7942_0459 0.24 -2.0
447,329 - Synpcc7942_0459 0.25 -2.0
447,342 + Synpcc7942_0459 0.26 -1.6
447,388 - Synpcc7942_0459 0.30 -3.6
447,413 + Synpcc7942_0459 0.32 -2.6
447,450 - Synpcc7942_0459 0.35 -0.8
447,474 + Synpcc7942_0459 0.38 -2.0
447,475 + Synpcc7942_0459 0.38 -1.0
447,560 - Synpcc7942_0459 0.45 -1.0
447,577 - Synpcc7942_0459 0.47 +1.9
447,579 + Synpcc7942_0459 0.47 -1.0
447,579 + Synpcc7942_0459 0.47 -2.6
447,579 + Synpcc7942_0459 0.47 -1.0
447,587 - -2.0
447,587 - Synpcc7942_0459 0.48 -2.6
447,627 + Synpcc7942_0459 0.51 -1.6
447,627 + Synpcc7942_0459 0.51 -0.4
447,627 + Synpcc7942_0459 0.51 -1.2
447,627 + Synpcc7942_0459 0.51 -0.4
447,627 + Synpcc7942_0459 0.51 -2.0
447,635 - Synpcc7942_0459 0.52 -2.6
447,676 + Synpcc7942_0459 0.56 +0.6
447,677 + Synpcc7942_0459 0.56 -1.2
447,678 - Synpcc7942_0459 0.56 -2.0
447,683 - Synpcc7942_0459 0.56 +2.1
447,684 - Synpcc7942_0459 0.56 -0.4
447,689 - Synpcc7942_0459 0.57 -1.0
447,732 + Synpcc7942_0459 0.61 -0.9
447,733 + Synpcc7942_0459 0.61 -3.0
447,747 + Synpcc7942_0459 0.62 -2.8
447,765 + Synpcc7942_0459 0.64 -0.3
447,773 - Synpcc7942_0459 0.65 -1.0
447,788 + Synpcc7942_0459 0.66 -3.9
447,796 - Synpcc7942_0459 0.67 -2.0
447,813 + Synpcc7942_0459 0.68 -2.0
447,825 + Synpcc7942_0459 0.69 -2.2
447,825 + Synpcc7942_0459 0.69 -1.6
447,825 + Synpcc7942_0459 0.69 -0.4
447,825 + Synpcc7942_0459 0.69 -1.0
447,825 + Synpcc7942_0459 0.69 -1.0
447,825 + Synpcc7942_0459 0.69 -3.0
447,825 + Synpcc7942_0459 0.69 +0.6
447,833 - Synpcc7942_0459 0.70 -0.3
447,833 - Synpcc7942_0459 0.70 +1.0
447,833 - Synpcc7942_0459 0.70 +0.8
447,833 - Synpcc7942_0459 0.70 +0.2
447,833 - Synpcc7942_0459 0.70 -2.3
447,833 - Synpcc7942_0459 0.70 -2.0
447,854 + Synpcc7942_0459 0.72 -1.0
447,861 - Synpcc7942_0459 0.72 -2.0
447,868 + Synpcc7942_0459 0.73 -1.0
447,893 + Synpcc7942_0459 0.75 -0.8
447,911 + Synpcc7942_0459 0.77 -2.0
447,939 + Synpcc7942_0459 0.79 -1.0
447,939 + Synpcc7942_0459 0.79 -2.0
447,940 + Synpcc7942_0459 0.80 -0.0
447,963 + Synpcc7942_0459 0.82 -3.6
447,992 - Synpcc7942_0459 0.84 -0.0
448,028 + Synpcc7942_0459 0.87 -2.0
448,036 - Synpcc7942_0459 0.88 -1.0
448,036 - Synpcc7942_0459 0.88 -2.0
448,042 + Synpcc7942_0459 0.89 +0.1
448,050 - Synpcc7942_0459 0.89 -2.6

Or see this region's nucleotide sequence