Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4496 and Psyr_4497 are separated by 83 nucleotides Psyr_4497 and Psyr_4498 overlap by 1 nucleotides Psyr_4498 and Psyr_4499 are separated by 113 nucleotides
Psyr_4496: Psyr_4496 - outer membrane transport energization protein TonB, at 5,359,307 to 5,360,020
_4496
Psyr_4497: Psyr_4497 - outer membrane transport energization protein ExbB, at 5,360,104 to 5,360,832
_4497
Psyr_4498: Psyr_4498 - outer membrane transport energization protein ExbD, at 5,360,832 to 5,361,257
_4498
Psyr_4499: Psyr_4499 - TonB-dependent siderophore receptor, at 5,361,371 to 5,363,491
_4499
Position (kb) 5360
5361
5362 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5359.881 kb on + strand, within Psyr_4496 at 5359.881 kb on + strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.882 kb on - strand, within Psyr_4496 at 5359.982 kb on + strand at 5359.982 kb on + strand at 5359.982 kb on + strand at 5359.983 kb on - strand at 5360.018 kb on + strand at 5360.018 kb on + strand at 5360.019 kb on - strand at 5360.019 kb on - strand at 5360.019 kb on - strand at 5360.019 kb on - strand at 5360.035 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.099 kb on + strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.100 kb on - strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.103 kb on + strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.104 kb on - strand at 5360.207 kb on - strand, within Psyr_4497 at 5360.207 kb on - strand, within Psyr_4497 at 5360.325 kb on + strand, within Psyr_4497 at 5360.325 kb on + strand, within Psyr_4497 at 5360.325 kb on + strand, within Psyr_4497 at 5360.325 kb on + strand, within Psyr_4497 at 5360.326 kb on - strand, within Psyr_4497 at 5360.333 kb on - strand, within Psyr_4497 at 5360.471 kb on + strand, within Psyr_4497 at 5360.471 kb on + strand, within Psyr_4497 at 5360.471 kb on + strand, within Psyr_4497 at 5360.472 kb on - strand, within Psyr_4497 at 5360.472 kb on - strand, within Psyr_4497 at 5360.472 kb on - strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.551 kb on + strand, within Psyr_4497 at 5360.552 kb on - strand, within Psyr_4497 at 5360.552 kb on - strand, within Psyr_4497 at 5360.552 kb on - strand, within Psyr_4497 at 5360.677 kb on + strand, within Psyr_4497 at 5360.678 kb on - strand, within Psyr_4497 at 5360.697 kb on + strand, within Psyr_4497 at 5360.894 kb on + strand, within Psyr_4498 at 5361.171 kb on + strand, within Psyr_4498 at 5361.256 kb on - strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.392 kb on + strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.393 kb on - strand at 5361.456 kb on + strand at 5361.456 kb on + strand at 5361.456 kb on + strand at 5361.456 kb on + strand at 5361.457 kb on - strand at 5361.457 kb on - strand at 5361.457 kb on - strand at 5361.457 kb on - strand at 5361.457 kb on - strand at 5361.457 kb on - strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.478 kb on + strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.479 kb on - strand at 5361.507 kb on + strand at 5361.606 kb on + strand, within Psyr_4499 at 5361.607 kb on - strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.662 kb on + strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.663 kb on - strand, within Psyr_4499 at 5361.695 kb on + strand, within Psyr_4499 at 5361.696 kb on - strand, within Psyr_4499 at 5361.696 kb on - strand, within Psyr_4499 at 5361.832 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.854 kb on + strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.855 kb on - strand, within Psyr_4499 at 5361.887 kb on + strand, within Psyr_4499 at 5361.887 kb on + strand, within Psyr_4499 at 5361.887 kb on + strand, within Psyr_4499 at 5361.887 kb on + strand, within Psyr_4499 at 5361.887 kb on + strand, within Psyr_4499 at 5361.888 kb on - strand, within Psyr_4499 at 5361.888 kb on - strand, within Psyr_4499 at 5361.888 kb on - strand, within Psyr_4499 at 5361.888 kb on - strand, within Psyr_4499 at 5361.888 kb on - strand, within Psyr_4499 at 5361.892 kb on - strand, within Psyr_4499 at 5361.956 kb on + strand, within Psyr_4499 at 5361.956 kb on + strand, within Psyr_4499 at 5361.956 kb on + strand, within Psyr_4499 at 5361.956 kb on + strand, within Psyr_4499 at 5361.956 kb on + strand, within Psyr_4499 at 5361.956 kb on + strand, within Psyr_4499 at 5361.956 kb on + strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.957 kb on - strand, within Psyr_4499 at 5361.958 kb on + strand, within Psyr_4499 at 5361.959 kb on - strand, within Psyr_4499 at 5362.136 kb on + strand, within Psyr_4499 at 5362.227 kb on - strand, within Psyr_4499 at 5362.227 kb on - strand, within Psyr_4499 at 5362.241 kb on + strand, within Psyr_4499 at 5362.241 kb on + strand, within Psyr_4499 at 5362.242 kb on - strand, within Psyr_4499 at 5362.256 kb on + strand, within Psyr_4499
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 5,359,881 + Psyr_4496 0.80 +1.1 5,359,881 + Psyr_4496 0.80 -0.4 5,359,882 - Psyr_4496 0.81 -0.6 5,359,882 - Psyr_4496 0.81 +0.9 5,359,882 - Psyr_4496 0.81 -0.4 5,359,882 - Psyr_4496 0.81 -0.9 5,359,982 + +1.2 5,359,982 + +0.3 5,359,982 + -2.0 5,359,983 - -0.3 5,360,018 + +2.3 5,360,018 + -0.3 5,360,019 - -0.1 5,360,019 - +0.1 5,360,019 - -0.2 5,360,019 - -0.1 5,360,035 + -0.2 5,360,099 + -1.0 5,360,099 + -1.8 5,360,099 + +0.3 5,360,099 + +3.6 5,360,099 + +0.2 5,360,099 + -1.5 5,360,099 + -1.5 5,360,099 + +1.1 5,360,099 + +0.4 5,360,099 + +0.3 5,360,099 + +0.6 5,360,099 + +0.8 5,360,100 - -0.3 5,360,100 - +0.7 5,360,100 - -3.6 5,360,100 - +0.0 5,360,100 - -0.6 5,360,100 - +3.8 5,360,100 - -0.0 5,360,103 + -0.2 5,360,103 + +1.7 5,360,103 + +0.3 5,360,103 + +0.4 5,360,103 + -1.3 5,360,103 + +1.5 5,360,103 + -1.5 5,360,103 + -0.3 5,360,103 + -1.5 5,360,103 + -1.7 5,360,103 + +0.6 5,360,103 + -3.3 5,360,104 - +0.8 5,360,104 - +0.1 5,360,104 - +0.2 5,360,104 - +1.5 5,360,104 - +1.1 5,360,104 - -0.9 5,360,104 - -0.5 5,360,104 - -1.2 5,360,104 - +0.0 5,360,104 - +1.0 5,360,104 - +0.1 5,360,207 - Psyr_4497 0.14 +1.0 5,360,207 - Psyr_4497 0.14 +0.5 5,360,325 + Psyr_4497 0.30 -0.8 5,360,325 + Psyr_4497 0.30 -0.4 5,360,325 + Psyr_4497 0.30 +1.3 5,360,325 + Psyr_4497 0.30 -0.5 5,360,326 - Psyr_4497 0.30 -2.0 5,360,333 - Psyr_4497 0.31 -2.4 5,360,471 + Psyr_4497 0.50 -2.0 5,360,471 + Psyr_4497 0.50 -0.7 5,360,471 + Psyr_4497 0.50 +2.1 5,360,472 - Psyr_4497 0.50 -0.7 5,360,472 - Psyr_4497 0.50 +0.5 5,360,472 - Psyr_4497 0.50 +0.8 5,360,551 + Psyr_4497 0.61 +1.4 5,360,551 + Psyr_4497 0.61 -0.9 5,360,551 + Psyr_4497 0.61 +0.5 5,360,551 + Psyr_4497 0.61 +2.0 5,360,551 + Psyr_4497 0.61 +0.8 5,360,552 - Psyr_4497 0.61 -1.3 5,360,552 - Psyr_4497 0.61 +0.4 5,360,552 - Psyr_4497 0.61 +0.4 5,360,677 + Psyr_4497 0.79 +0.2 5,360,678 - Psyr_4497 0.79 -1.7 5,360,697 + Psyr_4497 0.81 -0.7 5,360,894 + Psyr_4498 0.15 -0.4 5,361,171 + Psyr_4498 0.80 -0.8 5,361,256 - +1.2 5,361,392 + -1.3 5,361,392 + -2.6 5,361,392 + +1.2 5,361,392 + -0.7 5,361,392 + +2.1 5,361,392 + +0.2 5,361,392 + -1.2 5,361,392 + +1.1 5,361,392 + +1.6 5,361,392 + +0.0 5,361,392 + +0.1 5,361,392 + -2.9 5,361,392 + +0.2 5,361,392 + -1.3 5,361,392 + +0.7 5,361,392 + -0.3 5,361,393 - -0.7 5,361,393 - +0.3 5,361,393 - -2.4 5,361,393 - -1.3 5,361,393 - -2.3 5,361,393 - -2.4 5,361,393 - +0.9 5,361,393 - +3.4 5,361,393 - -2.2 5,361,393 - +2.1 5,361,393 - -0.2 5,361,393 - -0.3 5,361,393 - +0.0 5,361,393 - +2.4 5,361,393 - -0.1 5,361,393 - +0.5 5,361,393 - +1.2 5,361,456 + -0.7 5,361,456 + +0.6 5,361,456 + -1.0 5,361,456 + +0.2 5,361,457 - -0.4 5,361,457 - +0.9 5,361,457 - -2.4 5,361,457 - +0.9 5,361,457 - -1.2 5,361,457 - +0.4 5,361,478 + -1.7 5,361,478 + +0.6 5,361,478 + +0.4 5,361,478 + +0.1 5,361,478 + -0.3 5,361,478 + -1.5 5,361,478 + -3.1 5,361,478 + -0.4 5,361,478 + -1.7 5,361,478 + -0.9 5,361,478 + +1.9 5,361,478 + +0.9 5,361,478 + -1.3 5,361,478 + +1.3 5,361,479 - +1.1 5,361,479 - +1.4 5,361,479 - +0.4 5,361,479 - +1.6 5,361,479 - -3.0 5,361,479 - -0.7 5,361,479 - -1.2 5,361,479 - +0.8 5,361,479 - -0.3 5,361,479 - +0.2 5,361,479 - +2.2 5,361,479 - +0.8 5,361,507 + -0.2 5,361,606 + Psyr_4499 0.11 -1.9 5,361,607 - Psyr_4499 0.11 +0.1 5,361,662 + Psyr_4499 0.14 +1.7 5,361,662 + Psyr_4499 0.14 -0.3 5,361,662 + Psyr_4499 0.14 +0.0 5,361,662 + Psyr_4499 0.14 +1.7 5,361,662 + Psyr_4499 0.14 +0.7 5,361,662 + Psyr_4499 0.14 -0.9 5,361,662 + Psyr_4499 0.14 -0.3 5,361,662 + Psyr_4499 0.14 -1.5 5,361,662 + Psyr_4499 0.14 -0.1 5,361,662 + Psyr_4499 0.14 +1.1 5,361,662 + Psyr_4499 0.14 -0.0 5,361,662 + Psyr_4499 0.14 +0.8 5,361,663 - Psyr_4499 0.14 +0.3 5,361,663 - Psyr_4499 0.14 +1.4 5,361,663 - Psyr_4499 0.14 -2.0 5,361,663 - Psyr_4499 0.14 -0.3 5,361,663 - Psyr_4499 0.14 +0.6 5,361,663 - Psyr_4499 0.14 +0.4 5,361,663 - Psyr_4499 0.14 -0.6 5,361,663 - Psyr_4499 0.14 +0.0 5,361,663 - Psyr_4499 0.14 +0.8 5,361,663 - Psyr_4499 0.14 -0.2 5,361,663 - Psyr_4499 0.14 -0.2 5,361,663 - Psyr_4499 0.14 +1.3 5,361,663 - Psyr_4499 0.14 -3.0 5,361,695 + Psyr_4499 0.15 +0.7 5,361,696 - Psyr_4499 0.15 +0.4 5,361,696 - Psyr_4499 0.15 -1.7 5,361,832 + Psyr_4499 0.22 +0.8 5,361,854 + Psyr_4499 0.23 -0.7 5,361,854 + Psyr_4499 0.23 -2.2 5,361,854 + Psyr_4499 0.23 -1.3 5,361,854 + Psyr_4499 0.23 -1.3 5,361,854 + Psyr_4499 0.23 +0.1 5,361,854 + Psyr_4499 0.23 -0.7 5,361,854 + Psyr_4499 0.23 +0.9 5,361,854 + Psyr_4499 0.23 -0.4 5,361,855 - Psyr_4499 0.23 -0.1 5,361,855 - Psyr_4499 0.23 +0.8 5,361,855 - Psyr_4499 0.23 -1.8 5,361,855 - Psyr_4499 0.23 +0.3 5,361,855 - Psyr_4499 0.23 -0.2 5,361,855 - Psyr_4499 0.23 -4.3 5,361,855 - Psyr_4499 0.23 +0.6 5,361,855 - Psyr_4499 0.23 +0.0 5,361,855 - Psyr_4499 0.23 -2.2 5,361,887 + Psyr_4499 0.24 -0.0 5,361,887 + Psyr_4499 0.24 +0.9 5,361,887 + Psyr_4499 0.24 -0.1 5,361,887 + Psyr_4499 0.24 +0.7 5,361,887 + Psyr_4499 0.24 -2.6 5,361,888 - Psyr_4499 0.24 +1.2 5,361,888 - Psyr_4499 0.24 -0.6 5,361,888 - Psyr_4499 0.24 -0.8 5,361,888 - Psyr_4499 0.24 -0.8 5,361,888 - Psyr_4499 0.24 +0.6 5,361,892 - Psyr_4499 0.25 +0.1 5,361,956 + Psyr_4499 0.28 +0.8 5,361,956 + Psyr_4499 0.28 -2.0 5,361,956 + Psyr_4499 0.28 -1.2 5,361,956 + Psyr_4499 0.28 +2.3 5,361,956 + Psyr_4499 0.28 -0.2 5,361,956 + Psyr_4499 0.28 -1.6 5,361,956 + Psyr_4499 0.28 -1.0 5,361,957 - Psyr_4499 0.28 +1.4 5,361,957 - Psyr_4499 0.28 -3.0 5,361,957 - Psyr_4499 0.28 -0.3 5,361,957 - Psyr_4499 0.28 +2.2 5,361,957 - Psyr_4499 0.28 +0.8 5,361,957 - Psyr_4499 0.28 +1.8 5,361,957 - Psyr_4499 0.28 +1.0 5,361,957 - Psyr_4499 0.28 +1.5 5,361,957 - Psyr_4499 0.28 +1.3 5,361,957 - Psyr_4499 0.28 -0.3 5,361,957 - Psyr_4499 0.28 +0.5 5,361,958 + Psyr_4499 0.28 -0.9 5,361,959 - Psyr_4499 0.28 +0.3 5,362,136 + Psyr_4499 0.36 +1.0 5,362,227 - Psyr_4499 0.40 -0.9 5,362,227 - Psyr_4499 0.40 +0.3 5,362,241 + Psyr_4499 0.41 -1.7 5,362,241 + Psyr_4499 0.41 +0.6 5,362,242 - Psyr_4499 0.41 -1.0 5,362,256 + Psyr_4499 0.42 +2.9
Or see this region's nucleotide sequence