Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4989

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4988 and Psyr_4989 overlap by 13 nucleotidesPsyr_4989 and Psyr_4990 are separated by 246 nucleotides Psyr_4988: Psyr_4988 - YD repeat protein, at 5,916,253 to 5,917,695 _4988 Psyr_4989: Psyr_4989 - hypothetical protein, at 5,917,683 to 5,918,153 _4989 Psyr_4990: Psyr_4990 - YD repeat protein, at 5,918,400 to 5,921,003 _4990 Position (kb) 5917 5918 5919Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5916.844 kb on - strand, within Psyr_4988at 5916.858 kb on + strand, within Psyr_4988at 5916.858 kb on + strand, within Psyr_4988at 5916.858 kb on + strand, within Psyr_4988at 5917.037 kb on + strand, within Psyr_4988at 5917.269 kb on + strand, within Psyr_4988at 5917.318 kb on + strand, within Psyr_4988at 5917.318 kb on + strand, within Psyr_4988at 5917.318 kb on + strand, within Psyr_4988at 5917.318 kb on + strand, within Psyr_4988at 5917.318 kb on + strand, within Psyr_4988at 5917.318 kb on + strand, within Psyr_4988at 5917.319 kb on - strand, within Psyr_4988at 5917.319 kb on - strand, within Psyr_4988at 5917.323 kb on - strand, within Psyr_4988at 5917.344 kb on - strand, within Psyr_4988at 5917.344 kb on - strand, within Psyr_4988at 5917.423 kb on + strand, within Psyr_4988at 5917.423 kb on + strand, within Psyr_4988at 5917.423 kb on + strand, within Psyr_4988at 5917.434 kb on + strand, within Psyr_4988at 5917.487 kb on + strand, within Psyr_4988at 5917.515 kb on + strand, within Psyr_4988at 5917.527 kb on + strand, within Psyr_4988at 5917.543 kb on - strand, within Psyr_4988at 5917.548 kb on + strand, within Psyr_4988at 5917.548 kb on + strand, within Psyr_4988at 5917.549 kb on - strand, within Psyr_4988at 5917.550 kb on + strand, within Psyr_4988at 5917.550 kb on + strand, within Psyr_4988at 5917.550 kb on + strand, within Psyr_4988at 5917.550 kb on + strand, within Psyr_4988at 5917.550 kb on + strand, within Psyr_4988at 5917.550 kb on + strand, within Psyr_4988at 5917.551 kb on - strandat 5917.551 kb on - strandat 5917.577 kb on + strandat 5917.604 kb on + strandat 5917.650 kb on + strandat 5917.650 kb on + strandat 5917.650 kb on + strandat 5917.651 kb on - strandat 5917.651 kb on - strandat 5917.658 kb on + strandat 5917.658 kb on + strandat 5917.659 kb on - strandat 5917.662 kb on + strandat 5917.737 kb on + strand, within Psyr_4989at 5917.738 kb on - strand, within Psyr_4989at 5917.766 kb on + strand, within Psyr_4989at 5917.767 kb on - strand, within Psyr_4989at 5917.807 kb on + strand, within Psyr_4989at 5917.835 kb on - strand, within Psyr_4989at 5917.907 kb on - strand, within Psyr_4989at 5918.004 kb on + strand, within Psyr_4989at 5918.025 kb on + strand, within Psyr_4989at 5918.040 kb on + strand, within Psyr_4989at 5918.076 kb on + strand, within Psyr_4989at 5918.287 kb on + strandat 5918.332 kb on - strandat 5918.338 kb on - strandat 5918.361 kb on + strandat 5918.397 kb on - strandat 5918.397 kb on - strandat 5918.412 kb on - strandat 5918.430 kb on + strandat 5918.487 kb on + strandat 5918.487 kb on + strandat 5918.487 kb on + strandat 5918.488 kb on - strandat 5918.488 kb on - strandat 5918.488 kb on - strandat 5918.488 kb on - strandat 5918.488 kb on - strandat 5918.488 kb on - strandat 5918.488 kb on - strandat 5918.488 kb on - strandat 5918.488 kb on - strandat 5918.488 kb on - strandat 5918.488 kb on - strandat 5918.664 kb on + strand, within Psyr_4990at 5918.664 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.740 kb on - strand, within Psyr_4990at 5918.740 kb on - strand, within Psyr_4990at 5918.740 kb on - strand, within Psyr_4990at 5918.740 kb on - strand, within Psyr_4990at 5918.740 kb on - strand, within Psyr_4990at 5918.740 kb on - strand, within Psyr_4990at 5918.740 kb on - strand, within Psyr_4990at 5918.748 kb on + strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.924 kb on - strand, within Psyr_4990at 5918.994 kb on + strand, within Psyr_4990at 5919.051 kb on + strand, within Psyr_4990at 5919.051 kb on + strand, within Psyr_4990at 5919.051 kb on + strand, within Psyr_4990at 5919.051 kb on + strand, within Psyr_4990at 5919.051 kb on + strand, within Psyr_4990at 5919.051 kb on + strand, within Psyr_4990at 5919.051 kb on + strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.064 kb on - strand, within Psyr_4990at 5919.064 kb on - strand, within Psyr_4990

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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5,916,844 - Psyr_4988 0.41 -1.8
5,916,858 + Psyr_4988 0.42 -0.0
5,916,858 + Psyr_4988 0.42 +0.5
5,916,858 + Psyr_4988 0.42 +1.5
5,917,037 + Psyr_4988 0.54 +0.8
5,917,269 + Psyr_4988 0.70 +0.2
5,917,318 + Psyr_4988 0.74 +0.9
5,917,318 + Psyr_4988 0.74 +2.7
5,917,318 + Psyr_4988 0.74 -2.3
5,917,318 + Psyr_4988 0.74 +0.4
5,917,318 + Psyr_4988 0.74 +1.9
5,917,318 + Psyr_4988 0.74 +0.4
5,917,319 - Psyr_4988 0.74 +2.0
5,917,319 - Psyr_4988 0.74 -0.3
5,917,323 - Psyr_4988 0.74 -0.4
5,917,344 - Psyr_4988 0.76 +1.3
5,917,344 - Psyr_4988 0.76 -1.1
5,917,423 + Psyr_4988 0.81 -1.3
5,917,423 + Psyr_4988 0.81 -2.9
5,917,423 + Psyr_4988 0.81 -0.1
5,917,434 + Psyr_4988 0.82 -3.1
5,917,487 + Psyr_4988 0.86 +0.3
5,917,515 + Psyr_4988 0.87 +0.5
5,917,527 + Psyr_4988 0.88 +1.1
5,917,543 - Psyr_4988 0.89 -0.6
5,917,548 + Psyr_4988 0.90 +0.2
5,917,548 + Psyr_4988 0.90 -0.4
5,917,549 - Psyr_4988 0.90 -0.6
5,917,550 + Psyr_4988 0.90 -0.1
5,917,550 + Psyr_4988 0.90 -1.5
5,917,550 + Psyr_4988 0.90 +0.0
5,917,550 + Psyr_4988 0.90 -2.3
5,917,550 + Psyr_4988 0.90 -1.8
5,917,550 + Psyr_4988 0.90 -2.2
5,917,551 - +1.2
5,917,551 - -2.3
5,917,577 + -0.2
5,917,604 + +0.7
5,917,650 + -1.1
5,917,650 + +0.9
5,917,650 + +1.1
5,917,651 - +0.6
5,917,651 - -0.1
5,917,658 + -1.5
5,917,658 + -1.8
5,917,659 - -1.4
5,917,662 + +0.5
5,917,737 + Psyr_4989 0.11 +1.2
5,917,738 - Psyr_4989 0.12 -3.0
5,917,766 + Psyr_4989 0.18 -2.2
5,917,767 - Psyr_4989 0.18 +0.4
5,917,807 + Psyr_4989 0.26 -2.0
5,917,835 - Psyr_4989 0.32 -2.2
5,917,907 - Psyr_4989 0.48 -2.1
5,918,004 + Psyr_4989 0.68 -0.5
5,918,025 + Psyr_4989 0.73 -1.6
5,918,040 + Psyr_4989 0.76 -1.9
5,918,076 + Psyr_4989 0.83 -0.0
5,918,287 + -1.2
5,918,332 - +1.8
5,918,338 - +2.4
5,918,361 + +1.1
5,918,397 - +1.7
5,918,397 - -1.0
5,918,412 - -2.2
5,918,430 + +1.0
5,918,487 + -0.2
5,918,487 + -1.9
5,918,487 + -2.0
5,918,488 - +0.2
5,918,488 - +1.8
5,918,488 - +0.7
5,918,488 - -1.1
5,918,488 - -2.3
5,918,488 - -2.1
5,918,488 - +1.4
5,918,488 - +0.7
5,918,488 - +1.3
5,918,488 - -0.5
5,918,488 - +0.5
5,918,664 + Psyr_4990 0.10 +0.4
5,918,664 + Psyr_4990 0.10 +1.3
5,918,739 + Psyr_4990 0.13 -0.6
5,918,739 + Psyr_4990 0.13 +0.3
5,918,739 + Psyr_4990 0.13 +0.2
5,918,739 + Psyr_4990 0.13 -3.6
5,918,739 + Psyr_4990 0.13 +0.4
5,918,739 + Psyr_4990 0.13 -1.5
5,918,740 - Psyr_4990 0.13 +0.5
5,918,740 - Psyr_4990 0.13 +0.5
5,918,740 - Psyr_4990 0.13 -1.7
5,918,740 - Psyr_4990 0.13 +1.2
5,918,740 - Psyr_4990 0.13 +0.5
5,918,740 - Psyr_4990 0.13 -2.5
5,918,740 - Psyr_4990 0.13 +1.1
5,918,748 + Psyr_4990 0.13 +0.2
5,918,874 + Psyr_4990 0.18 -2.2
5,918,874 + Psyr_4990 0.18 +0.8
5,918,874 + Psyr_4990 0.18 +0.8
5,918,874 + Psyr_4990 0.18 -1.4
5,918,874 + Psyr_4990 0.18 +1.5
5,918,874 + Psyr_4990 0.18 -1.9
5,918,875 - Psyr_4990 0.18 +1.2
5,918,875 - Psyr_4990 0.18 +0.5
5,918,875 - Psyr_4990 0.18 -1.3
5,918,875 - Psyr_4990 0.18 -1.5
5,918,875 - Psyr_4990 0.18 -0.1
5,918,875 - Psyr_4990 0.18 +0.8
5,918,875 - Psyr_4990 0.18 +0.5
5,918,875 - Psyr_4990 0.18 -1.8
5,918,875 - Psyr_4990 0.18 -2.0
5,918,875 - Psyr_4990 0.18 -0.9
5,918,924 - Psyr_4990 0.20 +0.2
5,918,994 + Psyr_4990 0.23 +0.2
5,919,051 + Psyr_4990 0.25 -0.2
5,919,051 + Psyr_4990 0.25 -1.0
5,919,051 + Psyr_4990 0.25 -0.2
5,919,051 + Psyr_4990 0.25 -2.8
5,919,051 + Psyr_4990 0.25 -0.7
5,919,051 + Psyr_4990 0.25 +0.2
5,919,051 + Psyr_4990 0.25 +1.5
5,919,052 - Psyr_4990 0.25 +0.5
5,919,052 - Psyr_4990 0.25 +2.4
5,919,052 - Psyr_4990 0.25 +2.4
5,919,052 - Psyr_4990 0.25 -0.7
5,919,052 - Psyr_4990 0.25 +1.9
5,919,052 - Psyr_4990 0.25 +0.2
5,919,052 - Psyr_4990 0.25 -2.7
5,919,052 - Psyr_4990 0.25 +0.7
5,919,052 - Psyr_4990 0.25 -1.3
5,919,052 - Psyr_4990 0.25 +1.1
5,919,052 - Psyr_4990 0.25 +1.0
5,919,052 - Psyr_4990 0.25 -0.6
5,919,052 - Psyr_4990 0.25 +2.0
5,919,064 - Psyr_4990 0.25 +0.2
5,919,064 - Psyr_4990 0.25 -0.2

Or see this region's nucleotide sequence