Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5116

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
6,070,324	+		Psyr_5115	0.75	-0.8
6,070,324	+		Psyr_5115	0.75	-0.1
6,070,405	+		Psyr_5115	0.78	+0.3
6,070,406	-		Psyr_5115	0.78	-1.9
6,070,457	+		Psyr_5115	0.79	+0.2
6,070,457	+		Psyr_5115	0.79	-0.9
6,070,457	+		Psyr_5115	0.79	+0.4
6,070,458	-		Psyr_5115	0.79	+0.5
6,070,458	-		Psyr_5115	0.79	-0.8
6,070,498	+		Psyr_5115	0.80	+0.9
6,070,529	+		Psyr_5115	0.81	+1.0
6,070,529	+		Psyr_5115	0.81	-0.6
6,070,529	+		Psyr_5115	0.81	+1.2
6,070,529	+		Psyr_5115	0.81	-3.3
6,070,529	+		Psyr_5115	0.81	+1.3
6,070,529	+		Psyr_5115	0.81	+1.1
6,070,529	+		Psyr_5115	0.81	-0.4
6,070,530	-		Psyr_5115	0.81	+0.5
6,070,530	-		Psyr_5115	0.81	-2.6
6,070,530	-		Psyr_5115	0.81	-2.6
6,070,549	-		Psyr_5115	0.82	+0.8
6,070,549	-		Psyr_5115	0.82	-2.1
6,070,584	+		Psyr_5115	0.82	+0.6
6,070,584	+		Psyr_5115	0.82	+0.2
6,070,584	+		Psyr_5115	0.82	-1.7
6,070,585	-		Psyr_5115	0.83	-0.1
6,070,585	-		Psyr_5115	0.83	+0.4
6,070,585	-		Psyr_5115	0.83	+1.7
6,070,585	-		Psyr_5115	0.83	-0.1
6,070,618	+		Psyr_5115	0.83	-0.2
6,070,618	+		Psyr_5115	0.83	-0.7
6,070,618	+		Psyr_5115	0.83	+0.5
6,070,629	+		Psyr_5115	0.84	+1.2
6,070,645	+		Psyr_5115	0.84	+0.6
6,070,655	+		Psyr_5115	0.84	-1.2
6,070,655	+		Psyr_5115	0.84	+1.1
6,070,656	-		Psyr_5115	0.84	-0.8
6,070,727	+		Psyr_5115	0.86	+0.9
6,070,744	+		Psyr_5115	0.87	-0.5
6,070,744	+		Psyr_5115	0.87	+0.1
6,070,745	-		Psyr_5115	0.87	-0.1
6,070,780	+		Psyr_5115	0.88	-0.6
6,070,781	-		Psyr_5115	0.88	-0.1
6,070,781	-		Psyr_5115	0.88	+0.4
6,070,842	+		Psyr_5115	0.90	+2.1
6,071,026	+				+0.4
6,071,027	-				+0.1
6,071,027	-				-2.6
6,071,034	+				-0.8
6,071,034	+				-0.3
6,071,034	+				-1.3
6,071,034	+				-0.5
6,071,034	+				-0.1
6,071,034	+				+0.2
6,071,034	+				+0.3
6,071,034	+				+0.5
6,071,034	+				-1.7
6,071,034	+				-2.4
6,071,034	+				+0.3
6,071,034	+				-0.1
6,071,034	+				-1.6
6,071,034	+				+0.2
6,071,034	+				-2.8
6,071,034	+				+1.9
6,071,034	+				+0.6
6,071,034	+				-3.7
6,071,034	+				-2.9
6,071,034	+				-0.3
6,071,034	+				+0.0
6,071,034	+				-0.3
6,071,034	+				-3.2
6,071,034	+				+0.3
6,071,034	+				+0.2
6,071,035	-				+0.5
6,071,035	-				+1.8
6,071,035	-				+0.1
6,071,035	-				+1.1
6,071,035	-				-1.1
6,071,035	-				-2.6
6,071,035	-				-1.0
6,071,035	-				+0.8
6,071,035	-				-1.8
6,071,035	-				+1.3
6,071,035	-				-0.5
6,071,035	-				+0.2
6,071,035	-				-2.6
6,071,035	-				+3.4
6,071,035	-				+0.6
6,071,035	-				-2.3
6,071,035	-				-0.3
6,071,035	-				-1.9
6,071,035	-				-0.9
6,071,035	-				+1.2
6,071,035	-				+1.0
6,071,035	-				-2.8
6,071,035	-				+0.4
6,071,035	-				-1.3
6,071,035	-				+1.5
6,071,035	-				-1.0
6,071,035	-				-1.3
6,071,035	-				-0.1
6,071,035	-				+0.7
6,071,035	-				+0.5
6,071,035	-				+0.9
6,071,246	+				+3.0
6,071,247	-				-0.1
6,071,247	-				-1.1
6,071,281	+				+0.8
6,071,281	+				-0.2
6,071,281	+				+2.4
6,071,281	+				-1.8
6,071,281	+				+0.6
6,071,282	-				+0.3
6,071,282	-				-0.4
6,071,282	-				-0.3
6,071,282	-				+0.0
6,071,282	-				-0.2
6,071,282	-				-0.5
6,071,297	-		Psyr_5116	0.12	-1.8
6,071,297	-		Psyr_5116	0.12	+0.1
6,071,321	+		Psyr_5116	0.16	-2.2
6,071,322	-		Psyr_5116	0.16	+0.4
6,071,322	-		Psyr_5116	0.16	-2.5
6,071,370	+		Psyr_5116	0.23	-1.0
6,071,370	+		Psyr_5116	0.23	-0.3
6,071,370	+		Psyr_5116	0.23	+0.5
6,071,370	+		Psyr_5116	0.23	-1.0
6,071,371	-		Psyr_5116	0.24	+0.7
6,071,371	-		Psyr_5116	0.24	+1.1
6,071,374	+		Psyr_5116	0.24	-0.5
6,071,374	+		Psyr_5116	0.24	-0.9
6,071,374	+		Psyr_5116	0.24	-0.5
6,071,374	+		Psyr_5116	0.24	-1.5
6,071,374	+		Psyr_5116	0.24	+0.2
6,071,374	+		Psyr_5116	0.24	-0.7
6,071,375	-		Psyr_5116	0.24	-1.6
6,071,375	-		Psyr_5116	0.24	+0.8
6,071,375	-		Psyr_5116	0.24	-0.1
6,071,375	-		Psyr_5116	0.24	+0.6
6,071,394	+		Psyr_5116	0.27	+0.1
6,071,463	+		Psyr_5116	0.38	+1.1
6,071,464	-		Psyr_5116	0.38	+0.2
6,071,464	-		Psyr_5116	0.38	+0.7
6,071,464	-		Psyr_5116	0.38	+0.1
6,071,464	-		Psyr_5116	0.38	+0.0
6,071,464	-		Psyr_5116	0.38	-0.8
6,071,595	+		Psyr_5116	0.59	+2.4
6,071,595	+		Psyr_5116	0.59	-0.1
6,071,596	-		Psyr_5116	0.59	-0.4
6,071,596	-		Psyr_5116	0.59	+0.5
6,071,622	+		Psyr_5116	0.63	+0.1
6,071,649	-		Psyr_5116	0.67	-0.0
6,071,656	+		Psyr_5116	0.68	+0.8
6,071,656	+		Psyr_5116	0.68	-1.5
6,071,656	+		Psyr_5116	0.68	-1.7
6,071,656	+		Psyr_5116	0.68	-1.9
6,071,657	-		Psyr_5116	0.69	+0.4
6,071,657	-		Psyr_5116	0.69	+0.7
6,071,661	+		Psyr_5116	0.69	+1.1
6,071,661	+		Psyr_5116	0.69	-1.5
6,071,661	+		Psyr_5116	0.69	+0.5
6,071,662	-		Psyr_5116	0.69	-0.7
6,071,662	-		Psyr_5116	0.69	-0.1
6,071,662	-		Psyr_5116	0.69	+0.0
6,071,662	-		Psyr_5116	0.69	+1.1
6,071,662	-		Psyr_5116	0.69	-0.8
6,071,662	-		Psyr_5116	0.69	-1.5
6,071,730	+		Psyr_5116	0.80	+0.2
6,071,730	+		Psyr_5116	0.80	-1.8
6,071,730	+		Psyr_5116	0.80	+0.3
6,071,730	+		Psyr_5116	0.80	-0.5
6,071,730	+		Psyr_5116	0.80	+0.6
6,071,730	+		Psyr_5116	0.80	-0.4
6,071,730	+		Psyr_5116	0.80	+0.9
6,071,731	-		Psyr_5116	0.80	+0.2
6,071,731	-		Psyr_5116	0.80	-0.4
6,071,731	-		Psyr_5116	0.80	-1.7
6,071,731	-		Psyr_5116	0.80	+0.5
6,071,756	+		Psyr_5116	0.84	-1.7
6,071,756	+		Psyr_5116	0.84	-0.5
6,071,756	+		Psyr_5116	0.84	+0.3
6,071,757	-		Psyr_5116	0.84	+0.3
6,071,822	+				-0.1
6,071,822	+				-2.1
6,071,822	+				-1.2
6,071,822	+				+0.3
6,071,822	+				+0.7
6,071,822	+				+0.9
6,071,823	-				-0.1
6,071,823	-				-0.0
6,071,823	-				-0.3
6,071,823	-				-0.2
6,071,823	-				+0.3
6,071,826	+				-0.4
6,071,826	+				-1.3
6,071,826	+				+0.2
6,071,826	+				+1.3
6,071,826	+				+3.4
6,071,826	+				-0.2
6,071,826	+				-2.8
6,071,826	+				+0.0
6,071,826	+				-1.3
6,071,826	+				+0.3
6,071,826	+				-0.2
6,071,826	+				+1.1
6,071,826	+				-0.9
6,071,826	+				-1.5
6,071,826	+				-1.1
6,071,826	+				+2.1
6,071,826	+				+3.1
6,071,826	+				-1.1
6,071,827	-				+0.4
6,071,827	-				+0.9
6,071,827	-				+0.7
6,071,827	-				-0.9
6,071,827	-				-0.1
6,071,827	-				+0.0
6,071,827	-				-2.4
6,071,827	-				-0.3
6,071,827	-				-1.4
6,071,827	-				+0.0
6,071,827	-				+0.1
6,071,827	-				-1.1
6,071,827	-				-0.1
6,071,827	-				+1.6
6,071,827	-				-0.1
6,071,827	-				+0.2
6,071,827	-				-2.5
6,071,827	-				+1.1
6,071,828	+				+2.1
6,071,828	+				+0.4
6,071,828	+				+0.6
6,071,829	-				-3.7
6,071,829	-				+0.1
6,071,829	-				+2.7
6,071,829	-				+1.4
6,071,829	-				+0.4
6,071,829	-				+0.9
6,071,829	-				+0.3
6,071,829	-				+0.5
6,071,829	-				-0.2
6,071,886	+				+0.0
6,071,898	+				-0.2
6,071,898	+				-0.5
6,071,898	+				-2.6
6,071,898	+				+0.1
6,071,898	+				+0.9
6,071,898	+				+1.6
6,071,898	+				+0.3
6,071,898	+				+0.5
6,071,898	+				-2.9
6,071,898	+				+0.6
6,071,898	+				+1.3
6,071,898	+				-1.7
6,071,899	-				+1.3
6,071,899	-				+1.3
6,071,899	-				+0.4
6,071,899	-				+0.3
6,071,899	-				+0.6
6,071,899	-				+0.5
6,071,899	-				+1.6
6,071,899	-				-0.4
6,071,899	-				-1.0
6,071,903	+				-0.7
6,071,903	+				+1.6
6,071,904	-				-2.1
6,071,904	-				-0.5
6,071,904	-				-0.8
6,071,904	-				+0.7
6,071,904	-				+0.5
6,071,904	-				-0.8
6,071,941	+				-0.1
6,071,941	+				+1.2
6,071,942	-				-0.3
6,071,942	-				+1.2
6,071,942	-				+0.5
6,071,983	+				+0.0
6,071,983	+				+0.4
6,071,984	-				+1.2
6,072,002	+				-1.1
6,072,002	+				+1.3
6,072,002	+				+0.1
6,072,002	+				+1.4
6,072,037	-				-0.8
6,072,037	-				-0.5
6,072,037	-				-0.1
6,072,068	+				+0.5
6,072,068	+				-0.5
6,072,068	+				+0.9
6,072,068	+				-1.7
6,072,068	+				-1.8
6,072,068	+				-0.8
6,072,069	-				+0.6
6,072,069	-				-1.1
6,072,069	-				+0.6
6,072,069	-				-1.8
6,072,069	-				+0.6
6,072,131	+				+0.3
6,072,131	+				+0.7
6,072,131	+				+0.2
6,072,131	+				+0.4
6,072,131	+				+2.3
6,072,131	+				+0.6
6,072,131	+				+0.9
6,072,131	+				+0.7
6,072,131	+				-0.4
6,072,131	+				+1.4
6,072,131	+				+0.6
6,072,131	+				-2.9
6,072,131	+				+0.1
6,072,131	+				-0.2
6,072,131	+				-0.5
6,072,131	+				+0.7
6,072,131	+				+0.7
6,072,131	+				-0.7
6,072,131	+				+0.4
6,072,131	+				+0.5
6,072,132	-				+1.5
6,072,132	-				-0.8
6,072,132	-				+0.1
6,072,132	-				+1.2
6,072,132	-				+0.9
6,072,132	-				-3.1
6,072,132	-				+1.2
6,072,132	-				-0.0
6,072,132	-				-3.1
6,072,132	-				+1.5
6,072,132	-				+0.4
6,072,132	-				+0.0
6,072,132	-				+0.6
6,072,132	-				-2.7
6,072,132	-				-0.7
6,072,132	-				-0.3
6,072,132	-				-0.5
6,072,132	-				+0.5
6,072,132	-				-0.3
6,072,132	-				+0.2
6,072,132	-				+1.1
6,072,132	-				-0.4
6,072,132	-				+1.1
6,072,135	+				-0.4
6,072,135	+				+0.2
6,072,135	+				-1.0
6,072,135	+				-0.5
6,072,135	+				-0.8
6,072,135	+				+0.2
6,072,135	+				-0.2
6,072,135	+				+1.2
6,072,135	+				+0.6
6,072,135	+				+1.3
6,072,135	+				-2.6
6,072,135	+				+0.8
6,072,135	+				-1.9
6,072,135	+				-0.2
6,072,135	+				+0.5
6,072,135	+				-2.4
6,072,135	+				-0.8
6,072,136	-				-0.4
6,072,136	-				-1.8
6,072,136	-				+0.1
6,072,136	-				-0.3
6,072,136	-				-0.8
6,072,136	-				-0.5
6,072,136	-				+0.0
6,072,136	-				-0.9
6,072,136	-				+1.3
6,072,136	-				+0.8
6,072,136	-				+0.4
6,072,136	-				-0.1
6,072,136	-				-2.1
6,072,136	-				+0.2
6,072,136	-				-1.4
6,072,136	-				-2.2
6,072,136	-				+0.2
6,072,136	-				+0.6
6,072,136	-				+0.1
6,072,136	-				-2.7
6,072,136	-				+1.4
6,072,136	-				+0.5
6,072,136	-				-0.3
6,072,136	-				+0.9
6,072,136	-				-0.1
6,072,136	-				+0.1
6,072,136	-				-0.7
6,072,170	+				-1.7
6,072,171	-				-1.7
6,072,171	-				-0.5
6,072,171	-				+0.6
6,072,214	+				+0.5
6,072,254	+				-0.4
6,072,254	+				+1.4
6,072,254	+				+0.1
6,072,254	+				-0.5
6,072,254	+				-0.8
6,072,254	+				-2.8
6,072,255	-				-3.3
6,072,255	-				-1.1
6,072,255	-				+0.5
6,072,255	-				-1.1
6,072,255	-				-0.9
6,072,282	+				+1.5
6,072,395	+				+1.0
6,072,396	-				-2.7
6,072,400	+				-1.6
6,072,400	+				-2.2
6,072,401	-				-0.9
6,072,401	-				+1.7
6,072,401	-				+0.9
6,072,401	-				-0.1
6,072,401	-				-1.7
6,072,434	+				+0.3
6,072,434	+				+0.7
6,072,435	-				-0.1
6,072,435	-				+0.9
6,072,435	-				+0.4
6,072,435	-				-0.3
6,072,454	+				-0.2
6,072,454	+				+0.6
6,072,454	+				-0.6
6,072,455	-				+0.6
6,072,480	+				-3.0
6,072,480	+				+0.2
6,072,480	+				+1.4
6,072,481	-				-0.1
6,072,481	-				+0.4
6,072,481	-				-1.7
6,072,481	-				-0.7
6,072,500	+				+1.2
6,072,500	+				+0.2
6,072,501	-				+0.2
6,072,501	-				-0.2
6,072,501	-				-0.3
6,072,520	+				-1.9
6,072,535	+				+0.6